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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                     ------>ZmHOX2a(2)
                                                                                    <------ZmHOX2a(2)
                                                                                    --------->CCA1(2)
                                                                                   <---------ARR11(3)
                                                                                   <---------ARR14(2)
                                                                                   <-----------ARR10
                                                                                   <---------AGP1
                                                                                   --------->ARR11(3)
                                                                                   --------->AGP1
                                                                                   --------->ARR14(2)
                                                                                  <---------CCA1(2)
           --------->AtMYB61                                                   <------NtERF2
           --------->DEAR3(1)                                                 ----------->RAV1(1)
        --------->ANAC46                                                      <-----------HVH21
<---------At4g35610                                                          --------->RAP2.3(2)
------>NtERF2                                          <---------ALFIN1      --------->RAP2.3(3)
--------->At4g35610                                  <---------ALFIN1        --------->ANAC46
-------->RAP2.3(2)                             --------->ANAC46              --------->DREB2C(2)
-------->DEAR3(1)                              --------->O2                  --------->DEAR3(1)
------->RAP2.3(1)                              --------->bZIP60(2)           --------->ATERF1(2)  --
--->NtERF2<---------MYB55(2)                   --------->TGA1a               <---------ATERF1(2)  <-
-------ATERF1(1)                             <---------ALFIN1                --------->RRTF1(2)   --
------>LBD16                              --------->PCF2                    --------->ATERF1(1)  ---
------ALFIN1         <---------ANAC58    <-----------HVH21                  --------->ERF1  --------
----->DEAR3(1)       <---------ANAC58   --------->ALFIN1   --------->ANAC55(1)------>NtERF2---------
----->ANAC46     ========================================bZIP_DOF           --------->RAP2.3(1)<----
>ZmHOX2a(1)<---------ALFIN1            <---------HSFC1(2) ------->MYC3      --------->ORA47(2) -----
----ATERF1(1)    <----------DOF2       --------->HSFC1(2) <-------MYC3     <---------RAP2.3(1) -----
---ALFIN1 --------->MYB46(3)          <---------O2  --------->ANAC46       <---------ATERF1(1)------
 
cgccgctgtttccaccaccgctttgcctacaatccctagcgaagtgtcccacatcaccacacatgtaacattcaccttcgccgccagatctacgaccacc  7771900
                                                                                               <----
                                                                                               -----
                                                                                               <----
     ---------->DOF2                                                                      --------->ANAC46
 --------->AtMYB61                                                                        --------->O2
------->DEAR3(1)             <-----------TGA1                                            <---------LBD16
--------ALFIN1               <-----------HVH21                --------->LBD16          ------>ZmHOX2a(2)
------->AtMYB61             --------->DEAR3(1)        -------->P                      <------ZmHOX2a(2)
------>MYB46(3)             --------->DREB2C(2)       ------>MYB46(1)                <---------TCP20
->AtMYB61                   --------->ANAC46          ------>MYB83 --------->AHL20(2)--------->ARR14(2)
>MYB46(3) <----------DOF2<---------ALFIN1           <---------MYB59--------->YAB1    <---------TCP16(1)
-----ALFIN1        --------->AtMYB61                --------->AtMYB61                <---------ARR14(2)
---->AtMYB61       <---------ALFIN1    ------>ZmHOX2a(1)     --------->ANAC46      --------->LBD16
---->DEAR3(1)     --------->MYB46(3)  --------->TOE2(3)   <---------ALFIN1        --------->HSFB2a(2)
--->MYB46(3)    --------->ANAC46      --------->TOE1(3) --------->AtMYB61        <---------LBD16
 
accacctccaaagcttttcccaccacttccaccgtcacaatccttagccatatgaccaacctcaccgcaattaaaacaattacctccggatccacgggag  7772000
                             <------NtERF2
                            ------>NtERF2
                            --------->LBD16
                          <------NtERF2
                          --------->ATERF1(1)
                          <---------LBD16
                         ------>NtERF2
                         --------->ABI4(1)
                         <---------ATERF1(1)
                        --------->RAP2.3(2)
                        --------->RAP2.3(3)
                        --------->ATERF1(2)
                        --------->RRTF1(3)
                        --------->RRTF1(2)
                        --------->DEAR3(1)
                        <---------DEAR3(1)
                        <---------ATERF1(2)
                       --------->ATERF1(1)
                       --------->RAP2.6(1)
                       --------->RAP2.3(1)
                       --------->ORA47(2)
                       --------->RRTF1(1)
                       --------->DEAR4(2)
                       --------->ERF1
                     --------->DEAR3(1)
                     ------->GAMYB
                    --------->MYB46(3)                          <---------DEAR3(2)
                    --------->DEAR3(2)                        <---------MYB52(1)
                   ------->TEIL         --------->TOE2(3)    <-----------HVH21               -------
                 <---------ZAT14   --------->At5g28300       --------->LBD16     <---------ANAC58
        <---------YAB1<---------ATERF1(1)                   <---------ANAC58     <---------ANAC46
-----At4g35610   --------->ZAT14<---------At4g35610         <---------ANAC58     <---------ANAC55(2)
---->At4g35610   --------->ZAT18--------->At4g35610         --------->ANAC46     --------->ANAC55(2)
-----ZAT2     <---------ANAC55(2) ----------->GT1       <----------DOF2          <---------ANAC58
 
