Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                --------->ANAC58                                                                  <----              --------->ANAC58                                                                  <----    ---------->DOF2      ---------->DOF2                                            ------->GAMYB <----------DOF2--------->ANAC46                                               <-------TEIL<---------At4g35610 ->DOF2       --------->ANAC46                                  --------->TOE1(2)----------->RAV1(1)   agcctttaaagagaacacacaaaactaaaaagaaatggattttgggcttacatcgatttcagtgaaactgggaagaacaggttcaacagagagagcagct  26866700                                                                                                 ----                                                                                                -----                                                                                      <---------ZAT14                                  --------->ZAT6<------NtERF2   --------->ANAC58      --------->ZAT14                          --------->MYB46(3)  <---------RAP2.6(2)                     <---------ZAT18                         <---------KAN4(2)   --------->RAP2.6(3)--------->ANAC58      <-------TEIL --                     <-------TEIL --------->AtMYB61             --------->AtLEC2   --------->ANAC58--  <----------DOF2   --------->ALFIN1         <---------LBD16   --------->WOX13(1)  --------->ANAC58-- -----DAG2       <---------------AtSPL8   <----------DOF2    <---------ATHB12     <---------------AtSPL8 ------DOF2      --------->DAG2  --------->MYB46(3)<---------At4g35610--------->YAB1  --------->ZAT18   tttcctttgaagatagaataaggtgcgaacaatcgaccactaggctttgcggcatcttctcaaatcaagcaaacaaaattagggcaagtacacttaaact  26866800                                                                                              -------                                            ------->PIF5                                      <------          <---------MYB52(2)          <---------ARR14(2)                                      -------     ----------->GT1                  --------->ARR14(2)                          <---------ANAC55(2)    --------->ANAC58              --------->LBD16    <--------P                   --------->ANAC58    --------->ANAC58             <---------LBD16   <---------MYB46(3)             --------->ANAC55(1)  --------->MYB52(1)            <---------LBD16<-----------RAV1(2)                --------->ANAC58 ----->MYB52(1)            <----------DOF2  <-------PIF5             --------->ZAT2           <------ ------>TGA1              --------->TOE2(3) <-----------HVH21        --------->At4g35610      <------ ------->ANAC58           --------->TOE1(3)--------->ANAC46          <---------ZAT2           ------- ------->ANAC58    <---------ARR11(3)<---------GLK1(1)          <-----------GT1   --------->AtLEC2 -- ------->ANAC46    --------->ARR11(3)--------->GLK1(1)      --------->GLK1(2)     --------->ANAC46 <-   gacgaaacggaaacaaaccaagttcttacctttaccagggaatccacgtccaggggttgaagaatttgaccagcttgcaaaaccacgcaacgtcgaagct  26866900   ----------->GT1  --------->DAG2                                             --------->ANAC58 ---------->DOF2                                             --------->ANAC58 -->HSFC1(2)                                               ---------->DOF2 ---HSFC1(2)                                            --------->LBD16 -->ZAT2                                              ------->GAMYB ---ZAT2                                            -------->P ---HSFB2a(1)                     <----------DOF2   ------>MYB46(1) -->HSFB2a(1)<----------DOF2   ------>ZmHOX2a(1)    ------>MYB83 ------->HSFB2a(2)           <---------At4g35610  --------->AtMYB61 --------HSFB2a(2)    ---------->DOF2            --------->MYB46(3)                      --------->GLK1(2)   tcgaaaagtgacttactttggtcacaaaggctcctgctttaacaaaaacaaaccaacccagagaagccattttaagagtaatgaaatctaaaatctgaat  26867000                                         <---------ANAC58                                         <---------ANAC58                                     <---------ANAC58                  <---------LBD16  ------>NtERF2                 ----------->RAV1(2) <---------ANAC58                               <---------ARR11(3)      <---------ARR14(2)          <---------ZAT18                             <---------ANAC55(2)  <-      --------->ARR14(2)          --------->ZAT18                    ---------->DOF2*TSS           <-     <------ZmHOX2a(1)     ---------->DOF2  --------->REM1(1)   ----------->GT1     --------->ARR11(3)   tttgagaggaactgaagtaacctggagagcaaagagcgggcttgcttcatcatcttcttctgtctcgagtaaaaagcatcacttgaggtcttccgacttc  26867100                                                                                  ------------>CBF                                   ------>NtERF2                                 >>>>>>>>>>>>>>>>>LFY                                   <---------ATERF1(1)                           <<<<<<<<<<<<<<<<<LFY               --------->YAB1     <---------ETT(2)     --------->MYB52(2)      ------->GAMYB        --------->ATHB12          ----------->HVH21  <---------MYB52(1)       --------->MYB46(3)    <       <---------YAB1         <---------LBD16  <-----------GT1<-----------TBP<---------At5g28300<---- --------TOE1(3)         <----------DOF2     <---------AHL20(2)             --------->MYB52(1) <----- --------TOE2(3)  --------->MYB52(1)     <---------CCA1(2)  <-----------TBP <-----------GT1 <--------   tgaggttttatgatttatcaaaacgggttttatcgggcgacccatattttaacccgtttgttttatatataagtcttttaacggcccaatgggcctttat  26867200                                                                                       >>>>>>>>>TBF1                                                                                    >>>>>>>>>TBF1  >>                                                                                 >>>>>>>>>TBF1  >>>>>                                                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     ----------->GT1                                --------->ALFIN1    >>>>>>>>>TBF1 xxxxxxxxxxxxxxx   <---------WOX13(1)                            --------->DAG2        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <------------CBF                               *TSS   <---------At4g35610   >>>>>>>>>TBF1  >>>>>>>> --------->ATHB12                              ---------->DOF2      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------MYB46(3)                     <---------ARR14(2)        >>>>>>>>>TBF1 xxxxxxxxxxxxxxxxxxxxx ---------YAB1                          --------->GLK1(2)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) -----YAB1                              --------->ARR14(2)     >>>>>>>>>TBF1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) -------CBF --------->AHL20(2)          ------->TEIL<---------REM1(1)>>>>>>>>>TBF1 xxxxxxxxxxxxxxxxxx --DOF2     <---------AHL20(2)     --------->MYB52(1)   --------->At4g35610>>>>>>>>>TBF1  >>>>>>>>>TBF1   tgttgattgggaaattaaaaatcagattagagaagacgaacgaatctgagaaaggtgaagctgaagaagaagaagaagaagaagaagaagaagaagaaga  26867300                                                 <---------ANAC58  ------>ZmHOX2a(2)                                                 <---------ANAC58  ==============================HOX2a_HOX2a                                           <---------YAB1         <------ZmHOX2a(2)                   ------>NtERF2        --------->GLK1(2)         ===============================HOX2a_HOX2a                   <------NtERF2       --------->ARR14(2)        --------->ARR11(3)                  <---------ZAT18      <---------GLK1(2)         --------->ARR14(2)                  <---------SPL7       <---------ARR14(2)        <---------AGP1                     - >>>>>>>TBF1     <---------ANAC58     ===================================HOX2a_HOX2a               -- >>>>TBF1        <---------ANAC46     ====================================HOX2a_HOX2a              <- xxxxxxxx>smallRNA(se3)               <------ZmHOX2a(1)          <---------ARR14(2)                -- >TBF1          <---------LBD16    <---------HSFB2a(2)           <---------ARR14(3)           ------- xx>smallRNA(se3)<---------ANAC58  --------->HSFB2a(2)           <---------ARR11(3)           <------ xxxxx>smallRNA(se3)              <---------ANAC46               --------->ARR14(3)       <------ZmHOX2a(1)   agaagaagactctctaatggcggactcaaactgatttcgaggattctgatttcgttttctagttgaagatctttcaactcttaatctcattaggaagatg  26867400                                                                       <----------DOF2                                                                       ------>ZmHOX2a(1)                                                                       ===============HOX2a_HOX2a                                                                      --------->TOE2(3)                                                                     ------>ZmHOX2a(2)                                                                    <------ZmHOX2a(2)                                                              --------->YAB1                                                              <---------ICU4           ----------->HVH21                    ------>ZmHOX2a(2)  ------->TEIL           --------->WRKY12                     ==============================HOX2a_HOX2a ---------->RAV1(1)                           <---------ARR11(3)   --------->ARR14(2) ------->ANAC46                               --------->ARR11(3)   <---------ARR14(2) --------ETT(1)                           --------->YAB1--------->TOE2(3)      ------>ZmHOX2a(2) --------->HVH21                          <---------ANAC58   <---------ATHB12<---------ARR11(3) -->ARR11(3)  --------->ANAC58            <---------ANAC58   --------->ICU4  --------->ARR11(3) ---ARR11(3)  --------->ANAC58 <---------AHL20(2)       --------->TOE1(3)  <---------YAB1      <-----   tccgacatttccattgacgcattggtacttcattttttttgcattcgtgatcttctagccttaatcatggatcctttatgatctcttgtctaattcgctt  26867500                                                  <---------YAB1                               <-----                                                <---------ICU4                                <------                                                --------->YAB1                           <---------O2                     <----------ID1            --------->ICU4                   <-----------RAV1(1)     <---------CCA1(2)  <---------MYB59        <---------ATHB12                 <---------MYB46(3) -----DOF2     <-------TEIL            <----------DOF2                   <------ZmHOX2a(1)    <------   tgctcttctatctgaaattcatagggccaaactatgggggactttagtaatcatgagaaacttggatttgatttaggagcatttgttggagacttggctt  26867600  Previous    Next  AGI:  At1g71260.1    Description:  ATWHY2 (A. THALIANA WHIRLY 2); DNA binding. similar to ATWHY1/PTAC1 (A. THALIANA WHIRLY 1), DNA binding / telomeric DNA binding [Arabidopsis thaliana] (TAIR:AT1G14410.1); similar to unknown [Populus trichocarpa] (GB:ABK94132.1); contains InterPro domain Plant transcription factor (InterPro:IPR013742); contains InterPro domain ssDNA-binding transcriptional regulator; (InterPro:IPR009044) Range:  from: 26865319    to: 26867084    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g71270.1    Description:  POK (POKY POLLEN TUBE). similar to Vps52/Sac2 family protein [Arabidopsis thaliana] (TAIR:AT1G71300.1); similar to hypothetical protein OsJ_010819 [Oryza sativa (japonica cultivar-group)] (GB:EAZ27336.1); similar to hypothetical protein OsI_011707 [Oryza sativa (indica cultivar-group)] (GB:EAY90474.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41972.1); contains InterPro domain Vps52/Sac2 (InterPro:IPR007258) Range:  from: 26867249    to: 26873677    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version