Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                          <---------ATHB12                                                                        --------->ICU4                                                                       --------->ANAC58                                                                       --------->ANAC58                                     --------->YAB1                 <---------ZAT18           ------->TEIL       --------->ZAT14                      --------->ANAC55(2)   --------->LBD16            <---------ZAT14                      --------->ANAC58          ------>MYB46(1) <-----------RAV1(2)  ------>ZmHOX2a(1)      --------->TOE1(3)     --------->ANAC58          ------>MYB83 ->DOF2<---------KAN4(2)    --------->ZAT6   --------->TOE2(3)  <---------MYB52(1)         --------->AtMYB61   acaccagggaatgaacttaaaatcctactcacagtactatcacaaaaccctaaactcttcaaaacccttacgcactcattaaacttatctggaccaatcc  27876500                                                            --------------->AGL15                                                            --------->ANAC46              ------>ZmHOX2a(1)                                                           ----------------->AGL1         ===========                                                           <---------LBD16               --------->TOE2(3)                                                          <---------At5g28300         --------->ARR14(2)                                                 ------>NtERF2                        <---------ARR14(2)                                                <---------ALFIN1              <---------HSFB2a(1)                   <------ZmHOX2a(1)         --------->ANAC58                 --------->HSFB2a(1)           --------->KAN4(1)                 --------->ANAC46                <---------GLK1(1)          <---------KAN4(2)                  ----------->HVH21             <------ZmHOX2a(1)        <      --------->HSFB2a(2)                    --------->ANAC58--------->LBD16 --------->GLK1(1)<------      <---------HSFB2a(2)          <---------At4g35610--------->REM1(2)    ==========================   caattctactagaatgttcaaggacgctcttaatcgcagaagatgagacgacaccgtgtttaccgcaattagacagaggaactctccatttcctcagaaa  27876600                                  ------->GAMYB                                 --------->ANAC46                                 --------->ANAC58                                    <---------HSFB2a(1)    ------>ZmHOX2a(2)          --------->MYB52(1)          <---------YAB1            --------->HSFB2a(1) ==========HOX2a_HOX2a     <---------GLK1(1)            --------->GLK1(1)            <---------HSFC1(2) ---------YAB1             --------->GLK1(1) --------->GLK1(1)          <------ZmHOX2a(1) ---GLK1(2)       <---------ZAT18--------->ANAC58      --------->ARR14(2)            --------->HSFC1(2) ==========HOX2a_HOX2a --------->YAB1        <---------GLK1(1)  --------->YAB1------>NtERF2   ctctgatcgcagaacattagggcaatcggaaatcaacgaaacgagtgatttctgagggattttcaatgacaataggatgccgagagaaatttcggtttct  27876700                                                                                       ----------->GT1                                                                                  <-------TEIL                                                                                 --------->GLK1(2)                                                                                 --------->CCA1(2)                                                                                --------->ARR11(1)                                                                                --------->ARR14(2)                                                                                <---------ARR14(2)                                                                                <---------GLK1(2)                           <---------ANAC46                                    <---------HSFB2a(1)                           <---------ANAC58                                    <---------GLK1(1)                           <---------ANAC58                                   ----------->ARR10                     <---------WOX13(1) --------->At4g35610                  <------ZmHOX2a(1)                <---------ANAC55(2)    --------->ALFIN1         --------->AtMYB61--------->ARR14(1)<-                --------->ANAC55(2)<------ZmHOX2a(1)   <------ZmHOX2a(1)----------->HVH21      <-----   actaagtccgaattcaataggtgattgtttcttgagaggaagtgctgaagagaagaaggagggaaaccatacctctgaaggagattcgcgagtaaaattc  27876800                                                     --------->GLK1(2)                                              <---------ZAT6                                          --------->ARR14(2)                                --------->GLK1(2)    <---------ARR14(2)               --------->ATHB12 --------->ARR14(2)   --------->ARR14(2)                         <----    --------->ZAT14      --------->ALFIN1 <---------ARR14(2)                        --------->LBD16    <---------ZAT14    <------MYB46(1)   <------ZmHOX2a(1)                         <---------ANAC46   ------>ZmHOX2a(1)   <------MYB83      ================HOX2a_HOX2a              <---------LBD16 <---------ANAC46  --------->ATHB12<---------ANAC58  ------->TEIL          <---------ANAC46     <---- --------ARR14(2)<---------WOX13(1)<---------ANAC58 <---------ARR14(1)    <---------MYB46(3) <------- --TEIL      <---------WOX13(1) <---------ARR14(2)------>ZmHOX2a(2)   --------->ATHB12   <---------WOX13(1)   gtttcctgtagtgagattgattgataggtgtgagaattcgtgaggatagtgatcgaatctggttgaatagggttattgggtagtcacggagattgatgaa  27876900                                                  --------->ZAT14                                                  <---------ZAT14                                                  <---------SPL7                                           --------->WOX13(1)                                         <---------ATHB12                                   --------->ANAC58                                   --------->ANAC58                            <---------ANAC46 <----                                   --------->ANAC46                            <---------O2  <-------                       <---------AHL20(2)------------>CBF                      --------->O2  <-------                      <---------AHL20(2)--------->ANAC58         ---------->DOF2  --------->REM1(2) < -----TOE2(3)      <---------AHL20(2)   --------->ANAC58  <------ZmHOX2a(1)    <---------bZIP60(2) <- -----TOE1(3)      --------->AHL20(2)<---------ZAT18--------->SPL7       ----------->TGA1    <------- --REM1(1)   ------>NtERF2 <---------AHL20(2)<---------ATHB12<------ZmHOX2a(1)<----------------------   ggttttgagttttgaggccatttttttatttagtttcaaggcactcaatcactgtacgaaggaggaagaaagacgatgacgacgtgtacaaaattaagat  27877000       ------->TEIL   --------------->AtSPL8                   ------>MYB46(1)   <---------------AtSPL8                   ------>MYB83                                 <---------TOE2(3) -----YAB1 ------------>CBF               <---------MYB55(2)                   <---------ANAC58 --YAB1<---------ZAT18                    --------->MYB46(3)                   <---------ANAC58 --TOE2(3)--------->ANAC46               --------->ANAC58                      <---------ANAC46 ---------AHL20(2)                       --------->ANAC58                     --------->ATHB12 --------YAB1                           ------>NtERF2                      <---------ANAC58       --- --TOE1(3)--------->TOE2(3)       ---------->DOF2                          <---------ANAC58 <-------- -TaNAC69(2)                   --------->LBD16                     <-----------GT1   <------------CBF   tattatttgtaccctcaatgtttcatcttattccgaaaatgccacccactatttgttttgtaagacatttaaccttgtcttgagtgggattgtggtttag  27877100                                                                               --------------->AGL15                                                                               <---------------AGL15                                                                              --------->TOE1(3)                                                                              <---------MYB59                                                                 --------->GLK1(2)           --------                                                                 <---------ARR14(2)     ---------->DOF2                                                          --------->LBD16     <-----------------AGL3      --------->ANAC58                               ---------->DOF2<----------DOF2 ---------->DOF2      --------->ANAC58                            ----------------->AGL1      ----------------->AGL3      --------->bZIP60(2)        ----------->GT1  =============================================MADS_MADS ------>CCA1(2)      ---------->DOF2              ----------------->AG        --------->TOE2(3) <---- -ANAC46          <---------TOE2(3)      <-----------GT1<---------LBD16       ----------------->AGL2   agatgggaacgtcatggtttaatgaaagttggaagttgtatatttacaatttccctaaaccggagggaatcttttgtttacctaaaaaaagaaagttgtt  27877200                             <---------ZAT18                          <------------CBF                                --------->YAB1                        <---------AHL20(1)                              *TSS                        --------->AHL20(1)                             --------->YAB1                        <---------AHL20(2)                           <---------YAB1              --------->REM1(1)         <---------ARR11(3)         <---------AtLEC2      <-----------GT1   --------->AHL20(2)                     <----------DOF2 --->GT1      --------->ANAC46      ---------->DOF2            <---------DAG2  --------->At4g35610 -------GT1 <-----------GT1  --------->ZAT18                <---------ALFIN1 --------->YAB1   acttcttgttacatttacatcactattttattgcacttaaaagacctgagtttttgaaacacacacttttcatgaataatcagaagaagttgatgctatt  27877300                                                                             <---------MYB46(3)                                                                             --------->MYB55(2)                                                                             --------->MYB52(2)                                                                            <---------DEAR3(1)                                                                           <---------MYB52(1)                                                                           <------NtERF2                                                                          <-----------HVH21                                                                          ------------>AtMYB77                                                                          ------>NtERF2                                                                         --------->DEAR3(1)         <                                                                        --------->ATERF1(1)        --                                                                        --------->RAP2.3(1)        --                                                                        <------NtERF2             <--                                                                       <---------ATERF1(1)       ----                 <------MYB83                                         <---------DEAR3(1)      -------                 ----------->GT1                                    <-----------HVH21         <------              <---------MYB52(1)                            <-----------HVH21<---------DEAR3(2)<-----          ------>NtERF2                                    =================RAV<--------P     -------         <-----------------AG                         <----------DOF2--------->ATERF1(1)      <------         --------->ANAC46                      <---------ANAC58  <---------TOE1(2)        --------->ANAC46         ============================================================================================         ----------------->AGL1                <---------ANAC58 <-----------RAV1(2)      <---------LBD16   <---------YAB1<------MYB46(1)              <-------TEIL <-----------RAV1(1)<-------GAMYB--------->LBD16   ctcttatttttgcgccatttggtaaaacatttgaaattagtttcgaaatgcatgcgattttctgtcgcagggtcgccgtcggttgctcttccccgcagct  27877400  Previous    Next  AGI:  At1g74120.1    Description:  mitochondrial transcription termination factor-related / mTERF-related. similar to PTAC15 (PLASTID TRANSCRIPTIONALLY ACTIVE15) [Arabidopsis thaliana] (TAIR:AT5G54180.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62450.1); contains InterPro domain Mitochodrial transcription termination factor-related (InterPro:IPR003690) Range:  from: 27874935    to: 27876921    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g74130.1    Description:  rhomboid family protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G74140.5); similar to unnamed protein product [Vitis vinifera] (GB:CAO62451.1); contains InterPro domain Peptidase S54, rhomboid; (InterPro:IPR002610) Range:  from: 27877272    to: 27879693    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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