Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                            ------>MYB83                         <---------AHL20(2)                                          ------>MYB46(1)                      --------->AHL20(2)                                     ------->GAMYB                            <---------WOX13(1)                                     --------->AtMYB61                      ----------->GT1                                    --------->MYB46(3)                      --------->ATHB12                                    <---------MYB55(2)                      -------->HAHB4                                   -------->P                              <---------ATHB12                                  ------->GAMYB                    <---------YAB1         <---------ICU4                                 --------->MYB46(3)  <---------AHL20(2)    --------->ICU4 --------->ATHB51                             --------->At5g28300     --------->AHL20(2)<---------AHL20(2)--------->ICU4                            ----------->GT1         --------->AHL20(2) --------->AHL20(2)<---------YAB1                            --------->TOE1(3)     <----------DOF2--------->AHL20(2)    --------->YAB1   --------->GLK1(2)        --------->TOE2(3) <-----------GT1    <---------AHL20(2)   ------>ZmHOX2a(1)   tcaagactctggtttgttttttctgttaaaccgtaacaaccaccaaattttccttttaattttgtatttatttttaaatgattaattcctcataatttcc  25565400                       --------->AHL20(2)             ---------->DOF2                           <----------DOF2         --------->ARR14(2)                      --------->ANAC58         <---------ARR14(2)                      --------->ANAC46                                   <         --------->GLK1(2)                       --------->ANAC58                          ----------     ------>NtERF2 ----------->GT1        ------>ZmHOX2a(1)             <---------GLK1(1)  XXXXXXXXXX   ctcgcgctgcgaatccaaagcctgtataaatactctctagcttcctctctcaagctactttctctctcaacttgaaatctctctctctctagccaaagaa  25565500                                      --------->ARR14(2)           <---------HSFB2a(1)        <---------ARR14(2)           <---------HSFC1(2)        <-------GAMYB           --------->HSFB2a(1)      <---------DEAR3(2)           --------->HSFC1(2)       <---------MYB46(3)     <---------HSFB2a(2)           <---------DEAR3(1)                                      <---------ARR11(3)     --------->HSFB2a(2)          <------NtERF2                                          <XXXXXXXXXXX     <---------LBD16            <---------DEAR3(1)                                    ------------>CBF ----------DOF2     --------->HSFB2a(2)                        --------->At5g28300<---------AtLEC2 >DOF2     <---------At4g35610 <---------LBD16                ----------->GT1 <---------DAG2 XXXXXXXXXX>MIR399E <---------HSFB2a(2)            ------------>CBF           <----------DOF2   aacttttctcggaagcttctctctcgaaattttctcggcggtttctcttcttctccaattttctcggtaaatttctatcgctttacatgtcaatttcttc  25565600                                                                           ----------->HVH21                                                                          ------>ZmHOX2a(2)                                                                         <---------At4g35610                                                                         <------ZmHOX2a(2)                                                             --------->HSFB2a(2)                                                             <---------HSFB2a(2)                                                       <---------YAB1    --------->CCA1(2)                                                      <---------ARR11(3)--------->ARR11(3)                                                      --------->ARR11(3)<---------ARR11(3)                                          <------------CBF   <---------LBD16        <-----------GT1       --------->ATHB12              --------->At5g28300 <----------DOF2--------->AGP1   <---------MYB52(1)  --------->GLK1(2)           <<<<<<<<<<GATA-1     <---------GLK1(2)    --------->ARR14(2) <---------GLK1(2)           --------->GLK1(1)   ----------->ARR10      <---------ARR14(2) XXXXXXXXXXMIR2933A/B        <---------GLK1(1)<---------ANAC46          <---------AGP1  <-------GAMYB   tccgattcttgatttcatcgttttgaatttgaaatccactgtgaaattgctgagattatctttctcggaaactagatctgacttattttccgttgtttga  25565700                    <-------TEIL             <---------ARR14(2)             --------->ARR14(2)                                        ----------->GT1            <---------MYB52(1)                                         --------->LBD16          <---------ANAC58                                            --------->LBD16          <---------ANAC58                                           <---------LBD16       <---------ARR14(2)              <-----------RAV1(1)      <-----------HVH21                 <--       --------->ARR14(2)        --------->GLK1(1)           <------------CBF                   <----       --------->GLK1(2)         <---------GLK1(1)          <---------GLK1(2)                  <-----   --------->HSFB2a(2)        <---------YAB1      <---------ANAC46  <---------LBD16           ------>NtERF2   ttcttcgcgattccgtttccgatgcataaattctgatttctctgtggcgattttgtgtaacagaattgtcaccgggaaaaatggaaaacaaaatcgcgcc  25565800                                                  <---------ANAC58                                                  <---------ANAC46                                                  <---------ANAC58                                               <---------MYB52(1)                                              <---------DEAR3(2)                                            <------NtERF2                         --------->GLK1(1) ------>NtERF2                        --------->ARR14(2)<---------DEAR3(1)                      --------->LBD16     <---------ANAC46                     --------->RAP2.6(2) --------->RAP2.3(1)                     --------->LBD16     --------->RRTF1(1)                     --------->RAP2.3(2) --------->ATERF1(1)                   ------>NtERF2         <------NtERF2                   --------->LBD16      <---------RAP2.6(1)                  --------->DEAR3(1)    <---------RAP2.3(1)               --------->ARR14(2)       <---------RRTF1(1)               <---------ARR14(2)       <---------ATERF1(1)              --------->ZAT2            ------>NtERF2              <---------ZAT2            <---------ERF1              --------->HSFC1(2)       <---------ATERF1(2)              <---------HSFC1(2)       <---------RAP2.3(2)              --------->At4g35610      <---------RAP2.3(3)              <---------At4g35610      --------->ATERF1(2)              <---------HSFB2a(1)      <---------RAP2.6(2)              --------->HSFB2a(1)      <---------DEAR3(1)        <---------LBD16<------NtERF2   <---------ANAC46        --------->At4g35610            <---------RRTF1(2)       --------------------->WRI1      <---------RRTF1(3)     ---------->DOF2<---------LBD16   <---------ABI4(1)<---------CCA1(2)                        -----     <---------At5g28300<---------ARR14(2)--------->DEAR3(1)                               ---------- -------MYB52(1) <---------LBD16      --------->ATERF1(1)     <---------ZAT14           --------->ANAC58 -----ANAC46 ----------->ARR10      --------->ALFIN1---------->ID1       --------->ZAT6 --------->ANAC46 -NtERF2<---------At4g35610 <-------TEIL<---------ORA47(2)    --------->ZAT14           --------->ANAC58   gtttagttacagcggaagctccgccggaaattcatccagtggcggcgtcgtttcgtcgtctctctactctgatcaactctacaagtcgactcgcaacata  25565900                                                                                                  ---              --------->CCA1(2)                                                                 <----              --------->ARR14(1)                                                                <----             <---------ARR11(3)            --------->ANAC58                                     -----             --------->ARR14(2)            --------->ANAC46                                   -------             --------->ARR11(3)            --------->ANAC58                          <---------HSFB2a(2)             <---------ARR14(2)     <---------ZAT6                                   --------->HSFB2a(2)    ------->GAMYB----------->GT1----------------------->TaNAC69(2)               <---------ANAC46 <-- ----------->RAV1(1)           <---------ANAC46                         ---------->DOF2    --------->ZAT18 ----->DOF2  --------->ARR11(1)<---------ANAC58                      --------->At4g35610   <---------ZAT14 ->RAV1(1) ----------->ARR10   <---------ANAC58                      <---------At4g35610   --------->ZAT14   atgcaacagcgtcaagatatggtgaatcgcgaggcgttgtgttacacgcgtctccatgaggcttcgcttgaagcagaagcgcttcgtctagagaacactg  25566000                                                              <---------ARR14(2)                                                              --------->ARR14(2)                                                           <---------HSFB2a(2)                                                           --------->HSFB2a(2)                                                 --------->ARR14(2)                                                 <---------ARR11(3)                                                 --------->AGP1                                                 <---------ARR14(2)                                                 --------->ARR11(3)                                                 <-----------ARR10                                                 <---------GLK1(2)                                                 --------->ARR14(3)     <------ZmHOX2a(2)                           <---------ARR14(3)                            <----- ------>GLK1(1)                                 <---------CCA1(2)                              <----- -----ZAT18                                    ----------->ARR10                     --------->At4g35610 -----ZAT14                           ------->GAMYB      <------ZmHOX2a(2)           <---------At4g35610 ---->ZAT14                    --------->At4g35610 ------>ZmHOX2a(2)             ------>ZmHOX2a(2) -->ANAC46  ------->TEIL       <---------At4g35610<------ZmHOX2a(2)             <---------GLK1(1) -------GLK1(1)           --------->YAB1     <---------At4g35610         <---------YAB1--------------   aactccgatcgatgaatcttcgtctcaagaatgagctcaacagtctcatcagatcttcgatccagaaccgatttgatcatcgatctccgcttcggatgct  25566100                                                        <---------MYB52(1)                                                       --------->At5g28300                                                       <-------GAMYB <---------ANAC46                            ------>NtERF2              ============================================MYC_MYB                           --------->DEAR3(1)         ----------->GT1<---------bZIP60(1)                          --------->RAP2.3(1)       --------->SPL1(2)--------->O2                          <------NtERF2             --------->SPL7   <---------O2                          --------->ATERF1(1)      <---------SPL1(1) <---------TGA2(1)                          --------->DEAR3(2)      <---------SPL1(2)  --------->bZIP60(1)                          --------->ORA47(2)      <---------SPL7     --------->TGA2(1)                         <---------ATERF1(1)    --------------->AtSPL3                         ------>NtERF2          <---------------AtSPL3      --------->YAB1                         <---------RAP2.3(1)   <------------------SPL14    <---------ATHB12                     ----------->HVH21        --------->ARR14(2)    <-----------STF1         <-------   <---------ATHB12  ----------->TGA1         <---------ARR14(2)   <---------TGA2(2)     <---------TGA1a ----ANAC58    <---------TOE1(2)         --------->GLK1(2)        ----------->HVH21      --------->TGA1a ----ANAC58 ------>ZmHOX2a(2)<------NtERF2 --------->YAB1         ----------->TGA1       <---------O2 ------->WRI1  <---------TOE2(2)   --------->ALFIN1--------->SPL1(1)----------->STF1  ----------->HVH21   tagcaatctttcgatcggaggtaatgacgccgacgaagtggagaatcagaaccgtacggttaatcgcgatgacgtcaatgataagagtccgacgagtgtt  25566200                                                                                                  <--                                                                                              <------                                                                                             --------                                                                                             <-------                                                                                            <--------                                                                                            <--------                                                                                           <---------DEAR3(1)                                                                                           <---------RAP2.6(2)                                                                                       <---------MYB46(3)                                                                                      <---------DEAR3(1)                                                                                      <---------AtMYB61                                                                                      --------->ALFIN1                                                                                      <--------------                                                                                   --------->ALFIN1                                                                                   <---------DEAR3(1)            ------>ZmHOX2a(2)                                                      <---------AtMYB61           --------->At4g35610                                                   <------MYB83--------           <------ZmHOX2a(2)                                                     <------MYB46(1)-----          <---------ARR14(2)                                                    <---------AtMYB61<---          --------->GLK1(2)                                                     --------->MYB111(2) -          --------->ARR11(3)                        ------>ZmHOX2a(2)           <---------DEAR3(1)---          --------->ARR14(2)                       --------->CCA1(2)            --------->ALFIN1<----          <---------ARR11(3)                       <------ZmHOX2a(2)         <XXXXXXXXXXXXXXXXXXXXMIR408          <-----------ARR10                       --------->ARR11(3)     <-----------HVH21 <---------RAP2.3(2)          <---------AGP1                          --------->AGP1        --------->ANAC58 --------->ALFIN1      --------->YAB1                         <-----------HVH21     <---------TOE2(3)<---------MYB46(3) --ZAT6  <------ZmHOX2a(1)      ---------->DOF2   <---------ARR11(3)    --------->ANAC58<---------SPL7   atggagaatgaggatctgaatcgctcttcgcttccaaagagcatctctgtgagatctaatggctactctaaggcaagtcagggaggtggtggtgcggctg  25566300  Previous    Next  AGI:  At1g68200.1    Description:  zinc finger (CCCH-type) family protein. similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT1G66810.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42208.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) Range:  from: 25565781    to: 25567611    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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