Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                  ------>MYB46(1)                                                                                ------>MYB83                                                                                --------->MYB52(1)                                                                              --------->AtMYB61                                                                              <---------MYB46(2)                                                                  --------->ARR14(2)             <---------ZAT2                                       <---------ARR11(3)             --------->ZAT2                                       --------->ARR11(3)              <--       --------->MYB52(1)                              <---------ZAT14        <---------MYB59     ---      <---------ATHB12                                 --------->ZAT14        <---------MYB111(1) ---      --------->MYB46(3)                               --------->ZAT18        <---------MYB52(2) ---- ------>ZmHOX2a(1)                                   <---------WOX13(1)     ------->TEIL       ------ ----At4g35610                            <---------ALFIN1        <---------ARR14(2)---------->DOF2 --->At4g35610       <---------AHL20(2) ------>ZmHOX2a(1)       ----------->ARR10 --------->MYB46(3)< --->ZAT2 ------->GAMYB      ---------->DOF2       --------->ATHB12    <---------AtLEC2       -------   ttcctccaataaccgagctcgttttaaatgcaaaagcccttcctctacctccttgattgcactgagaagttcttcatggacctaaccaaagacaaaacca  10585900                                 <-----------GT1          --------->TOE1(2)    <-----------GT1          --------->TOE2(2)  --------->GLK1(1)         --------->YAB1     --------->ARR14(2) -------ALFIN1              <---------ARR14(2) -------->RAV1(1)        --------->ANAC46 ------>AtMYB61          --------->ANAC55(2)                           --------->DAG2 ----->ANAC46           <---------LBD16                         ---------->DOF2 --->AtMYB61          --------->ARR14(2) <---------STY1(2)    <---------YAB1                    <---- ---------ALFIN1      <---------ARR14(2) --------->STY1(2)<---------GLK1(2)       <----------DOF2 -->MYB46(3)  --------->ZAT6<---------GLK1(2)     <---------TOE2(3)   ---------->DOF2       <--------   ccacacatgaaacataagactaagtatacggattttcacctctagctactctaagaatgagattatcaaagaaaaaggaaacagctttggactaattgat  10586000                                                                                =====================                                                                               <------ZmHOX2a(2)                                                                               <---------At4g35610                                                                               --------->At4g35610                                                                              <---------ARR14(2)                                                                              --------->ARR14(2)                              --------->YAB1                        ===================HOX2a_HOX2a                    ---------->DOF2                                 <------ZmHOX2a(1)               --------->HSFC1(1)                                   ==================HOX2a_HOX2a               --------->HSFB2a(2)                                 --------->ANAC46               <---------HSFC1(1)                                 --------->LBD16        --------->AHL20(2)   <---------ATHB12                    <-----------RAV1(2)        <---------AHL20(2) --------->WOX13(1)          --------->TOE2(3)>>>>>>>>>CBP60g -------GT1    <---------------AGL15                   --------->YAB1   >>>>>>>>>SARD1       -------- -WOX13(1)     <---------HSFB2a(2)            --------->YAB1     <---------LBD16------>ZmHOX2a(2)   accatactatataatttctagaaaaagagcaatcacaaaattgttgaatcgtagtaatcttagttctccaggaaatttgggatctgatttgagagaagaa  10586100                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                                                                 ----               <---------LBD16                           ---------->DOF2                         <---            <---------GLK1(1)                   <---------WRKY12                                 <---  <---------At5g28300                           <<<<<<<<<WRKY18    <----------DOF2               ---- <-----------GT1--------->HSFB2a(2)           <-----------HVH21 --------->GLK1(2)              ------ ================HOX2a_HOX2a         --------->ALFIN1   <------ZmHOX2a(1)        --------->At4g35610 --->GT1  <------ZmHOX2a(1) <-----------HVH21 --------->TOE2(3)<---------GLK1(2) <---------At4g35610   aatttaccgagaggagttcgggattagatgggtcagagagtagggcttcgtcaatggaggaaagagattctttttgttcaattagctgaatgtcaagaag  10586200          <---------MYB52(1)         <-------GAMYB                                                                              <         --------------------->WRI1                                                                 <        <---------MYB46(3)                                                                          < ------ARR14(2)                                                                                     - ----->ARR14(2)                                             <------ZmHOX2a(1)                       < ------ARR11(3)                                          <------NtERF2                             <- ----->ARR14(3)                      <---------YAB1     --------->LBD16                          <--- ------GLK1(2)                     <---------At4g35610 <----------CDC5                           ---- ------ARR14(3)         --------->ANAC58              --------->LBD16                          <----- ----->ARR11(3)         --------->ANAC58              <---------LBD16            >>>>>>>>>TBF1 <----- ----->ARR10            --------->ANAC46            <---------LBD16          <------ZmHOX2a(1)<------   attttcaaggtcgttgttttcttcgctcgccatgggaagatgattttagagtctcccgcggaggagagaagacgagagaggaagaagaaaacttcttggg  10586300          --------->ANAC58          --------->ANAC58         <---------LBD16         *TSS       <---------ARR14(2)       --------->ARR14(2)      <---------RAP2.6(3)      <---------ATERF1(1)      ------>NtERF2     <---------ETT(1)     ----------->HVH21     --------->DEAR3(1)    --------->ATERF1(1)    --------->DEAR3(2)    --------->SPL7   ------>NtERF2                                                 ------------>CBF   <---------ATERF1(1)                                        <---------ANAC58 --------->LBD16                                              <---------ANAC58              <-------- ---------ANAC58                                              <-------GAMYB                 --------- ---------ANAC58                                             <------MYB46(1)               <---------AHL20(2) ---------HSFB2a(2)                                          <------MYB83                  --------->AHL20(2) -------->HSFB2a(2)      --------->ARR14(2)                  <---------MYB46(3)            <---------AHL20(1) ---------ANAC46       --------->LBD16                      <---------AtMYB61         ------------>CBF --------LBD16       <---------LBD16                       <---------MYB55(1)      <---------DEAR3(2) ------ARR14(2)     <---------At5g28300          <---------AHL20(2)                <------MYB83 ----->ARR14(2)    --------->MYB52(1)           --------->AHL20(2)                 <------MYB46(1) ----ANAC58        <-----------GT1         <-----------GT1<---------MYB52(1)      --------->MYB59 ----ANAC58--------->LBD16           <---------YAB1     <---------ANAC58        <---------MYB52(1) ---TOE1(2)----------->GT1           <---------AHL20(2) <---------ANAC58       <---------SPL7   ttccgggccgacccggaaaattaaccgggtttgcagtttataatttttcattttatatgcgtttggttgcaattcgcatacggttcggttcaatttaatt  10586400                                                                      --------->ARR14(2)        <---------ANAC46                                              <---------ARR14(2)        ----------->GT1                                            --------->ANAC58   <------MYB46(1)                              <-----------GT1    --------->ANAC58   <------MYB83 <---------AHL20(2)              --------->MYB52(1) --------->LBD16 -AHL20(2)      --------->AHL20(2)     ---------->ID1              --------->ANAC46        --------->MYB52(1) >AHL20(2)  <---------AHL20(2)     <----------DOF2      ----------->HVH21             --------->AHL20(2)   tgatttggttttgtataattttttgttaaactcttaactttgtagttatataaccgatttgacaaatgcccgaaaccgaaaacccaaaaaaaatacccga  10586500                                         <------ZmHOX2a(2)                                         --------->CCA1(2)                                         --------->ARR14(1)                                        --------->ARR14(2)                                        <---------ARR14(2)                    <-----------GT1                          --------->TOE2(3)                                ------>MYB83                         ----------->RAV1(2)                               ------>MYB46(1)    --------->ARR14(2)  --------->MYB52(1)------>ZmHOX2a(2)                <---------ICU4           -    <---------ARR14(2) --------->RVE1(1)--------->AGP1   <-------TEIL    --------->TOE2(3)          -  --------->ANAC46 --------->AHL20(2)  <---------At4g35610               <---------MYB59  --------->MYB52(1)   atgcccgataccgaaaacccaaaaaatacctgaatcgattcagatccgatttttaaaaatacgtcgagttctaaacctaattacccaaaaaaaaacagaa  10586600                                            --------->AHL20(1)                                            <---------AHL20(1)                                   <---                                            --------->AHL20(2)                                   ----                                            <---------AHL20(2)                                -------                                         --------->AHL20(2)                                   -------                                      <----------DOF2              --------->YAB1         <---------YAB1           ----------->GT1 <---------AHL20(2)                     <---------YAB1        <-----------GT1 ----->MYB46(1)            --------->AHL20(2)                   --------->YAB1       <---------ICU4 ----->MYB83    --------->ICU4   <-----------GT1      <---------YAB1          --------->GLK1(1) <----   ccaaatctaatacctgtaaatattcgaatataaatatacactttaaaatattagttatatttatacttataatactccaaatatccaaaattacaattat  10586700      <---------ARR11(3)      --------->AHL20(1)      <---------AHL20(1)                                                                       <-----      --------->ARR11(3)                                                                      -------      --------->AHL20(2)                    --------->AHL20(2)                        <---------YAB1      <---------AHL20(2)                ----------->GT1                              --------->AHL20(1) --------->AHL20(2)                <---------AHL20(2)                                <---------AHL20(1) ------AHL20(2)                   <---------ARR11(3)                                 <---------ARR11(3) ----->AHL20(2)                   --------->ARR11(3)                      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) -->YAB1                          <---------AHL20(1)                     ----------->GT1     <------- -->AHL20(2)                    --------->ARR14(2)   --------->MYB46(3) <---------TOE2(3)    -------- -----YAB1                      <---------ARR14(2) <-----------GT1    ---------->DOF2--------->ARR11(3)   aaattgaatatattagatagttttgagtaattcggatatatttggataaaatgtaaccaatgttatagtttttaaaggtaatttgaatatttttggatac  10586800  Previous    Next  AGI:  At2g24830.1    Description:  zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO44375.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain D111/G-patch; (InterPro:IPR000467) Range:  from: 10583935    to: 10586309    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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