Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    ---                                                                                                 ----                                                                                                -----                                                                                                <----                                                                                      --------->GLK1(2)                                                                                      <-----------ARR10                                                                                      --------->ARR11(3)                                                       <------ZmHOX2a(1)              <---------ARR11(3)          --------->ZAT6        <---------YAB1   --------->ZAT14                      --------->ARR14(2) --------ZAT14              <----------DOF2      <---------ZAT14                      <---------ARR14(2) ------->ZAT14              <---------DAG2   <-----------GT1                     ----------->GT1<---- ------>AtLEC2       --------->GLK1(2) ------>ZmHOX2a(1)                  ----------->HVH21     <----   atgcagagcttaagactattgagaatcaagctttatgattcctctattgactatacaggagcattaccagtatcgagtgacaatggaaaatctgtccaac  4324500                                                                             ------>ZmHOX2a(2)                                                                            <------ZmHOX2a(2)                                                                           --------->ARR11(3)                                                                           <---------ARR14(3)                                                                           --------->ARR14(3)                                                                           <---------ARR11(3)                                                                           --------->ARR14(2)                                                               ------>ZmHOX2a(2)                                                       <---------ARR14(2)  --------->AGP1                                                       --------->ARR14(2)  <---------ARR14(2)                                                      ==============================HOX2a_HOX2a       <---------ANAC46                               =============================HOX2a_HOX2a       <---------ANAC58                               <------ZmHOX2a(1)   --------->GLK1(1)       <---------ANAC58                               ================HOX2a_HOX2a ----->P                                            --------->ANAC46      <---------GLK1(1) --->GAMYB                                          --------->LBD16 --------->MYB52(1) ---->MYB46(3)<---------ARR11(3)                   --------->HSFB2a(2)   ----------->ARR10 -----MYB111(1)                                    <---------LBD16 <---------WRKY12 -----MYB111(2)                                    <---------HSFB2a(2) ------->GAMYB -----MYB55(2)--------->ARR11(3)                --------->GLK1(2)  <---------WRKY38(1) <----------DOF2   aaccaggtttcgtcgagattttaacagcgaaatcgactacttcttcagagattccaggaacttgatcgttcaacggagatcttctactactttctctatc  4324600                                                                                 --------->LBD16                                                                                --------->LBD16                                                                              ------>ZmHOX2a(2)                                                       --------->ARR14(2)    <------ZmHOX2a(2)                                                       ------->TEIL         <---------ARR14(2)      -                                                       <---------ARR14(2)   --------->ARR14(2)      <                                                       <-----------ARR10  --------->LBD16           <                                                       --------->GLK1(2) --------->ANAC55(2)       <-                                                      <---------GLK1(2)  <---------ANAC58   ---------                                                    --------->ANAC58     <---------ANAC55(2)<--------                                                    --------->ANAC58     <---------ANAC58   <--------                                                    --------->ANAC46     <---------ANAC46   ---------                                                   --------->LBD16      <---------LBD16    ------>MYB83                                             <---------HSFC1(2)      <-------GAMYB         ------>MYB46(1)                                             <---------HSFB2a(1)    ------>ZmHOX2a(2)    <---------MYB59                   ----------->GT1           --------->HSFB2a(1)  --------->ARR11(3)   --------->ARR11(3)           <------ZmHOX2a(1)                 --------->HSFC1(2)   <---------ARR11(3)   <---------ARR11(3)   