ctgttttccttcttattaagtgaaccgccgccgggagcagtaacttcaatggccttagtctttccgtcgcttccaagcgcgatttcgtattcaaccgatt  7772100
                                                                <------NtERF2
                                                               ------>NtERF2
                                                               <---------ATERF1(1)
                                                              --------->RAP2.3(2)
                                                              --------->ANAC46
                                                              --------->DEAR3(1)
                                                              <---------ATERF1(2)
                                                              --------->RAP2.6(2)
                                                              --------->RAP2.3(3)
                                                              --------->DREB2C(2)
                                                              --------->RRTF1(2)
                                                              --------->RRTF1(3)
                                                              --------->ATERF1(2)
                                                             --------->ATERF1(1)
                                                             --------->RAP2.3(1)
             <---------ANAC55(2)                             --------->ERF1
             --------->ANAC58                                --------->ORA47(2)
             --------->ANAC55(2)                            <---------RAP2.3(1)
             --------->ANAC58                               <---------ATERF1(1)
             --------->ANAC46                      --------->DAG2      <---------LBD16
        --------->ANAC58                          ---------->DOF2   --------->ATHB12
        --------->ANAC58               <---------WOX13(1)  --------->ANAC46
     --------->WRKY18(1)             <------ZmHOX2a(1)<---------ARR11(3)                     <------
-->ARR14(2) <---------LBD16        <---------TOE2(3)  --------->ARR11(3)                    <-------
 
caccaagagtcaagctacggaatccatcggagacaattgaggattgatgaacaaaaagctcttcgccgccatcatcgggagtaatgaaaccgtagccttt  7772200
                                         <---------WOX13(1)
                                     <------NtERF2
                                    --------->ABI4(1)
                                    <---------ATERF1(1)
                                    --------->LBD16
                                    ------>NtERF2
                                   --------->DEAR3(1)
                                   --------->ATERF1(2)
                                   --------->RAP2.3(2)
                                   --------->RAP2.3(3)
                             <------ZmHOX2a(2)
                            <---------ARR11(3)
                 <----------DOF2   <---------ATERF1(2)
                 <---------DAG2   --------->DEAR4(2)
             ------->GAMYB  --------->ARR11(3)------>ZmHOX2a(2)
            <---------MYB52(2)    --------->ATERF1(1)
            --------->MYB46(3)    --------->RAP2.3(1)
            <---------MYB46(2)------>ZmHOX2a(2)
            <------------MYB.PH3(2)<---------DEAR3(1)                     ----------->GT1
            <---------MYB111(1)   --------->ERF1                         <---------TOE2(3)
            <---------MYB111(2)  <---------ATERF1(1)                     --------->DAG2
----DOF2   ------>MYB46(1)  <---------AGP1  <---------ARR11(3)         ---------->DOF2
--DAG2     ------>MYB83 <---------MYB52(1)  --------->ARR11(3) <------ZmHOX2a(2)                <---
 
tccatcgctaaaccaactaacttttccgatagatctcgccgccgattgatcttccatcgccattagatcagagaaaaaggttaacaaaaactcgaagcac  7772300
                                                                                                   -
                                                                                              ------
                                                                                              <-----
                                                                                           ---------
                                                                                          <---------
                                                                                          <---------
                                                                                         --------->bZIP60(2)
                                                                                         <---------TGA1a
                                                                                         ===========
                                                                                         --------->TGA1a
                                                                                         --------->O2
                                                                                         --------->ANAC58
                                                                                         <<<<<<<<<<AtbZIP1
                                                                                         ===========
                                                                                         ===========
                                                                                         <---------O2
                                                                                         --------->bZIP60(1)
                                                                 ------->GAMYB           --------->ANAC46
                                                                 ==================================MYC_MYB
                                                              <-----------GT1            --------->ANAC58
                                                         ------>ZmHOX2a(2)               <---------bZIP60(1)
                                                       <---------ARR11(3)               ------>NtERF2
                     ----------->GT1                   --------->ARR11(3)           --------->ANAC46
                    ----------->GT1               --------->STY1(2)                 --------->ANAC58
                --------->ARR14(2)                <---------STY1(2)                 --------->ANAC58
                <---------ARR14(2)      <------------CBF<------ZmHOX2a(2)   --------->TOE1(3) ------
       ---------->DOF2             --------->TOE2(3)   <---------AGP1       --------->TOE2(3) <-----
-------DOF2*TSS<------ZmHOX2a(1)   --------->TOE1(3)   --------->AGP1 <------------CBF <---------ALFIN1
 
