Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                 <---------ICU4              --------->ICU4            --------->ATHB51            --------->YAB1            <---------ICU4            --------->AHL20(2)            <--------ATHB1            <---------AHL20(1)                   --------->AHL20(2)      <-----------GT1                           --------->AHL20(2) -------->AHL20(1)                              <---------AHL20(2)             ------------>MYB.PH3(1) ---------AHL20(1)                          --------->AHL20(2)                 --------->MYB52(1) ---------ARR11(3)<-----------GT1        <-----------GT1         --------->AHL20(2)             <---- ---->YAB1 --------->ICU4           --------->AHL20(2)           <---------AHL20(2) <---------MYB52(1) ----ATHB12<---------ATHB51        <---------ATHB12             <---------AHL20(2)----------->GT1 ->WOX13(1)<---------ATHB12      --------->WOX13(1)   <-----------GT1 ----------->GT1  <---------YAB1   aatatttttcacaataatttttacaaaattgacatcaatgaaataactaaataattttactactattttaaatagcaaaataaacggttatgagtgattt  8557000                                                  --------->AHL20(2)                                          <---------AHL20(2)                          <---------MYB52(1)  --------->AHL20(2)                <---------ARR11(1)                         --------->TOE2(3)--------->AHL20(2)                    <---------ARR14(2)                 <---------ANAC55(1)  --------->AHL20(1)                        --------->ARR14(2)                 --------->ANAC55(2)  --------->AHL20(2)                       <---------CCA1(2)                 <---------ANAC55(2)  <---------AHL20(1)           <---------ANAC46  ---------->DOF2             <---------GLK1(2)        <---------AHL20(2)          ---------->ID1------->TEIL -----AHL20(2)   <---------ANAC46 <---------YAB1  <---------AHL20(2)           <---------ARR14(1)   <   tatctaaaaatgttagattatgtgttcccttaatttctaattaattaaaaatataaatttttagttttgtcgtttatcagcgtatctaaaagttttcttc  8557100                                                                       --------->LBD16                                                                      --------->TGA1a                                                                      <---------O2                                                                      --------->O2                                                                      ==========================bZIP_DOF                                                                     <---------LBD16                                                                    --------->MYB52(1)                                                                   ----------->HVH21                                                             <---------At4g35610     ---------->DOF2                                                             --------->At4g35610  --------->TOE2(3)                                --------->AHL20(2)          --------->DEAR3(1)   <---------ANAC55(2)             <---------LBD16    <---------AHL20(2)          --------->RAP2.6(2)  --------->At4g35610<      <---------At4g35610      --------->AHL20(2)        ------->GAMYB<---------TGA1a================     <---------ALFIN1 ---------->DOF2                    =======================MYC_MYB    --------->WOX13(1) ---------ATHB12  --------->GLK1(1)                     --------->MYB46(3)   <-----------HVH21-------   caatcttccactgccttcggaactcaaagaaaattaaaatcaaatttttagtaatataacagccgctcactcacggggctgtcacctaaaagtctatcac  8557200                                                                                  <---------ANAC58                                                                                  <---------ANAC58                                                                                 <---------At4g35610                                                                              --------->ZAT14                                                                        <-----------TGA1                                                                        <-----------HVH21                                                                       ==============================                    <---------YAB1                                     ==============================bZIP_DOF                  --------->RVE1(1)                                    ==============================               <---------AHL20(2)                                      --------->ANAC46              <---------AHL20(2)                                       --------->ANAC55(1)              --------->AHL20(2)                                       --------->ANAC58           --------->WOX13(1)                                          <---------O2       --------->bZIP60(2)                                             --------->TGA1a       =================================bZIP_DOF                       --------->O2       <---------O2<---------ARR11(3)      <---------At4g35610         --------->ANAC55(2)       --------->TGA1a                     --------->At4g35610         <---------ANAC55(2)       --------->ANAC58                --------->ANAC58                <---------TGA1a       --------->O2--------->ARR11(3)  --------->ANAC58                --------->ANAC58       --------->ANAC58          --------->ARR11(3)                    ==============================       --------->ANAC46          <---------ARR11(3)                    --------->bZIP60(2)     <---------ALFIN1        ---------->DOF2      ------>ZmHOX2a(1)   <-----------STF1 ---------ATHB12  --------->CCA1(1)    --------->ANAC46   ----------------------->TaNAC69(2) ================bZIP_DOF --------->HSFB2a(2)    --------->TOE1(3)   <---------ALFIN1               < -->YAB1<-----------HVH21 <---------HSFB2a(2)    --------->TOE2(3) <---------ALFIN1       <----------DOF2   aaatcatccacgtcaattaaatatccttgtggaaaggtctcaagccgctgtccttaacctctgcatcacacacacgtcactgtagcttctcactttcgat  8557300              ---------->DOF2         <---------MYB46(3)        <--------P       <-------GAMYB       --------->At5g28300      <---------MYB46(3)     <---------DEAR3(1)    --------->LBD16    <---------LBD16                                                <---------CCA1(2)   ------->GAMYB                        <------MYB46(1)            --------->GLK1(1)  --------->MYB46(3)                    <------MYB83 --------->DAG2<----------TaMYB80 <---------At5g28300                   --------->MYB59     <----------DOF2       --------->At4g35610 ================MYC_MYB             <---------MYB52(1)  <---------MYB46(3) --------->ZAT14 ==========MYC_MYB           <-----------GT1       ---------->DOF2 <---------GLK1(1) ==========MYC_MYB      --------->AHL20(2)    <-----------GT1     ---------->TaMYB80           *TSS -----------GT1         --------->ICU4 <---------AtMYB61--------->ALFIN1    <---------ZAT14  --------   tttaaccgcggttgataaaagcagaaatatttaaccatggttaggttttaacccaaaggtggtttaagtatatcccactactcagcatcagtttataaag  8557400             <------NtERF2            --------->LBD16           <---------ANAC46                                                                        --           --------->ETT(1)                                ------->TEIL       <---------ANAC58    ---      <----------DOF2                            ------>MYB83                 <---------ANAC46------- ---------->DOF2--------->ARR11(3)               ------>MYB46(1)              <---------ANAC58<------ -->DOF2  <---------LBD16                      --------->AtMYB61     <-----------GT1    ----------->GT1   aagtaaagctttgccggagatttagcaaacacaaacacaaaaaacaaaaccaactcagacgaatgtgattttttcttcttgagtgaattgttgtaaaaaa  8557500                                                                       --------->MYB52(1)                                                                      ----------->HVH21                                                                     ------>ZmHOX2a(2)                                                                    --------->CCA1(2)                                                                    <------ZmHOX2a(2)                                                                   <---------ARR14(2)        --------           <-----------ARR10                                       --------->ARR11(3)    --------->HSFB2a(2)           --------->GLK1(2)                                       <---------AGP1        <---------ANAC55(2)          <---------GLK1(2)                                        --------->AGP1        --------->ANAC46     ------>ZmHOX2a(2)                                             <-----------ARR10     --------->ANAC58  --------->ATHB12                                                 <---------ARR11(3)    --------->ANAC58 <---------YAB1                                ============================HOX2a_HOX2a   --------->ANAC55(2) ------->YAB1                                  ------>ZmHOX2a(1)   --------->ARR14(2)    <---------HSFB2a(2) ------>ICU4                                   =============================HOX2a_HOX2a <---------LBD16 -->AHL20(2)                          <-------TEIL        <----------DOF2              <-----------GT1 ---AHL20(2)                    --------->MYB52(1)        <---------DAG2            <---------ICU4   atgatgatcggagaatctcatcgtggttttaatccaacggttcatattcctccatggccactttctgaagatctaacggtgtctgatatttacggaagtc  8557600                                                                                         <---------LBD16                                                                                      ------>ZmHOX2a(2)                                                                                     --------->GLK1(1)                                                                                    <-----------ARR10                                                                                    --------->ARR14(2)                                                                                    <---------ARR11(3)                                                                                   <---------ARR14(1)                                                                                  --------->LBD16                                                                                <---------LBD16                                                                                ------>ZmHOX2a(2)                                                                               --------->CCA1(2)                                                                              --------->AGP1                                                                              --------->ARR14(2)                                                                              --------->ARR11(3)                                                                              <---------ARR14(2)                                                                        <---------ARR14(2)                                                                        --------->ARR14(2)   <-------                                                                    <---------LBD16<---------CCA1(2)                                                                    ------>ZmHOX2a(2)<---------GLK1(1)                                                                  <---------ARR14(2)<---------AGP1 <-                                                          <---------MYB52(2) <---------At4g35610   --                                                    --------->LBD16<------ZmHOX2a(2)<---------ARR11(1)                                             <---------ARR11(3)   --------->ARR14(2)<---------ARR14(2)                         <----------DOF2   --------->DOF5.7(2)  --------->LBD16--------->ARR14(1)  <-                       --------->HSFC1(2)  <---------MYB52(1)------->TEIL   ----------->ARR10--------                       <---------HSFC1(2) --------->TOE1(3)  --------->MYB52(1)<------ZmHOX2a(2) ----      <------ZmHOX2a(1)<---------HSFB2a(1)--------->TOE2(3) --------->MYB52(1)<---------GLK1(2)<----- ->GLK1(1)     <---------YAB1<---------At4g35610    <-----------HVH21 --------->LBD16<------ZmHOX2a(2)   cagacggaggaagtagtatgatggaagctttggctgagttacaacgttatcttccgtcaaacgaaccggatccggattcagatccggatctctcgggtcc  8557700                                                                                      ----------->HVH21                                                                                    <---------WOX13(1)                                                                                  --------->ATHB12        <---------ATHB12                                                      ------------>ATHB5       ------>MYB83                                                        --------->ATERF1(1)       ------>MYB46(1)                                                     <------NtERF2     --------->MYB46(3)                                                   --------->LBD16  <-----------GT1                                                         <------NtERF2 --ARR14(2)                                                               <---------ATERF1(1) --------GLK1(2)           <------ZmHOX2a(2)                             <---------DEAR3(1) ------->ARR14(2)    --------->TOE1(2)                                  <---------ANAC46 --------ARR14(2)    --------->TOE2(2)                                  <---------LBD16            <- ->ARR14(2)   <---------ANAC46                                      <-------PIF5 --------->ICU4    -- ----->LBD16  <---------ANAC58                              --------->ALFIN1 ------>NtERF2     ------ ----LBD16    <---------ANAC58   <---------LBD16 ---------->DOF2    ------->PIF5 <---------YAB1<-----   ggattcaccaatcgatgcttatacatgcgatcattttcggatgtatgagtttaaagtgagacgttgtgctcgtggccggagccatgattggacggagtgt  8557800                                                                                        =============                                                                   <---------ARR14(2)  --------->MYB55(2)                                            <---------HSFC1(2)     --------->ARR14(2)  --------->MYB111(2)                                      <---------LBD16           <---------ANAC46       <---------MYB46(3)                                      --------->LBD16           <---------ANAC58   <---------TOE2(3)                                     <---------TOE1(1)       <---------DEAR3(1)    <---------TOE1(3)                              <---------ANAC46              --------->SPL7       ---------->DOF2            --------->LBD16  <------NtERF2  --------->HSFC1(2)  <---------ANAC58 ==================== --------->SPL7             <---------RAP2.6(3)           <---------SPL7      <---------ANAC58 --------SPL7      --------->DAG2    <---------TOE2(1)   --------->LBD16      <---------ANAC58 ---->ZmHOX2a(1)  ---------->DOF2   ------>ZmHOX2a(2)  <---------LBD16 ------>ZmHOX2a(1)<-------GAMYB --->ZAT18 --------->LBD16  ------>NtERF2<------ZmHOX2a(1)<---------MYB52(1)  <---------ANAC46 ----ZAT18<---------LBD16  --------->DEAR3(1)  <-------TEIL --------->SPL1(2) <---------ANAC55(2)   <   ccttacgctcatcccggagaaaaagctcgccgtcgtgatccgaggaagtttcattactccggtacggcgtgtcctgagtttcgtaaaggttgttgcaaga  8557900  Previous    Next  AGI:  At2g19810.1    Description:  zinc finger (CCCH-type) family protein. similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT4G29190.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN81808.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) Range:  from: 8557395    to: 8558940    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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