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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
Go to graphical and table display
1 10 20 30 40 50 60 70 80 90 100
------>
ZmHOX2a(2)
<---------
ARR11(3)
--------->
ARR11(3)
<----------
DOF2
---------
ANAC46
<-----------
GT1
----
bZIP60(2)
<<<<<<<<<
TBF1
<---------
CCA1(2)
-->
HVH21
<-----------
GT1
<---------
ANAC46
>
DEAR3(1)
----------->
GT1
------>
ZmHOX2a(1)
---------->
ID1
<----------
DOF2
ttgccttgatcttagaacacagtgtaacttcttcttcccattcctcatcttcatcaacttctacttgtcgtttatctttccttttactactaacatcaga
23042600
<---------
At4g35610
<---------
ANAC55(2)
--------->
ANAC55(2)
--------->
YAB1
<---------
ICU4
--------->
TOE2(3)
---
--------->
ICU4
--------->
TOE1(3)
---
<---------
ATHB12
--------->
YAB1
------>
ZmHOX2a(1)
----
<---------
ZAT18
--------->
YAB1
<----------
DOF2
---------
--------->
ANAC55(2)
----------->
HVH21
--------->
WOX13(1)
------>
ZmHOX2a(1)
-------->
P
--------->
WOX13(1)
--------->
TOE2(3)
<---------
YAB1
---------
<---------
MYB111(1)
--------->
At4g35610
<---------
ANAC46
<--------
<---------
MYB111(2)
----------->
RAV1(2)
<---------
MYB52(1)
<---------
TOE1(2)
aaaccacttacctattgtgcaatcatcacctgactctatcttaaccataacttcaacttcttcgttgcgcttatcaatccttttcgcagtattcctctga
23042700
<---------
TOE1(2)
<---------
ANAC55(2)
<---------
ARR11(1)
--------->
ANAC55(2)
<---------
ARR11(3)
<---------
ATHB12
--------->
ARR11(3)
--------->
At4g35610
--------->
WOX13(1)
--------->
YAB1
--------->
ARR14(2)
<---------
At4g35610
------>
ANAC58
--------->
YAB1
<-----------
ARR10
--------->
MYB46(3)
------>
ANAC58
--------->
YAB1
<---------
ARR14(2)
<---------
At5g28300
--->
TEIL
<---------
ICU4
<---------
GLK1(1)
<---------
ANAC58
>
At4g35610
<---------
ATHB12
<---------
CCA1(2)
<---------
ANAC46
<---------
ICU4
-->
RAV1(2)
--------->
ICU4
<---------
AtLEC2
<---------
ANAC58
--------->
YAB1
-
At4g35610
--------->
WOX13(1)
<----------
DOF2
------>
ZmHOX2a(1)
<-----------
GT1
acccaatcacttaatatgcaatcatcatcttcataatattcttctactttgcatatctttctccttcgtttcgcattccgtttaaccgctgaatcatcgc
23042800
--------->
ARR14(2)
<---------
MYB52(1)
<---------
ANAC58
--------->
HSFC1(2)
<---------
HSFB2a(1)
--------->
HSFB2a(1)
<---------
HSFC1(2)
---------->
DOF2
--------->
HSFB2a(2)
<---------
HSFB2a(2)
--------->
At4g35610
--------->
ZAT6
--------->
ATHB12
<---------
At4g35610
------>
ZmHOX2a(1)
<---------
DAG2
------>
ZmHOX2a(1)
--------->
ZAT2
<---------
ANAC58
<<<<<<<
ZML2
<---------
YAB1
--------->
GLK1(1)
tatcttcagctctcgaaagcttccgtttcctactatcactactactactagggctagaaccttttgacatgaatggtttcagagttctcttcttcctagt
23042900
--------->
GLK1(2)
--------->
ARR14(2)
<---------
YAB1
<---------
ARR14(2)
<---------
ARR11(3)
<---------
GLK1(2)
------>
ZmHOX2a(1)
--------->
ARR11(3)
--------->
LBD16
----------->
RAV1(2)
--------->
YAB1
<-----------
GT1
<---------
At4g35610
----
--------->
ANAC46
--------->
ATHB12
--------->
AHL20(2)
<----------
DOF2
---------->
DOF2
cgtccacgaatattgataagataattggaaacaattcatatgctccaatttaactccagaatccat
tctttagctcctgcaaacaaaaatcgccagtgat
23043000
<---------
ARR14(2)
--------->
ARR14(2)
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
<---------
AGP1
--------->
AGP1
--------->
GLK1(2)
--------->
ARR11(3)
>>>>>>>>>
RAP2.2
--------->
ARR14(2)
<---------
ARR14(2)
<---------
ARR14(2)
<------------
CBF
--------->
ARR14(2)
<---------
ARR11(3)
--------->
ANAC46
--------->
AtLEC2
<
<---------
CCA1(2)
--------->
REM1(1)
------->
TEIL
--------->
ARR11(3)
---------
------->
GT1
<---------
GLK1(2)
--------->
MYB52(1)
<---------
ARR11(3)
<--------
ggtaattcagatctatgaaacagattcttacaccaaaattgaaacaaaacgaacatgcagatttgaatatctaaaacagagacaacaaattcgagttctt
23043100
--------->
AHL20(2)
