Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                         <---------ANAC58                                                                       <---------ANAC55(2)                                                                       <---------ANAC55(1)                                                                       <---------ANAC58                                                                       --------->ANAC55(2)                                                                  <---------ICU4                                                                  <--------ATHB1                                                                  <--------HAHB4                                                                  --------->YAB1--------->HSFC1(2)                                                                  <------------ATHB5                             --------->REM1(1)                    --------->ATHB51                <--                            ------>MYB46(1)                      --------->ICU4 <---------HSFC1(2)---                            ------>MYB83                         <---------ATHB51                <---     --------->GLK1(1)      -------->P             <------ZmHOX2a(1) <-----------GT1             <--- ----ANAC46               --------->TOE1(2)--------->At4g35610   --------->AHL20(2)            ------ --ANAC46         <-----------GT1------->GAMYB ---------->DOF2   <---------ATHB12          --------->ZAT6   gatgaagaaatctacagttttccccatacctacaactgcaaaaacagcacaaaggacgatgagtccaataattacgtctctaagcttctactatcactaa  28275200          --------->ANAC58          --------->ARR14(2)        --------->LBD16             <---------ARR14(2) -------ICU4         ------->GAMYB <------NtERF2         ---------->DOF2 ------>YAB1       -------->P     --------->LBD16       --------->YAB1                 <---------GLK1(1) ------YAB1     <---------ATHB12 <---------ANAC46    --------->WOX13(1)       <-------TEIL  --------- ------ATHB12  <-----------ARR10<---------LBD16   --------->GLK1(2)       <---------YAB1    <-------- --->YAB1 --------->ANAC58<---------YAB1         <---------GLK1(2) <-----------GT1  <---------TOE2(3)   tcataacttccgaagcaaatcaaccctcattaatggcggaaacgaagattagaatctatcaaagtcaataaactgtatgattcatttagatttcagctca  28275300                                                                              --------->TOE2(3)                                                                              <---------MYB59                                                                        --------->ANAC58                                                                        --------->ANAC46                                                       --------->ANAC46 <---------ANAC55(2)                                         --------->ATHB12  --------->LBD16    --------->TOE1(3)                          --------->AtMYB61        --------->AHL20(2)   --------->ANAC58<---------At4g35610 >At4g35610            <---------ALFIN1<---------WOX13(1)<---------LBD16--------->ANAC55(2) -At4g35610         <-----------GT1  --------->ATHB12<-----------GT1    --------->ANAC55(1)  --------   atagacatcgttttctaacacattaccaccttcgcacatcgattgatttcaaattaaaccccagaatatagaacacgaaacctaaacttcagcaatcgaa  28275400                                                                                                   --                                                                                                   --                                                                                                 <---                                                                                               ------                                                                                ---------->DOF2------                                                                             <---------YAB1   -------                                                                        --------->YAB1      ---------                                                                       <---------YAB1       <--------                                                                       --------->ICU4       <--------                                   --------->YAB1     --------->At4g35610 --------->ICU4    <-------- ->YAB1               <----------ID1              <<<<<<<ZML2>>>>>>>>>TBF1<---------YAB1  <----------   acaaacttcaaaaactcttataaaacaacaaattgaatcaaaacaaaaactagaacagatgaagaagaagatgatgatgatgaaaagagtatttacctgc  28275500                                                                          --------->AHL20(2)                                                                          <---------AHL20(2) ------->ANAC58                                                        --------->ARR14(2) ------->ANAC58                                ----------------------->TaNAC69(2) ------ALFIN1                                 --------->TOE1(3)     <---------ANAC58 >MYB46(1)                                    --------->TOE2(2)     <---------ANAC46 >MYB83                                       --------->TOE1(2)     <---------ANAC58 -->ANAC46                            --------->At4g35610      ------->TEIL <---------AHL20(2) -->RAV1(2)                           <---------ZAT2        --------->ANAC55(2) -ANAC58                   ------>ZmHOX2a(1) <---------HSFB2a(1)   <-------TEIL                   <-- -ANAC58     <---------ZAT14          <---------At4g35610  ------->TEIL<---------ARR14(2)         --- -At4g35610  <---------REM1(2)        --------->ZAT2   <---------------AtSPL3             <---------ANAC58 -GT1        --------->ZAT14      --------->ANAC46    <XXXXXXXXXXXXXXXXXXXXMIR416         <---------ANAC58   cacgctgaaagtttctacacagttccttcctcatactcgcagctaaaaccttcgaactgtgtacgtatgtgcgtatatatatatgtagttttgcttctct  28275600                                                                                       --------->ARR14(2)                                                                                       <---------ARR11(3)                                                                                       <---------ARR11(1)                                                                                       <---------ARR14(2)                                                                                       --------->ARR11(3)                        <---------TOE2(3)                                             <---------CCA1(2)         *TSS   <---------MYB52(1)                                           <-----------GT1 -------HSFB2a(2)    <---------WOX13(1)        ---------->DOF2              <-----------GT1  -------- ------>HSFB2a(2)   <------------CBF     ------->GAMYB              <-----------GT1 --------->ANAC55(2)   cgagaaaaatgaagaagcgttagattgacgaagagtgtatcaacagaacaaaaggaagtctctatgtaaattaccatattacccttacatatcttcaaag  28275700             --------->ANAC55(2)             --------->ANAC58                                        <---------MYB52(1)             --------->ANAC55(1)                             <---------MYB52(1)             --------->ANAC58                              <---------ICU4             --------->ANAC46                              --------->YAB1    ----------->GT1                    ------>ZmHOX2a(1)  <---------ATHB12                 ----------   <---------TOE2(3)        --------->ANAC46        --------->WOX13(1)                 <------ZmHOX2a(1)   <---------TOE1(3)------------>CBF   <---------YAB1 <---------ATHB12                ----------->GT1 -->DOF2    <---------TOE2(3)   *TSS  --------->TOE2(3) --------->WOX13(1)       --------->YAB1   tatttagggttataaacgtaactccaatacacttcatcatcctcattctcttatccatcaatcgttacttcgtttcttctctatcaccaggaaaaaagaa  28275800                                    --------->LBD16                                   <---------HSFB2a(2)                             ----------------------->TaNAC69(2)                           <---------ARR14(2)                         <---------DEAR3(2)                         <---------MYB46(3)                        <---------DEAR3(1)                                                      -----                        <---------RAP2.6(2)                                                  --------                      ------------>AtMYB77                                             --------->DAG2                   <---------ICU4  --------->HSFB2a(2)                               ---------->DOF2         ------>ZmHOX2a(1) --------->ARR14(2)                  <-------MYC3        <---------TOE2(3)    <---------At4g35610 <---------ANAC46             <---------GLK1(2)             <---------YAB1 >DOF2 ----------->RAV1(2)<-------GAMYB     <---------CCA1(2)  ------->MYC3     --------->ICU4  -----   gaagatagctcctgaagacaaaaatggcggtttctctcccgaactcgtttcttcagattagcccatgtgttccttctctgcaattaagaaaggtaagctc  28275900                                                                                               ------                                                                                           <------NtERF2                                                                                           --------->ATERF1(1)                                                                                          <---------RAP2.3(1)                                                                                          ------>NtERF2                                                                                          <---------ERF1                                                                                         --------->ATERF1(2)                                                                                         <---------RAP2.3(2)                                                                                         <---------RAP2.6(2)                                                                                         <---------DEAR3(1)                                                                                         <---------ANAC46                                                                                         <---------RAP2.3(3)                                                                                         <---------ATERF1(2)                                                                                        --------->RAP2.6(3)                                                                                  <-----------HVH21     <---------GLK1(1)               --------->LBD16                             --------->LBD16 ---- ---->ANAC58                     ------>ZmHOX2a(1)                              <---------DEAR3(1) ->At4g35610                  ------>ZmHOX2a(1)                                <---------LBD16------- ---->ANAC58              <-----------GT1                           <-----------GT1----------->HVH21   gaaatcgatttctcattcttcgtctatttctcctccttccccaaaatcactaaatttgtttgtgtttttttttcaaaattagccggtgatggcggcagtg  28276000                                                       <---------SPL7                                                      <---------ANAC46                                                      <---------ANAC58                                                 <---------ANAC58                                                 <---------ANAC55(1)                                                 <---------ANAC58                                                 <---------ANAC46                                                 --------->ANAC55(2)                                                 <---------bZIP60(2)                                                 <---------ANAC55(2)                                               --------->MYB52(1)                                               <---------DOF5.7(2)                                            --------->At4g35610                          --------->ANAC58                                      --------->MYB55(2)                                 --------->ANAC46           --------->MYB52(1)         <---------MYB46(3)                           --------->ANAC46    <------ZmHOX2a(1)                --------->ALFIN1 ----------->GT1        --------->GLK1(1) ----->HVH21                        <---------MYB52(1)<---------ANAC58    ------>ZmHOX2a(1)   <------ ------>DOF2                 xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)           --------->LBD16--------->ANAC58 -->At5g28300            --------->At4g35610<---------At4g35610          --------->TOE2(3)  ---------   aaaggaggaaaacaatcggtgagaagaagcagcaatacggtggttcagataacgtgtcgtaagaaggaattgcatcctgaattccacgaagacgcaaagg  28276100  Previous    Next  AGI:  At1g75340.1    Description:  zinc finger (CCCH-type) family protein. similar to nucleoporin family protein [Arabidopsis thaliana] (TAIR:AT1G59660.1); similar to EMB2766 (EMBRYO DEFECTIVE 2766), structural constituent of nuclear pore [Arabidopsis thaliana] (TAIR:AT2G45000.1); similar to hypothetical protein OsJ_021689 [Oryza sativa (japonica cultivar-group)] (GB:EAZ38206.1); similar to Os06g0704300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058507.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) Range:  from: 28272631    to: 28275609    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g75350.1    Description:  EMB2184 (EMBRYO DEFECTIVE 2184); structural constituent of ribosome. Identical to 50S ribosomal protein L31, chloroplast precursor (RPL31) [Arabidopsis Thaliana] (GB:Q9FWS4); similar to unnamed protein product [Vitis vinifera] (GB:CAO61124.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN64555.1); contains InterPro domain Ribosomal protein L31; (InterPro:IPR002150) Range:  from: 28275732    to: 28276493    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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