Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Publications Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   1        10        20        30        40        50        60        70        80        90        100     <-----------HVH21 --------ALFIN1 ------ALFIN1 ----AtSPL8                                  ----------->GT1            ---------->DOF2 --->AtSPL8                          <---------ALFIN1              ------>ZmHOX2a(2) <-------GAMYB   cacacagtcataccgcggatatcataatcttcaatctccgcacagtcccgtaaaaaaaccctaatttgatcgcgaaaagctccgttccgttgtatcggaa  24644800                                                          =================================bZIP_DOF                                                          --------->TGA1a                               <----------DOF2            --------->O2                               =====================================bZIP_DOF                        ----------->GT1                   <---------O2          <----------DOF2   acccatcttccccgaatcgttgtagattgtaaacttttggcttccgttttctcttacgacacgtttcgatgattgggactggcatttttgagtgatgata  24644900                                                                                 -------->P                                                              >>>>>>>>>TBF1      <-----------GT1                                                           >>>>>>>>>TBF1        <-----------GT1     <----------DOF2<----------DOF2                <----------ID1          <------ZmHOX2a(1)   gagttcgcttttgattctgagacttttagggttttgagattttagcttcgatggagacgaagaagaagaagctctgaggaatttacccgctcaaatgcgt  24645000                                                                   <-------GAMYB                                                                  ----------->GT1                                                                <-------GAMYB                       -                                                           ----------->HVH21                       <-                                                          ------>ZmHOX2a(2)                       <--                                                         <------ZmHOX2a(2)                        <--                                                        <---------AGP1                ----------->HVH21                                                        --------->AGP1               ------>ZmHOX2a(2)                                                      ----------->ARR10       <-------TEIL <-------GAMYB   tttgtgtagttttagaaatacccttggtgttgattattatctacgtaattgccactgagatctgacggttgttaattgagttcatgatctgacggttgta  24645100                                                         *TSS     ---------->ID1                                <-----------HVH21 <----------DOF2                                   <--------ZAP1 ----->ZmHOX2a(2)                                 <------MYB83 -----ZmHOX2a(2)                              ------->GAMYB <------ZmHOX2a(2) ---------ARR10           ------------>MYB.PH3(2) <------MYB46     <-------GAMYB -------AGP1          ------->GAMYB  ---------->DOF2  ----------->RAV1(1)          <-----------GT1   gatctttgccgtttatctttgtaaccgaagtttgttagtcaaagtcaacagtcggtcaacagatcactctgttgagtatatatttttacaaacctttcta  24645200                                                                                     <------MYB83                                                                                     ----------->GT1                <-----------GT1                                                      <------MYB46  ---------->DOF2                                                       --------->ALFIN1   ttttaaaagctctattattcacatttttaatatttattcttgtgaatgaagagttcgaattttatttatattatgtggagatatagttggtgattttgcg  24645300         <-----------HVH21          ---------->DOF2                                ---------->ID1 <----------DOF2        <----------DOF2                 --------->ALFIN1<-------TEIL   aagctttaatatgtcatcggtgttaactttaagttattgaaagaacttagatgttagtgtggtgttttcgtatattcataaatttgttttttttttgttt  24645400 <-----------RAV1(1)                                            ---------->DOF2                     <   tttatggtgctggaaattttaaataatatttaattcagtgggaaagtttcaaaaatacaaccttttaaaagcactattgttttattctctattttcaaaa  24645500                                ----------->GT1                ----------->GT1 ----------ID1            ---------->DOF2          ---------->DOF2   <-----------GT1<----------DOF2   ataccacaaatatggatttataaattcttaaagcatgttataaaaaatatttataaagttttatatggtttttagcattttaaaaacttttcagtaatta  24645600                                                   ----------->GT1                           <------- ---------->ID1                                   ----------->GT1                    <<<<<<<<<RAP2.2   tttgttgtataaaatatactagtattgattttgttatagactaaatttgaatgtgttaaatattatataccaatacaaaaatattttagatattataaca  24645700  Previous    Next  AGI:  At1g66170.1    Description:  MMD1 (MALE MEIOCYTE DEATH 1); DNA binding. similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT2G01810.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN73422.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011) Range:  from: 24642348    to: 24645157    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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