Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                       --------->GATA12                                                                                     <---------GATA12                                                          ----------->GT1            --------->ARR14(2)                                                     <---------DEAR3(1)              <---------ARR11(2)                                                     ------>ZmHOX2a(2)               <---------ARR14(2)                                                   <---------ARR11(2)            <-----------------AGL1                                                   <---------ARR14(2)          <---------RAP2.6(2)                                                   <---------RVE1(2)         <-----------RAV1(1)                                                   --------->ARR11(2)    <---------AHL20(2) -------ANAC58                                     --------->GATA12   --------->YAB1<---------RAP2.6(3) -------ANAC58                                     --------->ARR14(2) --------->TOE2(3)        <----- -GT1          <---------ZAT18                     <---------GATA12 <---------ARR11(3)         <-----   gcttgaagagcaatttgttcacttgagttagaagttgaaaatgaattgttttggatcggtgagttaaaactatcttaaattgtggccgatttggcaatat  27494400                            --------->ARR11(3)                            <---------ARR11(3)                           --------->KAN1                           --------->GLK1(1)                          <---------RVE1(2)                    <---------GLK1(2)                    <---------RVE1(2)                  <---------YAB1               --------->GLK1(2)              <---------RVE1(2)              --------->ARR11(3)     <----------ID1     <-----------GT1            ----------->ARR10   ------>ZmHOX2a(1)    <---------ZAT6        ----------->GT1 <---------YAB1       <---------AHL25(3)             --------->ANAC55(2) ----ARR11(3) <---------GLK1(2) <----------DOF2<---------YAB1               <---------ANAC55(2)  <--- ----AHL20(1)--------->KAN1<---------GLK1(1) --------->YAB1 --------->ANAC46--------->YAB1  <--------   atgttgtaagtagtaagattctgattctgatatccttttaagacaaattatactagtattacaagactcaatcttcttacataatacaaaattcagttca  27494500                                                               <-----------GT1                                                        <---------HSFB2a(2)                                                        --------->HSFB2a(2)                                                  --------->RVE1(2)                                 --------->YAB1   --------->ARR11(3)                                 --------->AHL20(2)  <----------DOF2                               <---------AHL12(2) <---------AHL20(1)       >>>>>>>>>SARD1<------ZmHOX2a(1)            --------->AHL20(1)       --------->YAB5       >>>>>>>>>CBP60g  ----------->GT1           <---------ARR11(3)  --------->CCA1(2) ------YAB5      --------->DOF5.7(1)             --------->CCA1(1)   <---------ARR11(3) -At4g35610 ----------->GT1   --------->YAB1     --------->RVE1(1)   --------->ARR11(3)        <-----   tggttcgaaatttggagtaaaaaggattgaaataataaaaaaaacattcaaatatcttttggaaataacaagatatatgactctgttttcatgtatagat  27494600                        <---------MYB46(3)                        ----------->GT1                       <---------ANAC46            --------->ZAT14                     <---------MYB46(3)     --------->bZIP60(1)                    --------->ALFIN1        <---------bZIP60(1)                 <---------AtMYB61     ----------->GT1                      --------->DAG2           <----------DOF2            --------->DOF5.7(1)                   --------->DOF5.7(1)          <---------DOF5.7(1)         --------->DAG2                 ---------->DOF2      <---------YAB5<---------AtMYB61---------->DOF2             ---------->DOF2                    < ----GLK1(2)  --------->ATHB12       --------->DOF5.7(1)--------->ANAC46  ---------->DOF2   <--------   tgttgtgcatcatctttcattggtggtggataaaaaaaaaaaagtgacaacagtttacacgaagaccgaaagaaaggaaaggtagcaataggttgtgtaa  27494700                                                         --------->ANAC58                                                         --------->ANAC58                                                      ----------->HVH21                                                      ----------->TGA1                                                <---------ANAC46                                               <------NtERF2                                               --------->ATERF1(1)                                               <---------LBD16                                              <---------RAP2.3(1)                                              <---------RRTF1(1)                                              <---------ERF1                                              ------>NtERF2                                             <---------RAP2.3(2)                                             <---------RAP2.3(3)                                             <---------RRTF1(3)                   <---------ARR11(2)                                             <---------RAP2.6(2)                  <---------GLK1(2)                        --------->ANAC46     --------->ATERF1(2)                  --------->ARR11(2)                        --------->ANAC58     <---------RRTF1(2)                   --------->ARR14(2)                <---------ICU4               <---------DEAR3(1)            ------->GAMYB               <---------YAB5                <---------ATERF1(2)    --------->GATA12               <---------YAB1     <---------KAN1<---------DEAR3(1)  ------->TEIL  <---------ARR14(2)             --------->YAB1      <---------ARR14(2) <---------At4g35610   --------->MYB46(3)             <---------ICU4      --------->GLK1(2)<------NtERF2     --------->RVE1(2)               -       <---------At4g35610       --------->ARR14(2) --------->At4g35610 --------->MYB52(1)          - ---------AHL12(1)      --------->ANAC58  ----------->HVH21         <---------GATA12              --- -ANAC46    <---------YAB5      <---------GLK1(2)--------->LBD16   <---------CCA1(2)           ------   gaaaatttcatctcatcatcattttcaagacacagaatatggttttgacggcggagatgacgcaaacgtgaatctaacggaccgtattctctctgtaaca  27494800                                                                          <---------O2                                                                          --------->ANAC58                                                                          --------->ANAC58                                                                     --------->ZAT14                                                                     <---------ZAT14                                     --------->ARR14(2)       <---------ANAC58                                     <---------ARR14(2)       <---------DEAR3(1)                                     --------->RVE1(2)        <---------ANAC58          <---------ANAC58           <---------GATA12      --------->DOF5.7(1)     <----------DOF2                 --------->GATA12     --------->DOF5.7(1)         <---------ANAC58    <---------DOF5.7(1)          <<<<<<<<<<WRKY63       ---------->DOF2   --------->ANAC55(2) ----->MYB46(1)    --------->At4g35610               --------->WOX13(2)   --------->ANAC55(1) ----->MYB83       ----------->RAV1(2)               <---------WOX13(2)   --------->ANAC46=========== ------>AtMYB61    <---------At4g35610       *TSS    <---------TOE2(3) <---------REM1(2)  <----------DOF2 --->ZAT6 <---------ANAC58     ----------->GT1   <----------DOF2<------NtERF2         <---------ANAC58   ccaacgtcttttgcttatttcatctgtagcaaatagtcaaatctgaaaatgctttaatgaaagggcgtctctgtacacgtagccacttgcttctttcact  27494900                <---------YAB5             <------ZmHOX2a(1)        <-----------HVH21               <---------LBD16        <-----------TGA1         <---------YAB5       ================================bZIP_DOF       <---------TGA1a         --------->YAB1                                             --------->YAB1       --------->TGA1a      <----------DOF2                                              <---------YAB5       --------->O2     <---------At4g35610<---------MYB52(1)          <---------ZAT18  <-----------GT1   <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  ------>ZmHOX2a(1)          <---------LBD16      <-----------GT1 ================bZIP_DOF  <---------DOF5.7(1)                 --------->KAN1<---------WOX13(2)   ctctctctctcgtcaggaatcgtctctgctctttcatcatcctccggtctctctctccctctctctaattcggagcgctaatttctgttttatcatcttc  27495000                                                            ----------->GT1                                               ------>ZmHOX2a(2)                                               ====================================HOX2a_HOX2a                                              =====================================HOX2a_HOX2a      <                                              <------ZmHOX2a(2)                                    --                                             --------->GATA12                                     <--                                             <---------ARR11(3)                                  <---                                             --------->ARR14(2)                                  ----                                             <---------GATA12                                    ----                                             --------->ARR11(2)                                  <---                                             <---------ARR14(2)                                  <---                                             --------->ARR11(3)             =========================                                     --------->DAG2       --------->DOF5.7(1)                    ----                                 <---------AHL25(3)       --------->DAG2    ------>ZmHOX2a(1)    <---                                 --------->AHL20(2)      --------->DOF5.7(1)--------->LBD16      ----                        <------MYB46(1)      <---------ARR11(2)   <----------DOF2                ----                        <------MYB83---------->DOF2      ---------->DOF2    =========================                       --------->MYB59       <---------RVE1(2)    <---------DAG2             --------                <---------AtLEC2--------->AHL20(2)  --------->AtLEC2    <-----------GT1    <---------KAN1   ttgagggttcttctagttgcatagctaggtctaaataaaaaagtagggatcttgatgcaaaaaggaaacttttttttcctggtttccctaggcatgaaag  27495100    <------MYB83    <------MYB46(1)   <---------AtMYB61  <---------MYB52(1) -----------RAV1(1) ---->ZmHOX2a(2) ----ZmHOX2a(2) ------GATA12 ----->ARR11(3) ----->ARR14(2) ------ARR11(3) ------ARR14(2)                                                          --------->ANAC58 =====HOX2a_HOX2a                                                    <---------------------WRI1 ----->RVE1(2)              <---------WOX13(2)                <---------------AGL15         <-------- ------AGP1                 --------->WOX13(2)                --------------->AGL15       --------->DAG2 ----->GATA12           <----------DOF2                      ----------------->AGL1   --------->ANAC58 ----->AGP1         <---------ZAT18                 --------->ARR11(3)   --------->ANAC58---------->DOF2 ====HOX2a_HOX2a <-----------RAV1(1)           <-------TEIL<-----------GT1            --------->ANAC58 -->DOF2       <---------KAN1    <----------DOF2  <---------YAB1   <---------LBD16   <---------------   atctgttggtgtttagaatttgtgggcttcaattactttgacttctaggttgatgattttgttacattttgggggaagtaatctatgaacgaaaagcaca  27495200                                      --------->MYB59                                      <---------TOE1(3)                        <----------DOF2                        <---------DAG2<---------TOE2(3)     <---------CCA1(2)             ------>ZmHOX2a(1)    ------->TEIL      --------->DOF5.7(1)            <---------ANAC58    <-------TEIL        --------->DAG2 --ID1 --------->KAN1   <---------DOF5.7(1)        ---------->DOF2          --------->RVE1(2) ------WRI1 <---------ANAC58  --------->GATA12--------->AtLEC2             --------->GLK1(1)   aactgctatgtattccttacgaagcgcttttagatgcatttaggttttatgcaaaaagtcccataacttgttgtctgatatcaaagttttcattttggga  27495300  Previous    Next  AGI:  At1g73090.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO23197.1) Range:  from: 27491878    to: 27494427    Orientation: Forward Links:  TAIR  MIPS  AIP    AGI:  At1g73100.1    Description:  SUVH3 (SU(VAR)3-9 HOMOLOG 3). Identical to Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3 (SUVH3) [Arabidopsis Thaliana] (GB:Q9C5P4;GB:Q9SSL7); similar to SUVH1 (SU(VAR)3-9 HOMOLOG 1) [Arabidopsis thaliana] (TAIR:AT5G04940.1); similar to SUVH1 (SU(VAR)3-9 HOMOLOG 1) [Arabidopsis thaliana] (TAIR:AT5G04940.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO46198.1); contains InterPro domain Pre-SET zinc-binding region; (InterPro:IPR007728); contains InterPro domain SRA-YDG (InterPro:IPR003105); contains InterPro domain Post-SET zinc-binding region; (InterPro:IPR003616); contains InterPro domain Pre-SET zinc-binding Range:  from: 27494845    to: 27497843    Orientation: Forward Links:  TAIR  MIPS  AIP      Please cite the corresponding publications when using AthaMap.
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