Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                    <                                                                                                    -                                                                                                   --                                     ========================================bZIP_DOF              --                                     ---------->DOF2                                               --                               <------NtERF2                                                      ---                              <---------ATERF1(1)                                                <---                              ------>NtERF2                               ---------->DOF2        <---                             --------->RAP2.6(2)                     <------NtERF2          ---------                             --------->RAP2.3(2)                     --------->ALFIN1      ----------                             --------->RRTF1(3)                    <---------ANAC58   <------NtERF2--                             --------->RAP2.3(3)                   <---------ANAC58  ------>NtERF2---                             --------->ANAC46                      <---------ANAC46  --------->RAP2.6(2)                             --------->DEAR3(1)                    <---------O2     <---------ATERF1(2)                             --------->DREB2C(2)                   --------->ALFIN1 <---------DEAR3(1)        --------->ARR14(2)   --------->ATERF1(2)                   <---------TGA1a  --------->ATERF1(2)        <---------ARR14(2)   --------->RRTF1(2)           <---------HSFC1(1)       <---------LBD16---       <------ZmHOX2a(1)     <---------ATERF1(2)          <---------HSFB2a(2)     <---------ATERF1(1)     <---------TOE1(2)      --------->RAP2.3(1)           --------->HSFC1(1)      <---------RAP2.3(1)     <---------TOE2(2)      --------->ORA47(2)  --------->ANAC58   ==================bZIP_DOF -------  --------->ANAC46          --------->ERF1  --------->YAB1--------->HSFB2a(2)    <---------DEAR3(1)-- ------>ZmHOX2a(1)         <---------ATERF1(1)  --------->ANAC58   ==================================   atcctcgcaggattcgatttggaagtaatcgccgccatcaaaagtatcgtaagcaagtttctcgaagaggcgtgggtaaagcttcggcggcaaacctgaa  29147800    ---------->DOF2 <------NtERF2 ----->NtERF2 ---------RAP2.6(3) -------->LBD16 ------->RAP2.3(3)                                                                            <------ ------->RAP2.3(2)                                                                        --------->ARR14(2) ------->DEAR3(1)                                                                         <---------ARR14(2) ------>ERF1                                                                            <----------DOF2 ------At4g35610                                                                       <---------ANAC46 ------ATERF1(1)                                                                       <---------ANAC58 >TOE1(3)                                                                              <---------ANAC58 ->RAV1(2)                             --------->ARR11(3)                             <-------TEIL<-- ------->ANAC46                  <---------YAB1                                    --------->ZAT2---- ------>ATERF1(1)              --------->YAB1                                      <---------At4g35610 ------>RAP2.3(1)             <---------ATHB12                                     <---------ZAT2---- --->DOF2           <----------DOF2---------->DOF2                           --------->At4g35610----- ------->RAP2.6(2)------->TEIL--------->ICU4                                 <---------At4g35610----- ==============bZIP_DOF <---------TOE2(3)                        ----------->HVH21 --------->At4g35610   gccgccaaaagtattccatgtactttgacgaaatcatcaaagctctcgattttgctcattgttctctctgaggggttttagcttaagctgcgttttcggc  29147900                                                                                                <xxxx                                                                                               <xxxxx                                                                                          --------->LBD16                                                                                          <xxxxxxxxxx                                                                                          <xxxxxxxxxx                                                                                         <---------LBD16                                                                                        <---------LBD16                                                                                        <xxxxxxxxxxxx                                                                                       <xxxxxxxxxxxxx                                                                                       ==============                                                                                       --------->MYB52(1)     >>>>>>>>>TBF1                                                           --------->DAG2 <xxxxxxxx     *TSS                                                                   ---------->DOF2<xxxxxxxxx ---RAP2.3(1)                    ----------->GT1                            ========================= ----NtERF2                <---------AHL20(2)                       --------->ANAC58   -------->P -->NtERF2                 <---------YAB1           --------->ICU4  --------->ANAC58   ------>MYB83 < ------->RAV1(1)      <---------ZAT6          --------->DAG2<---------AHL20(2)         ------>MYB46(1) ------>HVH21   --------->ALFIN1 <---------ZAT6----------->GT1  ----------->GT1       ------>ZmHOX2a(1) ---->ETT(2)  <---------O2--------->AHL20(2) ---------->DOF2--------->AHL20(2)      <xxxxxxxxxxxxxxxxsmallRNA(s)   gacagaagaagaagagaagtgggagtgatataatagggttaattttgaaaagtaataactaaaaaaatgtaagaaacaaaaagaggtcctaccgggagtc  29148000                                                                  <---------ANAC46                                                     --------->TOE1(1)                                        <xxxxxxxxxxxxxxxsmallRNA(si3)                                        --------->REM1(1)         <------MYB46(1)                                        --------->ANAC46          --------->At4g35610                                        <xxxxxxxxxxxxxxxsmallRNA(fl3)                                       <xxxxxxxxxxxxxxxxsmallRNA(se3)                                       <xxxxxxxxxxxxxxxxsmallRNA(i)                                       <xxxxxxxxxxxxxxxxsmallRNA(s)                                       <---------ZAT14            <---------ANAC55(2)                                       --------->ZAT14 *TSS       <------MYB83                                      <xxxxxxxxxxxxxxxxxsmallRNA(le3)                                      <xxxxxxxxxxxxxxxxxsmallRNA(se3)                                      <xxxxxxxxxxxxxxxxxsmallRNA(fl3)                                      <xxxxxxxxxxxxxxxxxsmallRNA(si3)                                     <xxxxxxxxxxxxxxxxxxsmallRNA(le3)                                     <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                     --------->ANAC46--------->TOE2(1)                                     <xxxxxxxxxxxxxxxxxxsmallRNA(si3)            <xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxsmallRNA(le3)           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->TOE1(2)          <---------TOE1(2)        <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        --------->At4g35610        <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <---------DEAR3(1)          <xxxxxxxxxxxxxxxxxxxxsmallRNA(l2)     <-----------HVH21             <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <---------ZAT2                <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    ========================bZIP_DOF<xxxxxxxxxxxxxxxxxxxsmallRNA(se3)    --------->ZAT2                <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <---------O2                  --------->MYB46(3)<---------LBD16    --------->O2                  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <xxxxxxxxxxxxxxxxsmallRNA(s) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    --------->TGA1a              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    ======================================MYC_MYB  --------->TOE2(2)  <-----------RAV1(2)            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxsmallRNA(s)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)----------->HVH21 <xxxxxxxxxxxxxxxxsmallRNA(s)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxsmallRNA(i)     <xxxxxxxxxxxxxxxxsmallRNA(s)        --------->MYB59 xxxxxxxxxxxxxxxxxsmallRNA(l2) <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ---------->DOF2 xxxxxxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->MYB111(2)      --------->YAB1 xxxxxxsmallRNA(s)        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->MYB46(2)       --------->ANAC46 xxxxsmallRNA(s) <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         --------->MYB52(2)       --------->ANAC55(2) xxxsmallRNA(s)  ---------->DOF2 -------->P     <---------GLK1(2)--------->MYB111(1)     <-------TEIL =============MYC_MYB    <xxxxxxxxxxxxxxxxxxxsmallRNA(l2)       <---------MYB55(1)  --------->AHL20(2) xxxxxxxxsmallRNA(s)     <xxxxxxxxxxxxxxxxxsmallRNA(si3)   <---------ANAC58         <---------AHL20(2) xxxxxxxsmallRNA(s)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)<---------ANAC58   --------->TOE2(3) =============bZIP_DOF <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <---------ANAC46   --------->YAB1 -------- xxxxxxxxxxxxxxxxsmallRNA(s)<xxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------MYB52(1) <-----------TBP----   gaacccaggtcgctggattcaaagtccagagtgctaaccactacaccatagaacctcggatgcttgttaggtgaaagctatcttatttatatacataata  29148100                                                                               <---------ARR11(3)                                                                               --------->ARR11(3)               ----------->GT1                                --------->At4g35610           <-------- <---------ANAC58                                             <---------At4g35610   <---------WRKY18(1) --------->ANAC55(2)              ----------->GT1        ----------->HVH21    --------->GLK1(1) <---------ANAC58         ----------->GT1                ------>ZmHOX2a(1)    <---------GLK1(1) ->AHL20(2) ---------->DOF2    ---------->DOF2         <---------ICU4         <---------CCA1(2)  <--- ----->CCA1(2)------------------------>ANAC81   <----------DOF2          <---------At4g35610------>ZmHOX2a(1)   tatgcgtattagaaaaaaggaaacaaaatagaaaaaaggaaactttgtaacttttaatcctgaccgctgaaattttgctgatatcttgaccgtcctttga  29148200                                                                          --------->GLK1(2)                                                                <---------ICU4                                                                -------->HAHB4                                                                <---------AHL20(2)                                                               <---------ATHB51                                                               --------->ICU4                                                               <---------ATHB12                                                               <---------YAB1                                                          --------->TOE1(3)                 <---------ATHB51                  <---------HSFB2a(2)   <---------GLK1(2)                 <---------AHL20(2)             --------->ARR11(3)     <---------TOE2(3) --DOF2      ----------->TBP                    <---------ARR11(3)<---------YAB1 ---------CBF--------->AHL20(2)    ------>ZmHOX2a(1)      --------->TOE2(3)  <---------YAB1   attgatagctcgtctataaataatgctcttgctcttcctctctatgctaaaatctcgaaaccctaattattctaagattctaatttgtgaagtttgtgag  29148300                                                                              <---------ANAC46                                                                           --------->ALFIN1        <-                                                                         <---------ANAC58         <--                                                                         <---------ANAC46 -----------                                          <-------GAMYB                  <---------ANAC58--------->MYB46(3)                                         --------->MYB111(2)          <---------CCA1(2)----------->RAV1(1)                                         <---------MYB46(3)         --------->YAB1---------->DOF2<---                                        <--------P<---------YAB1   <---------ATHB12 --------->ANAC58         ----------->GT1             <---------TOE2(3)           --------->WOX13(1) --------->ANAC58   gttttagggatgggttacaatttctacatgagagtgtatgaggttgttgatgatgcttcaacggatgcaatcatatcgtggagcgaaagcaacaacagtt  29148400                                                                                      --------->TOE2(2)                                                                                      --------->TOE2(3)                                                                                     --------->MYB46(3)                                 --------->GLK1(2)                                   <---------HSFC1(2)     <---------HSFB2a(2)        <---------GLK1(2)                                    --------->HSFC1(2)     --------->HSFB2a(2)        <---------ARR14(2)                                   <---------HSFB2a(1)    <---------LBD16      --------->HSFB2a(2)                                        ------>MYB83 --------------AGL15     <---------HSFB2a(2)                                        ------>MYB46(1) ---------------AGL3   <-----------GT1                              ----------->HVH21--------->HSFB2a(1) >RAV1(1) <---------HSFB2a(1)   --------->ARR14(2)       --------->ZAT18            -------->P ----TEIL <-----------RAV1(1)  <------ZmHOX2a(1)         <---------ZAT18       <-----------GT1   tcattatctggaatgttggagagttttacagaaggattctgcctaaatatgtagacttgggcacaaacctctcacggtttttctccaaccttcgttctca  29148500                     --------->ARR11(3)                     --------->ARR14(2)                                                             -                     <---------ARR14(2)                 <---------YAB1                             <-             ---------->DOF2                         <---------AHL20(2)                 <-------GAMYB         ----------->GT1                          <---------ARR11(3)                   <---------MYB46(3)  <-------TEIL <---------TOE2(3)                  --------->ARR11(3)    <---------At4g35610 <--------   tgggttcaaaatagttaaaggaagaactggagtattggaatttggacatgaagattttatcagagataaactggagcttatgaagaagatggttagcgat  29148600               <---------ZAT2               <---------At4g35610               --------->At4g35610            ---------->DOF2         --------->ANAC58         --------->ANAC58             --------->ANAC58     --------->ANAC58               ---------->DOF2     --------->ANAC58            --------->ANAC58    --------->DAG2               --------->ANAC58                                            <-------   ---------->DOF2           --------->ANAC58                                                -------- -------->ANAC46             --------->ANAC58                                 <---------ARR14(2) --------TOE2(3)           ---------->DOF2  <---------ZAT6           <---------ALFIN1------>ZmHOX2a(2) -------------WRI1--------->At4g35610 --------->ANAC58             ----------->RAV1(1)      ---------   aaacgtaaagcaaggaaagctgctaaatccaaagcaaggaaagctagagttcaagtcgagtttctcttccaacacttgcaaatttgatcgtccattaaat  29148700  Previous    Next  AGI:  At1g77550.1    Description:  protein binding / tubulin-tyrosine ligase. similar to unnamed protein product [Vitis vinifera] (GB:CAO65248.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN82450.1); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAO13468.1); contains InterPro domain Tubulin-tyrosine ligase; (InterPro:IPR004344); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) Range:  from: 29143193    to: 29147905    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g77560.1    Description:  pre-tRNA. tRNA-Gln (anticodon: TTG) Range:  from: 29147984    to: 29148055    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g77570.1    Description:  DNA binding / transcription factor. similar to AT-HSFA5 (Arabidopsis thaliana heat shock transcription factor A5), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G13980.1); similar to Os03g0854500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051938.1); similar to heat shock transcription factor 1 [Medicago sativa] (GB:ABJ09073.1); similar to heat shock transcription factor 1 variant c [Medicago sativa] (GB:ABJ09074.1); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain Heat shock factor (HSF)-type, DNA-binding; (InterPro:IPR000232) Range:  from: 29148244    to: 29148897    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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