Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                          --------->ANAC58                                                                                  <---------MYB52(1)                                                                            ------>ZmHOX2a(2)                                                                           --------->HSFB2a(1)                                                        --------->GLK1(1)  <------ZmHOX2a(2)                                                    --------->ANAC46       <---------HSFB2a(1)                                                    --------->LBD16        <---------HSFC1(2)        <---------ANAC55(1)                        <---------LBD16        <---------ARR11(3)        <---------ANAC58                          <---------LBD16         <---------ARR14(3)        <---------ANAC46                         <---------At5g28300      --------->ARR11(3)        <---------ANAC58                        <-----------GT1           --------->ARR14(3)  <---------MYB46(3)                        <---------RVE1(1)             --------->ARR14(2)  <-----------RAV1(1)                      --------->ARR11(3)             <---------ARR14(2) -->MYB46(1)            <---------MYB52(1) --------->ARR14(2)             <-----------ARR10 -->MYB83--------->LBD16<----------DOF2    <---------ARR11(3)         <---------LBD16   --------->ANAC58 --->AtSPL3        --------->ARR14(2)      <---------GLK1(2)         <---------LBD16   <---------ZAT18 ----AtSPL3        <---------ARR14(2)      <---------ARR14(2)       <---------LBD16    --------->ZAT18 ----AtSPL8     --------->HSFB2a(2)--------->MYB52(1)   <---------GLK1(1)--------->GLK1(1) ----------   acagttgttgccgtgtttgcagaaccctttgttgaagtaatggcagatttttaccgggaactcgggtaaactcggggatcttcggctagttcgcaaaggc  1860500                                                         ------>ZmHOX2a(1)                                                       ------>ZmHOX2a(2)                                                      <------ZmHOX2a(2)                                                     <---------ARR14(2)                                                     --------->ARR14(2)                                                     --------->ARR11(3)                                                     <---------ARR11(3)                                                    <------ZmHOX2a(1)                                               <---------WRKY12                                               <---------WRKY45                                               <---------WRKY38(1)                      --------->ANAC58                                              --------->WRKY18(1)                     <---------AtLEC2                     <---------ARR14(2)     <------MYB83--------->TOE2(3)           <---------HSFB2a(2)      <---------ANAC58                      <------MYB46(1)                         --------->HSFB2a(2)     <---------TOE2(3)     <---------MYB52(1)<-----------HVH21             <---------YAB1  --------->GLK1(1) >DOF2<---------ANAC58    <-----------HVH21<---------MYB46(3)        <---------ARR11(3) --------->ANAC58   aaacattgacgttcttgagagaagaacccgttagagaattcagggctggtcaaaggatcctcaaaattcaagaactgaagattgttctgcaaggtatcca  1860600                                                                                 <---------ARR14(2)                                                                                 --------->ARR14(2)                                                                              --------------->AGL15                                                                              <---------------AGL15                                                                             ----------------->AGL3                                                                             <-----------------AGL3                                                                             ------>ZmHOX2a(2)                                                                             <-----------------AGL2                                                                             ----------------->AGL2                                                                             =======================HOX2a_HOX2a                                              <---------ARR14(2)             ----------------->AG                                    <------ZmHOX2a(1)                        <-----------------AG                       <---------MYB52(1)     --------->ARR14(2)    --------->At5g28300                   --------->MYB52(1)   <---------ARR14(2)      ------->TEIL <-----------------AGL1  <-------GAMYB  ---------->DOF2   ----------->GT1 ---------->DOF2 --------->LBD16           <------ZmHOX2a(1)   tctcggttgaattctcccaaaaaccggttttcatgggaggagaaaccgaaaccgaaagaggcgatgaaccggtgaatgatccaaatttgggagtaggaat  1860700                              --------->GLK1(1)                              <---------GLK1(1)                                       <------ZmHOX2a(1)                       --------->ATHB12                                               ===============                       --------->YAB1                                              --------->YAB1                       <---------ICU4                --------->ANAC58              <---------ICU4                       -------->HAHB4              <-----------GT1               --------->GLK1(2)                      <---------ATHB12   >>>>>>>>>AtCCA1                   --------->MYB52(1)                      --------->ICU4  <---------MYB59--------->ANAC46   --------->ANAC46                      <---------YAB1 --------->STY1(2)                  --------->ANAC55(2)      ----             <---------DEAR3(1)    ------>ZmHOX2a(1) --------->ANAC58   <---------ANAC55(2)  --------        <------ZmHOX2a(1)<---------YAB1  >>>>>>>>>AtLHY                 --------->ANAC55(1)  --------   gtgatcagaaggagggctgtggtaatgatgagaattcctagctaactcgtatttaacgcaattgatgacagaacacataacagaatcaggacagaacgcg  1860800                                                         <---------At4g35610                                                         --------->At4g35610                  <------                                                      <----------DOF2                         -------             <---------MYB46(3)                      ------>ZmHOX2a(2)                        -------            <------NtERF2                           <------ZmHOX2a(2)                         <------            <---------ANAC46                       --------->ARR11(3)                      <---------ANAC58        <-----------HVH21                          <---------ARR14(2)                      <---------ANAC46       <-----------RAV1(1)                         <---------ARR11(3)                      <---------ANAC58    <------ZmHOX2a(2)    <---------ANAC58          <---------ARR14(3)                --------->GLK1(2) ==========HOX2a_HOX2a   <---------ANAC58          --------->ARR14(2)               <---------ARR14(2) ------->HVH21<-------GAMYB                        --------->ARR14(3)               <---------GLK1(2) ->ANAC58  <---------LBD16                         <-----------ARR10          --------->MYB111(2) ->ANAC58 <---------ANAC46                     ---------->DOF2                <---------MYB46(3)   agacggatcatgtcgcggttgccattttcttgcatcaacaagagataaccaaagatctttgctgcattctctggttcaagttgttggattctggcgtgca  1860900                                                                                            <--------      <---------WOX13(1)                                                                 --------->ICU4    --------->ATHB12                                                                   <--------HAHB4   <-------TEIL                                                        --------->WOX13(1)<---------YAB1 --------->TOE2(3)                                                   <---------ATHB12  <---------ICU4 ---ZAT18            <-------TEIL          --------->TOE2(3)        <---------ARR11(3)<---------YAB1 -->ZAT18    <---------ANAC46              --------->TOE1(3)  --------->ANAC58        --------->ICU4 -->ZAT14    ----------->GT1               --------->YAB1     --------->ANAC58      --------->YAB1 <- ---ZAT14<---------GLK1(2)              <---------CCA1(2)   ---------->DOF2      <----------DOF2   --   caacgttcattgattctgtgaaattcatctctaaaaaacttcttatcttaaaaacttctctgcaaagcaaaatcattcacaaactttcattattattagt  1861000                                   <-------TEIL                         ----------->GT1     <---------ARR11(3)        ----------->GT1              --------->DAG2     --------->ARR11(3)      ---------->DOF2               ---------->DOF2                      ----- ---------->DOF2           --------->YAB1               <---------------AGL15                   <---- -YAB1                   ------->TEIL                   --------------->AGL15             ------->TEIL --------HSFB2a(2)    <---------YAB1<---------ANAC55(2)----------------->AGL2        --------->YAB1 ------->HSFB2a(2)  --------->CCA1(2)                  ----------------->AGL3       <---------ATHB12   tccaaaagatttagtcaaaacgatatgaatcaaaagttacataaactacaagttgataccaaaaagaggtagaagagtgatactcactcatgaacccaca  1861100                                                                                                 ----                                                                                                <----                                                                                                -----                                                                                               <-----                               <------------CBF           <---------ARR14(2)                   ------                          <------------CBF                --------->ARR14(2)                   ------       <----------DOF2   <---------ICU4                   <---------ARR11(3)                   ------       <---------DAG2 --------->YAB1                      --------->GLK1(2)                    <----- -->MYC3             --------->AHL20(2)                   --------->ARR11(3)                   <----- ---MYC3         --------->AHL20(2)           ---------->DOF2 ------------>CBF     ------------>CBF   tgttccatactttacccaaaaaaataaaaattgcattgtaagtcaaaacaaagaaaacaaaatctgcaatgttatggctaagaagaacaatgagcaagat  1861200                                                    xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                           --------->ANAC58      <---------ICU4                       --------->ANAC58   --------->YAB1                          --------->ANAC46 -->ZmHOX2a(2)                           <---------ALFIN1 --ZmHOX2a(2)             ----------->RAV1(1)      xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ---->CCA1(2)             --------->MYB52(1)       xxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ----ARR11(3)      --------->YAB1      <---------ALFIN1 --->AGP1         <<<<<<<<<ARR2        ----------->RAV1(1)             --------->TOE2(3) --->ARR11(3)     <---------ATHB12  --------->PCF2xxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --->ARR14(2) ------------>CBF      --------->ANAC46xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ----AGP1--------->AHL20(2)       <---------WRKY18(1)xxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ----ARR14(2)--------->ANAC46     <-----------GT1 xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   ctaaatcaaaattatacacaatcaaaaacaacagtttgaccccacacacaaaaaaaaaaaaaaaaaaaaaaaacattaatcttctaatctcttatacaat  1861300                                   --------->MYB52(1)                           --------------->AtSPL8                         ------>ZmHOX2a(2)                        <---------YAB1                       --------->ARR11(3)                       <---------ARR11(3)             ------>MYB46(1)                      --------->YAB1                  ------>MYB83                    <---------TOE2(3)      ----------->GT1<---------YAB1          >>>>>>>>>TBF1             ---------->DOF2     <---------MYB59 --------->MYB52(1)            XXXXXXXXXXXXXXXXXXXXX>MIR447A/B   gcagacaaatgcaaacaaagttaatgatctttgtacataactgtattgaaaaaaccgaacatgataaactacatttgtcttgaagaagaaatgttttttt  1861400  Previous    Next  AGI:  At2g05160.1    Description:  zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT3G52980.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41199.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 1858540    to: 1860928    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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