tttgttcgtacaaagagaggaaatgggtaaaatgaaaaccctaaattgctacttgctagatctattaaccccaaattgaccttaaattcgccacgtcagc  7772400
                       ------->MYC3
                       <-------MYC3
                       ------->MYC4
                       <-------MYC4
                       <-------MYC2
                       ------->PIF5
                       <-------PIF5
                       ------->MYC2
                      ==================bZIP_DOF
                      <---------O2
                      <---------TGA1a
                      <---------ANAC46
                      --------->O2
                      <---------ANAC55(2)
                      --------->TGA1a
                    <------------OsbHLH66
               <---------At4g35610
               --------->At4g35610
               <-------GAMYB
            <------NtERF2
           ------>NtERF2
           =====================MYC_MYB
           ------------>AtMYB77
           <---------RAP2.3(1)
           <---------ERF1
           ----------->RAV1(1)
          <---------ATERF1(2)
          <---------RAP2.3(2)
          <---------DEAR3(1)
----->ZmHOX2a(1)  <---------At5g28300
--->At4g35610  =================MYC_MYB
----At4g35610 <---------MYB46(3)
>TGA2(2)  --------->ATERF1(2)
--TGA1    <---------RAP2.6(2)
--HVH21  <---------LBD16--------->ALFIN1
========================================bZIP_DOF
========================MYC_MYB
=======================MYC_MYB                       --------->ANAC55(2)                ---------->DOF2
--->ZAT2 --------->At4g35610         <------ZmHOX2a(2)             ----------------->AGL1        ---
----ZAT2<---------RAP2.3(1)  <----------DOF2         --------->ANAC46     <---------TOE2(3)      ---
 
tccttctctatcggcggcagttaccacgtgtgcattttggatcaggcccatggttcacataatgaaatgggcctatttatgtaagagtttcaaaagaact  7772500
                                                                     ------->GAMYB
                                                          --------->YAB1  --------->LBD16
                                           <---------ANAC58       <-----------GT1
          <---------TOE1(3)   --------->TOE1(3)         <-----------GT1------>MYB83--------->LBD16
          <---------TOE2(3)   --------->TOE2(3)  --------->ARR11(3)  --------->AtMYB61
          --------->DAG2      <----------DOF2    <---------ARR11(3) --------->MYB46(3)
------>ANAC58          --------->ZAT6      <---------ANAC58 <---------CCA1(2)    <---------LBD16
------>ANAC58        <-----------GT1 --------->AHL20(2)<-----------GT1 ------>MYB46(1)
 
aagcaaaattgataaggtttgatttcacactaactttaaaaaaaatgcttgagatgttttatcatctcttaaccatccccaaactctgggaattggatga  7772600
                  <----------DOF2
                  <---------DAG2             ----------->GT1
               <-----------GT1           <-------TEIL
             <-----------GT1          --------->GLK1(1)               --------->ATHB12
            <---------ICU4            --------->KAN4(1)              --------->ICU4
            --------->YAB1           --------->ARR14(2)            <---------bZIP60(1)
           <---------YAB1            <---------ARR14(2)            --------->bZIP60(1)
           --------->ICU4            <---------KAN4(2)        <---------ICU4             <---------YAB1
         <--------HAHB4              --------->ARR11(3)      --------->ICU4      <---------YAB1
         --------->YAB1              <---------ARR11(3)   --------->AHL20(2) <---------GLK1(2)     x
        <---------AHL20(2)     ---------->DOF2        ---------->DOF2<---------YAB1 <---------YAB1<-
        <---------YAB1     ---------->DOF2--------->YAB1----------->GT1    <---------TOE2(3)      --
 
aaatgcagtctataattatcactttttgcaaaaagaaagggatattcatagtaaatctaaagtaaatatgacatgatttagattattatgttatacttct  7772700
                           <---------MYB46(3)          <---------YAB1
                         <---------ANAC58        --------->AHL20(1)
                         <---------ANAC58        <---------AHL20(2)
                         <-------GAMYB      <---------ARR11(3)
                        <---------MYB46(3)  --------->ARR11(3)
               <-----------GT1   <-----------GT1 <---------AHL20(1)
      ---------->DOF2  <---------AtMYB61    --------->AHL20(2)         <---------AHL20(2)
xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        <---------AHL20(2)  --------->ARR11(3)
--------HSFB2a(2)   <----------DOF2         --------->AHL20(1) <---------CCA1(2)
------->HSFB2a(2)   <---------DAG2          <---------AHL20(1)<---------AHL20(2)                   <
 
actagaagagaaagtgtttcacacttttggttgttttatctaaacaatatattatattttgatattatatctatttttatgcaacttattttgcatccaa  7772800
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AGI:  At2g17870.1   
Description:  cold-shock DNA-binding family protein. similar to CSDP1 (COLD SHOCK DOMAIN PROTEIN 1), RNA binding / double-stranded DNA binding / nucleic acid binding / single-stranded DNA binding [Arabidopsis thaliana] (TAIR:AT4G36020.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN59784.1); contains InterPro domain Cold shock protein; (InterPro:IPR011129); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain Cold-shock protein, DNA-binding; (InterPro:IPR002059); contains InterPro domain Zinc finger, CCHC retroviral-type; (InterPro:IPR013084); contains InterPro domain Nucleic acid-binding, OB-fold (Int
Range:  from: 7771057    to: 7772312    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
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