Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                               xxxxxxxx                                                                                             <-------                                                                                            ---------                                                                                            <--------                                                                                          <---------TOE2(3)          --------->STY1(1)                                                               xxxxxxxxxxx          <---------STY1(1)                                                               <---------TOE1(3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                               <---------AHL20(2) -------->HAHB4                                                                    xxxxxxxxxxxxxxxxxx --------->ATHB12                                                                 <---------MYB52(1) --------->ATHB51                                                                ----------->GT1 <--------HAHB4                                                                  <xxxxxxxxxxxxxxxxxxx <---------AHL20(2)                                                             <---------HSFB2a(2) <---------ICU4                                                              <---------MYB52(1) -------->ATHB1                                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --------->YAB1                                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ---------ATHB51                                                         <-----------------AGL1 <---- ---------YAB1         --------->ARR14(2)    <-------TEIL                ----------------->AGL1 <---- -------->ICU4         <---------ARR14(2) <---------ANAC58    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ------>YAB1  <---------ANAC58    <---------MYB52(1)          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) -------ICU4  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <---------ANAC46 <------ZmHOX2a(1) xxxxxxxxxxxx ------AHL20(2) <-------GAMYB<-----------HVH21       <---------LBD16  <xxxxxxxxxxxxxxxxsmallRNA(s) ----->AHL20(2) --------->ALFIN1 ----------->GT1  <----------DOF2  <xxxxxxxxxxxxxxxxsmallRNA(s) <---- --AHL20(2)   <---------ANAC58 <---------ANAC46  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --------->AHL20(2) --YAB1   xxxxxxxxxxxxxxxx>smallRNA(s)    <---------ANAC58  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <-   taattattagccctaggcgtttgggtattcgggtcgggtattttgggttcgggttttcgggtttagaagtttaggacccgttcgggtaatttaagatttc  8862000                                                                            <---------ANAC58                                                                            <---------ANAC46                                                                      <---------AHL20(2)                                                                      --------->AHL20(1)                                                                      <---------AHL20(1)                                                                     --------->AHL20(2)                                                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                               <---------ARR11(1)        <------MYB83                                           --------->GLK1(2)        <------MYB46(1)                                        <---------ARR14(2)       --------->MYB59                                        <---------CCA1(2)      <-------TEIL                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <---------ANAC46                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxx>smallRNA(i)                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --GLK1(1)                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) >ARR11(3)    <---------ANAC58                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -ARR11(3)<---------MYB52(1)               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxx>smallRNA(s)<------MYB83             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxx>smallRNA(le3)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxsmallRNA(si3)<------MYB46(1)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) -----ANAC58  <---------ANAC58     --------->AHL20(1)     xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) -----ANAC46  <---------ANAC46     <---------AHL20(1)   <---------ANAC58    <---------ANAC58 xxxx>smallRNA(i)<---------MYB46(3)--------->ARR11(3)   <---------ANAC58    <---------ANAC55(2) -----ANAC58 <---------MYB46(3) --------->AHL20(2)      <---------ANAC46  <---------AHL20(2) ----------HVH21--------->ALFIN1<---------AHL20(2)    <---------ANAC46--------->AHL20(2)   gggtcgggttcggtttgggtgggtttgagtttatttatatattgaaatatcaaattttgtgtgcaaatctattaaattacttgaaaatttcaaaaattcc  8862100                            <---------ARR11(3)         --------->CCA1(1)                           <---------CCA1(2)           --------->RVE1(1)                          <---------ARR11(3)       --------->AHL20(2)                          --------->ARR11(3)       <---------AHL20(2)                          <---------AHL20(1)      --------->YAB1                   <---------AtLEC2               --------->AHL20(2)                   <---------ANAC46            <---------ICU4                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                   <---------ANAC58           --------->AHL20(2)            <-----------GT1                   <---------ANAC58           <---------AHL20(2)         <---------AHL20(1)                 <---------YAB1               <---------ATHB51           --------->ARR11(3)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------AHL20(2)     --------->AHL20(1)            ----------->ARR10 >>>>>>>>>RAP2.2 --------->ICU4             <---------ICU4        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)--------->AHL20(2)          <---------ARR11(3)      xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)--------->ANAC46            ------>ZmHOX2a(1)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <---------AHL20(1) --------->RVE1(1)              ------   caaaacaacacgagtagttttgcttgaatatatctaaaaatacacaaaataattaaaatatccaaaaaatcctaatattttctatatataagtataaata  8862200                                                                                               <xxxxx                                                                                               <xxxxx                                                                                            xxxxxxxxx                                                                                            xxxxxxxxx                                                                                           --------->ARR14(2)                                                                                           xxxxxxxxxx                                                                                           xxxxxxxxxx                                                                                           xxxxxxxxxx                                                                                           xxxxxxxxxx                                                                                           <---------ARR14(2)                                                                                           xxxxxxxxxx                                                                                          xxxxxxxxxxx                                                                                          xxxxxxxxxxx                                                <---------TOE1(3)                         xxxxxxxxxxx                                               <-----------RAV1(2)                        xxxxxxxxxxx                                             xxxxxxxxxxxxxxxx>smallRNA(s)              xxxxxxxxxxxxxx                                      --------->ARR14(2)                               <xxxxxxxxxxxxx                                      <---------ARR14(2)                               xxxxxxxxxxxxxx                                   --------->ANAC55(2)                           ------>ZmHOX2a(2)                                   --------->ANAC55(1)                          <------ZmHOX2a(2)              <---------YAB1       <---------ANAC55(2)                         --------->ARR14(2)            <---------AHL20(2)     <---------ANAC55(1)                         --------->ARR11(3)        <---------AHL20(2)        <-------TEIL<-------TEIL                     <---------ARR14(2) <xx       --------->AHL20(1)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <---------ARR11(3)<xxx       <---------AHL20(1)         <-----------------------TaNAC69(2)           --------->AGP1xxxxxxxx     --------->AHL20(1)         --------->ARR14(2)       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<xxxxxxx     <---------AHL20(1)  <---------YAB1 xxxxxxxxxxxxxxxx>smallRNA(i)           <---------AGP1xxxxxxxx --->YAB1   --------->AHL20(2)  <---------ARR14(2)  <-------TEIL             ----------->ARR10<xxxxxx   taactaatatatatttatatttgaaatatgtttggatacgtattcgggttcaggttcgagttttttgggttttgaagtttagatctgttcgagtatttga  8862300                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                          xxxxxxxxxxxxxxxx>smallRNA(s)                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              --------->LBD16              ------>NtERF2             <---------ALFIN1             --------->ANAC58             ------->GAMYBxxxxxxxxxxxxxxxx>smallRNA(i)             --------->ANAC58             --------->ANAC46            <---------MYB55(2)                     --------->AHL20(2)            --------->MYB46(3)                     <---------AHL20(2)         <---------ALFIN1<---------ANAC58          <-----------TBP        <-------TEIL   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        --------->SPL7 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     <xxxxxxxxxxxxxxxxsmallRNA(le3)              <---------AHL20(2)     <xxxxxxxxxxxxxxxxsmallRNA(i)                --------->AHL20(2)    --------->HSFB2a(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   <---------ANAC46  xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   <---------ANAC58 <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   <---------LBD16 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   <xxxxxxxxxxxxxxxxxxsmallRNA(le3)              ----------->TBP   <---------ANAC58xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <---------LBD16  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------AHL20(2) xxxxxxxxxxxxxxxxsmallRNA(si3)                 ----------->TBP xxxxxxxxxxxxxxxxxsmallRNA(se3)                --------->AHL20(2) xxxxxxxxxxxx>smallRNA(si3)                    <---------AHL20(2) xxxxxxxxxxxxx>smallRNA(si3)                 ----------->TBP xxxxxxxxxxxxx>smallRNA(si3)                 --------->AHL20(2) xxxxxxxxxxxxx>smallRNA(le3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxx>smallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxsmallRNA(i)--------->AHL20(1) xxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxx>smallRNA(se3) <---------ANAC58  --------->AHL20(2) xxxxxxxxxxxx>smallRNA(si3)<------NtERF2   <---------AHL20(2) xxxxxxxxxxxx>smallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxsmallRNA(le3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxx>smallRNA(si3)<xxxxxxxxxxxxxxxxsmallRNA(si3)<---------AHL20(1) xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        ----------->TBP                              <------------ xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   ----------->GT1 <---------AHL20(2)   <----------DOF2 ----------- xxxxxxxxxxxx>smallRNA(si3)------>NtERF2 ----------->TBP <---------AHL20(2)             ------------- xxxxxxxxxxxxxxxxsmallRNA(se3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    <---------GLK1(1)============== xxxxxxxxxxxxx>smallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     --------->GLK1(1)<------------- xxxxxxxxxxxxxxxxsmallRNA(se3)<----------DOF2<---------AHL20(2)   <---------WOX13(1)   --------------   aaatttcgggtacacccgcctcaataggcgggccttatctagtatatatatatatatatatttttgtgatggatttctttctgtctctctctatatatag  8862400                          <----------DOF2                         <---------------AGL15                  <---------YAB1                 --------->AHL20(1)                 <---------AHL20(1) --------->AHL20(2)      --------------->AGL15 <---------AHL20(2)     ----------------->AG ---AGL15        <---------AHL20(2) >TBP --------->YAB1    ----------------->AGL1 -->AGL15       --------->YAB1         *TSS                           <---------ANAC58 =========================================MADS_MADS      <---------GLK1(1)                          < ----AGL3       --------->AHL20(2)     ---------->DOF2   --------->GLK1(1)          <---------YAB1  - --->AGL3   --------->AHL20(2)<---------TOE2(3)    <----------DOF2    <---------ANAC58     --------->ZAT6   catataaatgaaaatgaattatatttgcctttaagggagaagaaagagacttactttggatatcaaaacatgtcttgctctctattctaattaagtctag  8862500                                                                                    <------NtERF2                                                                                   ----------->RAV1(1)                                                                                   ------>NtERF2                                         <---------ARR14(2)                       ----------->HVH21                                         --------->ARR14(2)                       <---------ETT(2)                                         <---------ARR11(3)                       --------->DEAR3(1)                                  <---------YAB1                                 --------->RAP2.3(1)                                 <---------AHL20(2)                             <---------ATERF1(1)                                 --------->AHL20(1)                             --------->LBD16                                 <---------AHL20(1)                             ------>NtERF2           <-------TEIL         --------->YAB1       --------->ICU4            <---------DEAR3(1) ---      ----------->RAV1(1)       --------->AHL20(2)   <---------YAB1  <---------At4g35610      <------     --------->REM1(1)      <---------YAB1 ------>ZmHOX2a(2)         --------->At4g35610  --------->CCA1(2) ---------ARR14(2)    <---------CCA1(2)  <---------AGP1 <---------WOX13(1)<-----------HVH21 <-------- -------->ARR14(2) --------->TOE2(3)     --------->ARR11(3)  ------>ZmHOX2a(2)<---------LBD16<-------   cctatctacaacatacataaacctctatctacgattatatttggatctacaagtgaagattgatcgatgttagctctgtctccggcgacaagagatggtt  8862600                                                                                   ------>NtERF2                                                                                  --------->WRKY38(1)                                                                                  --------->WRKY12                                                                                  --------->WRKY45                                                                                --------->At4g35610                                                                           --------->ARR14(2)                                                                        --------->HSFB2a(2)                                                                       <---------LBD16                                  >>>>>>>>>GATA-4                    --------->ARR14(2)                                  >>>>>>>>>GATA-1                    <---------ARR14(2)                                  >>>>>>>>>GATA-3                    --------->GLK1(2)                             --------->ALFIN1                      --------->HSFC1(2)                             <---------ANAC46                      <---------HSFB2a(1)                           <---------ANAC46                        <---------HSFC1(2)                           <---------ANAC58                      <------ZmHOX2a(1)----------->HVH21                           <---------ANAC58                   <------ZmHOX2a(1) <---------At4g35610                         <-----------HVH21<---------YAB1    --------->ALFIN1<---------GLK1(1) <---------DEAR3(1)    <-------TEIL    <---------YAB1      <------ZmHOX2a(1)--------->GLK1(1)  ------ -------->HVH21  <---------ANAC58 >>>>>>>>>GATA-2 <---------LBD16==================================== -GAMYB<-----------HVH21--------->ANAC55(2)--------->YAB1--------->ALFIN1  <---------ARR14(2)-------- -AtMYB61        <---------ANAC58 --------->ARR14(2)    <------ZmHOX2a(1)--------->LBD16     <------- --MYB46(3)    --------->GLK1(2)  <---------ARR14(2)--------->LBD16--------->HSFB2a(1)    --------->At5g28300   gcgacggagcgtcagagtttcttgatacgtcgtgtggattcacgattataaacccggaggaggaggaggagtttccggatttcgctgaccacggtgatct  8862700                                      <------NtERF2                                     --------->LBD16                               --------->LBD16                                     <------NtERF2                         ------>ZmHOX2a(2)                                   <---------LBD16                        <------ZmHOX2a(2)                                   <---------ANAC46                      <---------ARR11(3)                                 --------->TCP20                         --------->ARR11(3)                                <---------RAP2.6(2)           <------ZmHOX2a(2)   --------->LBD16      --------->ATHB12          --------->ALFIN1             --------->ARR14(2)   <---------LBD16     <---------YAB1           --------->ALFIN1               <---------ARR14(2)  <---------LBD16     --------->ICU4           <-----------RAV1(1)     <---------ANAC58   --------->AGP1--------->GLK1(1)   --------->bZIP60(1)      <---------ANAC46          <---------ANAC58  --------->GLK1(1)          <-   <---------bZIP60(1)      <---------ANAC58          <---------ANAC46 ----------->ARR10  <---------- >ZmHOX2a(2)                <---------ANAC58       ===============================HOX2a_HOX2a    ---- =HOX2a_HOX2a         <---------AHL20(1)           ==============================HOX2a_HOX2a  ------- ->ARR11(3)           <---------ARR11(3)           ------>ZmHOX2a(1) --------->LBD16   <---------GLK1(1) --ARR11(3)           --------->ARR11(3)           ==================HOX2a_HOX2a<---------LBD16 <----   tcttgacatcattgacttcgacgatatattcggtgtggccggagatgtgcttcctgacttggagatcgaccctgagatcttatccggggatttctccaat  8862800                                                                                --------->DAG2                                                                           --------->LBD16                                                                          --------->HSFB2a(2)                               <---------ANAC46                           <---------HSFB2a(2)                             <-----------HVH21                            <---------LBD16                            =================================================MYC_MYB    ------->TEIL            <---------bZIP60(1)                          <---------LBD16 --------ANAC55(2)          --------->O2                             --------->MYB111(1) -GT1                       --------->TGA1a                     <---------TOE2(3) ----->YAB1                 <---------TGA1a                    --------->MYB52(1)----------->GT1    - -->WOX13(1)                --------->bZIP60(1) <---------WRKY38(1)  <---------MYB46(3)         ----- -----ATHB12                <---------O2       --------->WRKY18(1)  <--------P---------->DOF2   -----   cacatgaacgcttcttcaacgattactacgacgtcggataagactgatagtcaaggggagactactaagggtagttcggggaaaggtgaagaagtcgtaa  8862900  Previous    Next  AGI:  At2g20570.1    Description:  GPRI1 (GOLDEN2-LIKE 1); transcription factor. similar to GLK2 (GOLDEN2-LIKE 2), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G44190.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69795.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding (InterPro:IPR014778); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447) Range:  from: 8862439    to: 8864837    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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