---------->
DOF2
--------->
YAB1
------>
MYB83
<---------
ICU4
--------->
YAB1
<---------
YAB1
--------->
YAB1
<---------
YAB1
--------->
AHL20(2)
------------>
CBF
--------->
TOE2(3)
<---------
ATHB12
--------->
ICU4
---------->
DOF2
<---------
ATHB12
----------->
RAV1(1)
--------->
WOX13(1)
--------->
YAB1
------------>
CBF
--------->
WOX13(1)
------>
MYB46(1)
------>
MYB46(1)
------
ZmHOX2a(2)
--------->
YAB1
------------>
CBF
------>
MYB83
<---------
AHL20(2)
-------
>
ARR11(3)
<---------
AHL20(2)
<---------
ARR14(2)
<---------
ATHB12
<---------
YAB1
<---------
ATHB12
-
ARR11(3)
--------->
AHL20(2)
--------->
ARR14(2)
--------->
WOX13(1)
--------->
ICU4
------------>
CBF
<---
cgatcataatcaaaattaatcgcaataaaacagtatatgatcaatcgattccaatcaaaaccaaacaacattattaaaaccaaatcaatcaaaagagaca
23043200
--------->
At4g35610
--------->
YAB1
<------------
CBF
--------->
YAB1
<---------
HSFB2a(2)
<---------
YAB1
=========================================================
MADS_MADS
<---------------
AGL15
--------------->
AGL15
--------->
HSFB2a(2)
<------
ZmHOX2a(2)
--------->
TOE2(3)
<---------
GLK1(1)
----------------->
AGL2
<---------
ARR11(3)
<---------
DAG2
<---------
ARR11(3)
<-----------------
AGL1
--------->
ARR11(3)
<---------------
AGL15
--------->
ANAC58
----->
CBF
<---------
GLK1(1)
<-----------
GT1
--------->
ANAC58
-----
---------
CBF
--------->
GLK1(1)
------------>
CBF
----------->
GT1
--------->
ARR11(3)
attgagtctagaattggaaatcagaagaagatcgaaaactcaattttaccttatgatgaacacaaacacagaaaaaaacaagctcgaagaactctgcaac
23043300
---------->
DOF2
--------->
At4g35610
<---------
ZAT2
<--------
------>
ZmHOX2a(1)
--------->
At4g35610
<--------
----------->
RAV1(2)
<---------
At4g35610
<---------
GLK1(2)
<-------
------->
TEIL
--------->
ZAT2
--------->
ARR14(2)
---->
ICU4
<-----------
GT1
<---------
At4g35610
<---------
ARR14(2)
<--
gatgaatctcctgtgaaaaacaaatctataaaccctagattccagctaagttagatgaaagagattgaacaaactttggattctctcaaacttagctttc
23043400
---------->
DOF2
<------
ZmHOX2a(1)
--------->
MYB59
<---------
HSFB2a(2)
--------------->
AGL15
---------->
DOF2
--------->
HSFB2a(2)
------
----------->
GT1
<---------------
AGL15
----------->
GT1
<---------
TOE2(3)
<---------
LBD16
<---------
ANAC55(2)
----------->
GT1
----------------->
AGL2
<---------
ANAC58
---------->
DOF2
--------->
ARR11(3)
<---------
ANAC58
--------->
YAB1
<----------
ID1
<---------
ARR11(3)
----------->
GT1
--------->
ANAC58
-
ANAC58
============================================================
MADS_MADS
--------->
ANAC58
-
ANAC58
<---------------
AGL15
--------->
CCA1(1)
----------->
GT1
--------->
ANAC46
---
DOF2
--------->
MYB52(1)
<---------
LBD16
--------->
LBD16
--------->
ARR11(3)
<---
--------
DOF2
--------------->
AGL15
----------->
GT1
--------->
RVE1(1)
--------->
DAG2
<---------
LBD16
ctttttatttcataactgaataaaggaaaaaagagaaatagtttattcggagaaatatcccagaattaggaaaaggaaaatttcttgagcacggaaaaaa
23043500
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AGI:
At1g62310.1
Description:
transcription factor jumonji (jmjC) domain-containing protein. similar to transcription factor [Arabidopsis thaliana] (TAIR:AT1G11950.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44407.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69660.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN60121.1); contains InterPro domain Transcription factor jumonji (InterPro:IPR013129); contains InterPro domain Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)
Range:
from: 23039704
to: 23042966
Orientation: Reverse
Links:
TAIR
MIPS
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publications
when using AthaMap.
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