tcttagattactaggaaattggagtaaattagatgcgaaattggagaaatttccacgaatctcggctagatcgttgcggatcccgagaagacctagctga  4324700                                                                --------->TOE1(2)                                                               <---------ZAT2                                                            ---------->DOF2                                                           <------ZmHOX2a(1)                                                         --------->LBD16                                                        <-----------RAV1(2)--------->ANAC58                                                       <------NtERF2       --------->ANAC46                                                    --------->ATERF1(1)    --------->ANAC58                                                    <------NtERF2         ------>NtERF2                                                   <---------DEAR4(2)     <---------LBD16                                                   <---------ATERF1(1)  ----------->HVH21                                                   <---------ORA47(2)  ------>NtERF2                                                   <---------DEAR3(2) --------->O2                                                   <---------RAP2.3(1)--------->bZIP60(2)                            --------->MYB52(2)    --------->ALFIN1    --------->bZIP60(1)                           <-------TEIL           <---------DEAR3(1)  <---------bZIP60(1)                         <---------SPL7           <---------DREB2C(2) --------->DEAR3(1) ---------->GT1         <---------ANAC58         <------NtERF2 <---------At4g35610 ------MYB83            <---------ANAC58         <---------ABI4(1)    --------->ANAC46            <-- ------MYB46(1)       <---------ORA47(2)         --------->ATERF1(1)  --------->ANAC58      --------- --------MYB46(3)    <---------RAP2.3(3)       <---------DEAR3(1)   <---------ATERF1(1)     <-------- >ZAT2   <---------YAB1<------NtERF2           --------->ALFIN1--------->ZAT2            <XXXXXXXXXXX -ZAT2 --------->YAB1<---------DEAR3(1)       <------ZmHOX2a(1)--------->At4g35610<---------TOE2(3) - -At4g35610    <------ZmHOX2a(1)      --------->ALFIN1------>NtERF2----------->HVH21<------ZmHOX2a(1) >At4g35610 --------->At4g35610   <-----------RAV1(2)----------->HVH21--------->ANAC58----------->GT1   gttggtgaattatcagaggagagtcggcgttcgtttacaggtggagaaggaggcggtgccaggaaagctgcgacgccacggagtaaggaagataaatctt  4324800                                       ------>ZmHOX2a(2)                                 ------>ZmHOX2a(2)                                 <---------LBD16                               <---------ARR14(2)                               --------->ARR14(2)                           ------>ZmHOX2a(2)                           <---------LBD16                         --------->ARR14(2)                        ======================HOX2a_HOX2a                        ================HOX2a_HOX2a          --------->CCA1(2)       ------>NtERF2    ============================HOX2a_HOX2a      --------->ANAC46 --------->HSFC1(2)             --------->DEAR3(1)      --------->DREB2C(2)<---------ARR14(2)          <---------LBD16      --------->DEAR3(1)<------ZmHOX2a(1)          --------->DEAR3(1)                               < --------DOF2          <---------HSFC1(2)<---------YAB1--------->LBD16                              < >ARR11(3)             --------->HSFB2a(1)    <-----------HVH21                        <---------ANAC58 -ARR11(3)             <---------HSFB2a(1)   ------>ZmHOX2a(2)                         <---------ANAC58 XXXXXXXXXMIR399E <---------HSFB2a(2)--------->ARR14(2)<------NtERF2     --------->ANAC58         <-- ---------->HVH21 --------->HSFB2a(2)<---------ARR14(2)------>NtERF2     --------->ANAC58       <----   ctttgacaccgccatgagttgtggaaggatcgggatcgggatcgtgatcgtcatcgccgcgagatttgaagagccaagacatggtttttgagtgagagag  4324900                                                                                             <-------GAMYB                                                                                            ---------                                                                                            ---------                                                                  --------->AHL20(2)        <--------                                                             <-------TEIL                  <XXXXXXXXX                                                             --------->SPL7         <---------ABI4(2)                                                         --------------->AtSPL3    --------->ANAC58                                    <---------ANAC46     <---------------AtSPL3    --------->ANAC46  <---------ARR14(2)                <---------YAB1       --------------->AtSPL8    --------->ANAC58  --------->ARR14(2)             <---------ARR14(2)      <---------------AtSPL8  ---------->DOF2 ------MYB83                    <-------GAMYB          --------->MYB52(1)     <---------HSFB2a(2) ------MYB46(1)              <-------PIF5             --------->ARR14(2)      --------->HSFB2a(2)<--- ------P                     ------->PIF5             <---------ARR14(2) <---------DAG2   <---------MYB52(1) -----MYB46(3)             <---------LBD16  *TSS    ----------->ARR10 <-----------GT1 ------->TEIL <-   gttggatttggggttttcagttttttttgcacggggttacgaatagcaagagagaagaaacggtacgttttaatacctttccaaaacgcaccgtttgttg  4325000                                             --------->YAB1                                             --------->AHL20(2)                                            <---------YAB1                                          --------->ATHB51                                          <--------HAHB4                                          <--------ATHB1                                          <---------ICU4                                          --------->YAB1        <---------YAB1                   <---------ATHB12 >MYB52(2)        --------->HSFB2a(2)    <---------ATHB51               ------>MYB83        <-------- >MYB55(2)      ------>MYB46(1)          --------->ICU4                 ------>MYB46(1)     --------- -MYB46(3) <-----------GT1           ------------>CBF                 <---------MYB59----------->GT1 XXXXXXXXXXXMIR837-3P  ----------->GT1   --------->AHL20(2)----------->GT1          ----------->GT1 ------ANAC46   ------>MYB83    --------->MYB52(1)        --------->ANAC46<----------DOF2  --------->CCA1(1) --------MYB46(3)----------------->AGL1--------->YAB1   --------->MYB52(1)<---------DAG2   --------->RVE1(1)   tttgttcgttttgataccttcccaaacgtgaaataaacgaacaataattatacaaaataaacggaaacaaaacctactttttaaaacgggaaaatatcgt  4325100                                                                ----------->GT1        <---------AHL20(2)   --------->ANAC55(2)                                          --------->YAB1         --------->AHL20(2)   --------->ANAC46                                            <---------YAB1     <---------MYB52(1)   <---------ANAC55(2)      <---------AHL20(2)           --------->AHL20(2)      --------->LBD16 <-----------GT1           --------->AHL20(2)            --------->AHL20(1)    ------>ZmHOX2a(2) -ARR11(3)           ----------->GT1               <------ZmHOX2a(2)         --------->ARR14(2)     - >ARR11(3)      <---------TOE2(3)       <----------DOF2  <---------AHL20(2)  <---------ARR14(2)    --   tttatacgtgatgtttttaagaatggtcattttatatgtaaacttttagatcgatcaaataaaatatgataaaaatgttgatccgctatttaaacaaaac  4325200                                                        ------->GAMYB                         ------>MYB83                                                ------>ZmHOX2a(2)          ---------->ID1     -------                                               <---------At4g35610       --------->MYB52(2)   ------>MYB46(1)                                               <------ZmHOX2a(2)       <---------MYB52(1)    --------                                              --------->ARR14(2)     --------->TGA1a        <--------       <---------ANAC58                       --------->GLK1(2)      =======================MYC_MYB       <---------ANAC58                       <---------ARR14(2)     <---------TGA1a        <--------       <---------AtLEC2                       <---------AGP1    --------->At4g35610  <---------MYB52(1)       ----------->RAV1(2)               --------->MYB52(1)     <---------At4g35610 <-------GAMYB -------->DAG2                           <-----------GT1=======================MYC_MYB   <-----------GT1 -------->DOF2              --------->TOE2(3) ------->TEIL   <---------MYB52(1)    ----------->GT1   ataaagtttgcctggccaaaatttccgaaatgttaacttgtattaacggatctgataaccctcgttagcagacgttagtcgtcttccgttaataccaaac  4325300                                                                                               <-----         --------->ICU4                                                                   <---------AHL20(1) -->MYB52(1)        --------->TOE2(3)                                                     <---------ARR11(3) ->MYB55(1)         --------->TOE1(3)                              --------->LBD16        --------->AHL20(1) -MYB46(2)<---------------AtSPL8                              <---------ICU4         <---------HSFB2a(2) -MYB59  <---------YAB1--------->AHL20(2) <-----------GT1  --------->YAB1    <-----------GT1 <-------   gattttttgtgatgagtacaaaccttaaaattcccaaatcgatttttcattccctaattcttcataatccccaaaatttgaactattctcgatatatttt  4325400  Previous    Next  AGI:  At2g10950.1    Description:  BSD domain-containing protein. similar to BSD domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G65910.1); similar to BSD [Medicago truncatula] (GB:ABP03855.1); contains InterPro domain BSD (InterPro:IPR005607) Range:  from: 4322493    to: 4324944    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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