Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                       --------->AtMYB61                                     <-----------HVH21            --------->AtMYB61                                <---------bZIP60(2)               --------->ANAC46     <---------ALFIN1                                ----------->RAV1(2)     --------->ICU4          --------->ANAC46   --------->DEAR3(1)           <---------ANAC46       --------->ANAC58         --------->ANAC58   <---------ALFIN1          ----------->HVH21         --------->ANAC58 --------->AtMYB61   --------->AtMYB61        <-----------HVH21      --------->ANAC58  --------->DEAR3(1)--------->DEAR3(1)  --------->MYB46(3)       --------->bZIP60(2)     --------->ANAC58  <---------ALFIN1------>NtERF2 ---------ALFIN1           <---------O2          ---------->DOF2  <---------ALFIN1<-----------HVH21 -------->ANAC46           --------->O2    <---------ZAT14       --------->MYB46(3) <---------ALFIN1 --->ZmHOX2a(1)            <---------TGA1a --------->ZAT14     <-----------GT1  --------->ANAC58 ----->ANAC46              --------->TGA1a <---------ZAT18   <-----------GT1  <---------ALFIN1 -->ARR14(2)               =================================bZIP_DOF--------->MYB46(3)<------NtERF2 ---ARR14(2)          --------->ANAC46    --------->DEAR3(1)--------->YAB1   <---------REM1(2) >TEIL                --------->ANAC58   --------->ANAC46--------->YAB1 <---------ALFIN1 --CCA1(2)            --------->ANAC58  <---------At5g28300 <---------ICU4  ------>ZmHOX2a(1) ------>ZmHOX2a(1)   ctccaccaccttgagagcattctctcgccatgtgacctggttcaccgcacttaaagcaagaattatcaccaccacctcctccacggccaccgcttcctct  9044300                                                                 --------->AtMYB61                                                                 <---------ALFIN1                                                          <------NtERF2                                                         ------>NtERF2                                                         --------->LBD16                                                        --------->RRTF1(2)                                                        --------->RAP2.3(3)                                                        --------->RAP2.6(2)                                                        --------->RRTF1(3)                                                        --------->DREB2C(2)                                                        --------->ANAC46                                                        --------->RAP2.3(2)                                                        --------->DEAR3(1)                                                        --------->ATERF1(2)                                                        <---------ATERF1(2)                                                       --------->ERF1                                                       --------->DEAR4(2)                                ------->PIF5           --------->RAP2.3(1)                                <-------PIF5           --------->ATERF1(1)                               --------->ANAC58        --------->RAP2.6(1)                               ==============================MYC_MYB                               <---------O2            --------->RRTF1(1)                               --------->TGA1a         --------->ORA47(2)                               <---------TGA1a        --------->ABI4(1)                               --------->ANAC46       ------>NtERF2                               --------->ANAC58      --------->AtMYB61                      ---------                               --------->bZIP60(2)   ------->GAMYB                          <--------                          --------->ANAC46           --------->DEAR3(1)                     ---------                   <---------ANAC58                  --------->DREB2C(2)                   <---------MYB55(2)                  <---------HSFC1(2)                 <---------ALFIN1                      --------->MYB46(3)                  --------->HSFC1(2)                 --------->ANAC46                    --------->DEAR3(1)                  --------->ZAT2<-----------HVH21   --------->MYB46(3)                   <---------ALFIN1                  --------->HSFB2a(1)              --------->ABI4(1)                     --------->AtMYB61                  --------->At4g35610             --------->DEAR3(1)           --------->At4g35610               --------->LBD16 --------->O2       --------->AtMYB61          <-----------RAV1(2)    <            ------>ZmHOX2a(1)<---------ALFIN1     <---------ALFIN1         ----------->RAV1(1) ------     <---------ARR14(2)   <---------ALFIN1       <---------MYB55(2) <---------ALFIN1 --------->MYB46(3)     --------->ARR14(2) ------>ZmHOX2a(1)        --------->MYB46(3) --------->DEAR3(1)--------->AtMYB61  --------->YAB1  <---------At4g35610     ------>ZmHOX2a(1)     --------->MYB46(3)  ------->TEIL<----  --------->AtMYB61<---------ANAC58   <---------ALFIN1<---------ATERF1(1)--------->SPL7 --------->MYB46(3)   tccaccataacctcctccgtagcttcctccaccacgtccccctcctcttccaccaccgccgccaaaaccaccgcgtccaccagatgaaccaccaccaccg  9044400                <---------ALFIN1      ----------->HVH21<---------MYB46(3)                                                       <----     --------->ANAC46  <---------DEAR3(2)                                                       -----    --------------->AGL15                                <------NtERF2                          -----    <---------LBD16 <-----------HVH21                   --------->LBD16                       <------   <-----------------AGL1   <---------HSFB2a(2)         <------NtERF2                        ========  <---------At5g28300<---------MYB52(1)               <---------LBD16                        ======== >AtMYB61      --------->At4g35610                  <---------SPL7  --------->TOE2(3)        ------>ZmHOX2a(1) -ALFIN1       <---------ZAT2                      <---------RAP2.6(2)             --------->MYB52(1) >DEAR3(1)     --------->ZAT18                     <---------DEAR3(1)           --------->ANAC58<---- ---------MYB52(1) --------->DEAR3(1)             --------->RAP2.6(3)           --------->ANAC58----- --->DEAR3(1)  <---------ABI4(2)                  --------->SPL7    --------->AtMYB61       --------- -----At4g35610<---------At4g35610              ----------->HVH21   --------->TOE1(3)   <---------GLK1(2)   ctgttaccctgaacgggagcaccgtcgggtccagacacttcaatagccttgggacggccggagttgtcaacctcaacgtcgaactcaacagattcctcag  9044500                       ------>ZmHOX2a(2)                      --------->CCA1(2)                      <------ZmHOX2a(2)                     <---------ARR14(2)                     <---------AGP1                     --------->ARR11(3)                     --------->ARR14(2)                     <---------ARR11(3)                     --------->AGP1        --------->ANAC46                                         <---------MYB52(1)        --------->ANAC58                                     <-----------HVH21        --------->ANAC58----------->HVH21                --------->DEAR3(1) -----ZAT2          <---------CCA1(2)                    --------->AtMYB61 ------>RAV1(2) ------>ZmHOX2a(1)                        <---------ALFIN1 ---->ZAT2 <---------GLK1(1)                            --------->MYB46(3) -----RAV1(2)   <-----------HVH21                   <-----------HVH21 ============================HOX2a_HOX2a           ------>ZmHOX2a(2)                        <-------- =============================HOX2a_HOX2a         <------ZmHOX2a(2)                ------>MYB46(1) -----At4g35610 ==============HOX2a_HOX2a        --------->ARR11(3) <------MYB83 --------->AtMYB61 ---->At4g35610 =============HOX2a_HOX2a         <---------ARR11(3) <------MYB46(1)------>MYB83 >TOE2(3)  --------->GLK1(1)           <---------WRKY38(1)  --------->DEAR3(1)   <---------MYB59   ctgcgaggctacgaaatccttcagatctgatggaagactggtgaacgaagagatcgtcaccaccgtcgctaggtgtgatgaaaccaaaccccttctgtgt  9044600                                               <---------TGA1a                                               --------->ANAC58                                               --------->ANAC55(2)                                               --------->TGA1a                                               --------->ANAC58                      <---------ANAC46         --------->O2                  --------->RVE1(1)                   <---------MYB52(1)          --------->ANAC46             --------->GLK1(2)              <---------MYB52(1)               <---------O2                 <-----------ARR10          <---------At5g28300      --------->AtMYB61                        --------->ARR11(3)         <-----------GT1           <---------ALFIN1                 <---------YAB1        <---------ZAT14           --------->MYB46(3)        --------->At4g35610     ------>NtERF2      --------->ANAC46<---------ANAC58 --------->YAB1       <---------At4g35610    --------->DEAR3(1)      --------->bZIP60(2)       --------->ANAC46         ------>ZmHOX2a(1)  <---------ARR11(3) ------   --------->MYB46(3) <---------ANAC58<---------ATHB12  <---------ALFIN1   <---------GLK1(2)  ------- -ANAC46--------->ZAT14         <---------ALFIN1      ------>ZmHOX2a(1) --------->YAB1       --------   atcaaaccacttcaccgttcccttgcgtctgtctccaccactcatgttcacgtctcctcctccgctcattctgatcaaaatctctccgacgaactaaaag  9044700                                                                                                  <--                                                                                                  <--                                                                                                 <<<<                                                                                                 ----                                                                                                 ----                                                                                                 <---                                                                                                 ----                                                                                                 ----                                                                                                 <---                                                                                                 ----                                                                                                 ----                                                                                                 <---                                                                                                 ----                                                                                                 ----                                                                                                 <---                                                                                                 ====                                                                                                 ====                                                                                                 ----              ------>ZmHOX2a(2)                                                                 <----             <---------GLK1(1)                                                                  -----             --------->GLK1(1)                                                                 <-----             <------ZmHOX2a(2)                                                               ------>NtERF2            <---------AGP1                                       --------->ARR14(2)          --------            --------->AGP1                                       <---------ARR14(2)          <-------            <---------ARR14(2)                          --------->ARR11(3)                  ---------            --------->ARR11(3)         --------->At4g35610       --------->ARR11(3)         ---------            --------->ARR14(2)         <---------At4g35610       <---------ARR11(3)         ---------            <---------ARR11(3)     ----------->HVH21    <---------ARR11(3)              <---------ARR14(2)       <-----------HVH21         <---------ANAC58       <---------ARR14(2)              --------->ARR14(2)  <-----------GT1                <---------ANAC58       --------->ARR14(2)             --------->GLK1(1) ----->GT1 <---------CCA1(2)     <---------ANAC46      <---------CCA1(2)   ---------->DOF2 <---------LBD16 -->DAG2   --------->At4g35610 *TSS--------->ALFIN1--------->AHL20(2)      ========================== -->DOF2<------ZmHOX2a(2)   <----------DOF2        <-----------TBP--------->CCA1(2)    <---------GLK1(1)   taaatcaccgatcagatctctctctctctcctttggcgtgaagcagacgctgtttatatatctgcgagatatgtgtgtaaaggcatagggtatcccgcca  9044800       <---------AHL20(2)       <-----------GT1 ---------TGA1 ---------HVH21 <<<<<<HY5 ----->ANAC58 ----->ANAC46 ------ANAC55(2) ----->ANAC58 ----->ANAC55(1) ------TGA1a ----->bZIP60(1) ----->bZIP60(2) ------bZIP60(1) ----->ANAC55(2) ----->TGA1a ------O2 ====================bZIP_DOF ====================bZIP_DOF ----->O2 -------STF1                                                         <-----------GT1 ->NtERF2                                                         <---------ARR14(2) ----ALFIN1                                                       ------->TEIL  --------->AHL20(2) ->LBD16                                                       <---------ANAC55(1) ----HVH21             <---------GLK1(2)                       --------->ANAC55(2) >ANAC58               --------->ARR14(2)                      --------->ANAC55(1) >ANAC58  <----------DOF2                   --------->YAB1     <---------ANAC55(2) >ANAC46  <---------DAG2                 <----------DOF2 --------->AHL20(2)     <---------AHL20(2) ======bZIP_DOF   ------------>CBF<----------DOF2<-----------GT1  --------->ARR14(2)               <-   cgtcactatttactttttattccaatattctctactcttttttctttcatattcccatttttaatacgtattttccatcttataaattggctatttctat  9044900                                                                                                <----                                                                                               <-----                        <---------HSFB2a(2)                                                    <-----                        --------->HSFB2a(2)                                                    ------                  <---------DAG2                                                              <------                  <----------DOF2                                                             -------               <---------WRKY18(1)                                                            -------            <---------ANAC58                                                                  <------            <---------ANAC58                --------->ANAC55(2)                   ---------->DOF2       <---------ICU4 <-----------GT1     <-----------GT1  ------->TEIL--------->YAB1----------->GT1 ----------GT1 >>>>>>>>>WRKY18   --------->YAB1   --------->AHL20(2)   ----------->GT1     --------->AHL20(2)   ttttctgcataattccttgactttttccagtacaattagaaattttacttaatgaaatacgaatttgtttgaatagtaaaactaaaaaggaaataatata  9045000                                                  --------->HSFB2a(2)                                                  <---------HSFB2a(2)                                                 <---------LBD16                               <-----                                                 <---------ANAC46                             <------MYB46(1)                                                <---------LBD16                      --------->HSFB2a(2)                                             <----------DOF2                         <---------HSFB2a(2)                                            --------------->AGL15                   =================                                           ----------------->AGL1                   ------>ZmHOX2a(2)                                           ----------------->AG                   --------->ARR11(3)                                           <-----------------AGL2                 <---------AGP1                                           <-----------------AGL1               ----------->ARR10                                           ----------------->AGL2             <----------DOF2 <------MYB83                                          <-----------------AG             --------->ANAC58  <------- ----------------->AGL1                   <-----------GT1               <---------PCF5       -------- -----ICU4                                ---------->ID1                <---------PCF2      <-------- ----AHL20(2)                             <-----------------AGL1        --------->TCP16(1)  <--------P ----YAB1                                <-----------GT1                --------->PCF2      --------- --->AHL20(2)                        <---------YAB1--------->LBD16      --------->TCP15(1)<---------MYB46(3) ---AHL20(2)                  ----------->GT1<---------DAG2             --------->TCP20   <---------DEAR3(2) -->AHL20(2)             --------->HSFB2a(2)<---------------AGL15       --------->PCF5 ------------>AtMYB77 -->AHL20(1)       <---------TOE2(3)<---------AHL20(1)    --------->MYB52(1)<------NtERF2<---------DEAR3(1) ---AHL20(1)<-----------RAV1(2)     <---------AHL20(2)    ---------->DOF2  --------->ANAC58<-------GAMYB   attacaaaaatgggccaggctaatgttcgagattgtattattttttccttttcgggaaactaaagggagcgatgggcccgctttgatctggacggttggg  9045100                                                                                         --------->MYB52(1)                                                                                        ----------->HVH21                                                                                       ------>ZmHOX2a(2)                                                                                      <------ZmHOX2a(2)                                                                                      --------->CCA1(2)                        <---------MYB52(1)                                           <---------ARR11(3)                       <---------RAP2.6(3)                                           --------->ARR11(3)                      <---------MYB46(3)                                             --------->AGP1      <-----------RAV1(2)                                                            <---------AGP1  <----------DOF2   <---------At4g35610                                          ---------->DOF2 ----ANAC46 <---------HSFB2a(1)                                               --------->LBD16 ===============HOX2a_HOX2a                                                  --------->HSFB2a(2) --MYB46(3) --------->HSFC1(2)                                               <---------HSFB2a(2) ->ALFIN1   <---------HSFC1(2)                                        <<<<<<<<<TBF1 --------->RVE1(1) -MYB52(1)  --------->HSFB2a(1)                               <---------CCA1(2)--------->LBD16     <- >ALFIN1 <------ZmHOX2a(1)    <-------TEIL              ---------->DOF2     <---------LBD16      <---   gatgctttgcaggaggcttctcagccgttagattcaaatctaagagttgaaagttattcaaagcttatcttcttcttctcccgaaaagatctaacagagt  9045200  Previous    Next  AGI:  At2g21060.1    Description:  ATGRP2B (GLYCINE-RICH PROTEIN 2B); nucleic acid binding. Identical to Glycine-rich protein 2b (GRP2B) [Arabidopsis Thaliana] (GB:Q38896); similar to CSDP2/GRP2 (COLD SHOCK DOMAIN PROTEIN 2, GLYCINE RICH PROTEIN 2), nucleic acid binding [Arabidopsis thaliana] (TAIR:AT4G38680.1); similar to Glycine-rich protein 2 (GB:P27484); contains InterPro domain Cold shock protein; (InterPro:IPR011129); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain Cold-shock protein, DNA-binding; (InterPro:IPR002059); contains InterPro domain Zinc finger, CCHC retroviral-type; (InterPro:IPR013084); contains InterPro domai Range:  from: 9043874    to: 9044731    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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