Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                           --------->AHL20(2)                         <---------AHL20(2)     <---------WRKY18(1)      --------->MYB46(3)                  --------->ANAC58           <---------ANAC58           >>>>>>>>>>>>>>>>>LFY                  --------->ANAC58           <---------ANAC58  --------->YAB1      --------->ANAC46  --------->AHL20(2)   <---------ANAC55(2)        ------->TEIL      --------->ANAC55(2)--------->AHL20(1)  --------->ANAC55(2) <---------YAB1                    <- ---TEIL     ---------->DOF2   <---------ANAC55(2)            <---------YAB1        --------->GLK1(2)   catattatacataacaaaagaagcaattttattacatatgcacaattacttgaccataaaactgattataaatgaaccaatgtgagaaactgaaaacaat  24101200             <---------ANAC58                                       --------->ZAT18             <---------ANAC58                                     <---------WOX13(1)            <---------ZAT2                                       <---------ANAC58        --------->TOE1(1)                                        <---------ANAC58       <---------LBD16                                          --------->ATHB12      --------->TOE2(2)                                     --------->ATHB12 --------->ICU4 ---------      --------->TOE1(2)    <-----------HVH21               <---------YAB1  --------->YAB1   <-------- ----------GT1     ---------->DOF2           --------->GLK1(2)<---------WOX13(1)  <---------AHL20(2)   tttacaaacctcggagcttgttaaagacttgtcccatggcgatggataatcttcttctcgtctgattgattgcacaaaaatgattttttttttttttaat  24101300                                                                ------->GAMYB                                                               --------->MYB46(3)                              ----------->TGA1                 --------->ANAC46                              ----------->HVH21               --------->At4g35610                --------->ALFIN1                             <---------DOF5.7(2)                <---------AtMYB61                            --------->MYB52(1)             <---------DEAR3(1)     --------->ARR14(2)      <---------WRKY45     ------>ZmHOX2a(2)<---------O2  ------->TEIL            <---------WRKY12    <---------At4g35610     <---------ANAC58                <---------WRKY38(1)         <---------ATHB12   <---------ARR11(3) <---------ANAC58                   <------MYB46(1)          --------->ANAC58   --------->ARR14(2) <---------ANAC46               <-----------RAV1(1)     <---------LBD16 <-------   <---------ARR14(2) <---------ANAC58           --------->AHL20(2)     <---------AHL20(2)   --------   <---------AGP1     <---------TGA1a            <---------AHL20(2)     --------->AHL20(2)   --------  <---------CCA1(2)  <------NtERF2  <---------ARR14(2)   <------MYB83  --------->AHL20(2)  ------->TEIL >AHL20(2)   *TSS --------->ATERF1(1)      ------------>CBF--------->WRKY18(1)--------->ANAC46 -AHL20(2)--------->ALFIN1  <---------ANAC58   <-----------TBP<---------At4g35610 --------->ANAC58   atgtggatctgagtgggggtggaggcgtgagcgtgacgaatttgggccaatttatatgttggtcaacggcccatttatttgcgcaagctaatgaatcatg  24101400                                                                              <---------ZAT2                                                                              --------->ZAT2                                                                              --------->At4g35610                                                                              <---------At4g35610                                                                             ------->TEIL                    <---------DOF5.7(2)                                   <---------ANAC55(2)                  --------->DOF5.7(2)                     ---------->DOF2 <---------O2 --ICU4           <---------MYB52(1)                   <------NtERF2      --------->ANAC55(2) ->ATHB12        --------->TOE2(3)                     <---------At4g35610<---------REM1(1) ->YAB1  ----------------->AGL1  ----------->GT1       --------->At4g35610--------->O2 ----------->RAV1(1)   ggctcaaatgggccttaatcgttaatggtgaagaaatgtaaatgggagagagaaggcagcgaaagcgaaacaagagacgtagctgaataccacagaaaca  24101500                     ------>MYB46(1)                     ------>MYB83                                          <---------ARR14(2)                   --------->MYB46(3)                                   --------->YAB1                   <---------ALFIN1      --------->ARR11(3)            <---------YAB1                   --------->AtMYB61     <---------ARR11(3)          <---------ICU4                  ------------>CBF       --------->ARR14(2)       <---------ICU4           --------->At4g35610           <---------ARR14(2)      ------>ZmHOX2a(1)       --------->GLK1(2)                 <-----------ARR10 <---------ARR11(3)          --------->ZAT6       <---------ARR11(3)                <---------ARR11(1)--------->ARR11(3)   <---------MYB52(1)       <-----------ARR10                <---------CCA1(2) <---------CCA1(2)--------->ARR14(2)   -----       <---------ARR14(2)         <----------DOF2     <-----------TBP--------->YAB1    <-----------GT1       --------->ARR14(2)  <---------CCA1(2)      <---------AHL20(2)--------->ICU4   <-----------GT1   tggagccagtatctgcttccaccaatcccatctcttctttccatatctccatttttttttatatctcctaattatcatattcgtttttttcactataatc  24101600                                                                         --------->AtMYB61                                                                       ----------->RAV1(1)                                                                       ------>NtERF2                 <-----------GT1                          <---------ANAC46           <---------MYB46(3)   <-----------GT1         <---------MYB46(3)         <------------CBF      <-----------GT1          --------->MYB55(2)      ------------>CBF  <---------AHL20(2)        <---------AtLEC2    --------->RAP2.6(2) ---->TOE2(3)   *TSS   --------->AHL20(2)    <-----------GT1      --------->MYB59   taaacttctccaattgttgaaaccattttatatttatctcttcttattttctgcatggtggtttgaattaggccaccaaaaaactcttggataaaaaaaa  24101700                                                                                                    <                                                                                                    <                                                                                                   <-                                                                                                   <-                                                                                                  <--                                                                                               ======                                                                                               <-----                                                                                               ======                                                                                               ======                                                          <---------ALFIN1                     ------               <----------ID1                           <---------ALFIN1                       <-----               ----------->GT1                          --------->ANAC58                       ------             ---------->DOF2                            --------->ANAC58                       <-----        ----------->GT1          <---------GLK1(2)    <---------ALFIN1                        <------     ------------------------>ANAC81                ----------->RAV1(1)--------->KAN4(2)     <-------   aactgagaaacagaaaaaagaaaaaacaaaacacacattctcgatttgtctgtgccacacacactctcttgcacattcttgtctcgacaatactctcagg  24101800        <---------ANAC58        <---------ANAC58   --------->MYB52(2)  --------->ATHB12 ----------DOF2 -------GAMYB --------ANAC58 --------ANAC58                   --------->GLK1(2) -----TEIL                        --------->ARR11(3) =======MYC_MYB                   <---------ARR11(3) ----ZAT2              <------ZmHOX2a(2) ==========bZIP_DOF   --------->ARR11(3) ==========================bZIP_DOF--------->RVE1(1) --->At4g35610        <---------ARR14(3) ----TGA1a            <---------ARR11(3) --->ZAT2<----------DOF2------>ZmHOX2a(2) ----At4g35610        --------->ARR14(3)                                                           -- ---TOE1(2)           <-----------ARR10    <----------DOF2                                       <--- ----RAV1(2)    <----------DOF2  <---------GLK1(2)             <-------TEIL                      ----   tgcgttattggctttgctctttaagatcttactcaaaatctctgtctttggaatctatccatagatgcaaaatttgattttgaagtgattcttcatcttc  24101900                                                  <---------ZAT2                                        <---------WOX13(1)                                      <--------ATHB1                                                <                                      -------->HAHB4                                             <---                                      --------->ATHB12            --------------->AtSPL8         <---                                      <---------ICU4              --------->DAG2           --------->TOE2(3)    <---------ANAC58                 <---------YAB1               <---------------AtSPL8  -----------    <---------ANAC58                 --------->ICU4           --------->YAB1              <---------ANAC55(2) ------->ATHB12                      <---------ATHB12   --------->AGP1       <----------DOF2<-------- ------------AGL15                 --------->YAB1 <---------At4g35610        ----------------------->TaNAC69(2) ----------->AGL15                --------->ICU4  --------->ZAT2 ---------->DOF2          --------->ANAC55(2)   ttaattgggtttcaatggattagtcaaatttgggtagtaatgattggcttcgagctcagaactagaataaagtacaattcttttgctggattacgttatt  24102000                                                                   ---------->DOF2                ---                                                                 >>>>>>>>>RAP2.2                 <---                                                               --------->ARR11(3)               ----- ----------DOF2                                                <---------ARR11(3)               <---- ------AHL20(2)                                               --------->GLK1(1)            --------->ARR14(2) --------GT1       --------->ANAC46   <----------DOF2       --------->YAB1            <---------At4g35610 >GT1   --------->ICU4            <---------GLK1(2)        <---------YAB1             --------->At4g35610 -MYB52(1)<-----------GT1   --------->ARR11(3)        <---------ZAT6      --------->ICU4   <---------ARR14(2)   aacttttgtaattttcaatacccacaagttgatattgattctttgtgtctgaaattgtgttatgatatctaaagtattgatttttgttagcagaatacga  24102100  Previous    Next  AGI:  At1g64850.1    Description:  calcium-binding EF hand family protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G37445.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN70389.1); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) Range:  from: 24100098    to: 24101313    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g64860.1    Description:  SIGA (SIGMA FACTOR A); DNA binding / DNA-directed RNA polymerase/ transcription factor. similar to SIGB (SIGMA FACTOR B), DNA binding / DNA-directed RNA polymerase/ transcription factor [Arabidopsis thaliana] (TAIR:AT1G08540.1); similar to Sig1 [Sinapis alba] (GB:CAA75859.1); contains InterPro domain RNA polymerase sigma-70 factor; (InterPro:IPR000943); contains InterPro domain RNA polymerase sigma-70 region 3; (InterPro:IPR007624); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain RNA polymerase sigma-70; (InterPro:IPR014284); contains InterPro domain RNA polymerase sigma factor, regio Range:  from: 24101616    to: 24104615    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version