Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                           ------>ZmHOX2a(2)                                                                                        --------->CCA1(2)                                                                                        <------ZmHOX2a(2)                                                                                       <---------AGP1                                                                                       --------->AGP1                                                                                       --------->ARR14(2)                                                                                       --------->ARR11(3)                                                                                      <---------GLK1(1)                                                                               <-----------RAV1(1)                                                                             --------->YAB1                                                                            --------->ICU4                    <---------ANAC58                                        <---------ATHB12                    <---------ANAC58                                     =======================HOX2a_HOX2a           --------->ARR14(2)                                            ======================HOX2a_HOX2a       <---------ZAT14                            <------ZmHOX2a(1) <---------HSFB2a(1)<---------ARR14(3)       <---------At4g35610                        --------->YAB1    --------->HSFB2a(1)<---------ARR11(3)       --------->ZAT14                    <---------At4g35610     ---------->DOF2     --------->GLK1(1)       --------->At4g35610         <---------GLK1(1)  --------->ANAC58   --------->ICU4<---------ARR14(2) -->TEIL   <---------ARR14(2)      --------->GLK1(1)  --------->ANAC58   ------>ZmHOX2a(1)     ------   cctatggactgcagaaactgaagcttgggagcaagggatttctcagcatctaggataagcaatcttgggaaagtcctaatgatgttggagatctgagaat  22965000   ------->TEIL <---------ZAT14                                                                               <----- --------->ZAT14                                                           <------ZmHOX2a(2)   ------ <---------ZAT18                         <--------P                <---------AtLEC2     <----------DOF2 --->GLK1(2)      ---------->DOF2 --------->GLK1(2)             <----------DOF2    <---------At4g35610   cagtgaacccatgacttctcaaaagactcagaacagaatcagggttgcccttgttatcgaaactgactttcatggagatcgattcagcgacttttgtagc  22965100                                                                        --------->RAP2.6(2)                                                                        ----------->RAV1(1)                                                    <---------CCA1(2) <---------At4g35610         ------->TEIL         ---------->DOF2     --------->AtMYB61   --------->At4g35610         ---      <---------ATHB12        =============================================bZIP_DOF           -------    ------>MYB46(1)        ----------->GT1=================================bZIP_DOF     =============    ------>MYB83        --------->GLK1(2) <----------DOF2        ====================================  <---------MYB59    --------->ANAC58    <---------DAG2          --------->TGA1a        <------ZmHOX2a(1) ----At4g35610       --------->ANAC58 <-----------GT1       <---------At4g35610      <------ZmHOX2a(1) --->At4g35610   ----------->GT1     ----------->HVH21      --------->At4g35610      ================   taaacctaatgaatcaacgaggtaagaaactgtaaagttgtgaccttttcgaccatctcttgagctcacatcagcagcaatagcagaggaggagaaggta  22965200      <---------At4g35610      --------->At4g35610    --------->DAG2                                                    ------>MYB46(1)   ---------->DOF2          <-------TEIL                 --------->HSFB2a(2) -------->GT1             <---------GLK1(2)             <-----------------AGL2   --------->AtLEC2 -->ARR11(3)------>ZmHOX2a(2)                         --------->ARR14(2)       <---------AtLEC2 ==================HOX2a_HOX2a                        <---------ARR14(2)<----------DOF2 =============bZIP_DOF---------->DOF2             <------NtERF2       ------>MYB83 ==================HOX2a_HOX2a                   ------>NtERF2      <---------MYB59    --------->GLK1(2)   ttggaaaaagctgatccattttgaaaaagattcactgaaaccctcaaatggcgccatttctgcaactggaccaactttcttccatggagaatcagagaat  22965300                                                                                              -------                                                                                        <---------HSFC1(2)                                                                                        --------->HSFC1(2)                                       <---------YAB1                                  ------->TEIL                               --------->At4g35610            ---------->DOF2       --------->ANAC46                             --------->ZAT18             --------->AHL20(2)         --------->ANAC58                             --------->ZAT14      <---------HSFC1(1)                --------->ANAC58            --------->AtLEC2 <---------ZAT14      <---------HSFB2a(2)     <----------DOF2 <----------DOF2    ---------->DOF2          <---------ZAT18      --------->HSFB2a(2)    --------->TOE2(3)<---------DAG2   acattacaaagacaatgcaaataactcacagtgtgctaaatctgattcaattcgagaaattgaataaagctctaacctttagagccacgaagctttttcg  22965400                                                                                                    <                                                                                                    <                                                  <---------MYB52(1)                                <                                              ------>NtERF2                                --------->ZAT2                                             --------->DEAR3(1)                            <---------At4g35610                 ------>ZmHOX2a(1)          *TSS <-------GAMYB                             --------->At4g35610             <---------ARR11(3)           --------->ANAC58                                 <---------ZAT2             --------->ARR14(2)           --------->ANAC58                             --------->HSFB2a(2)             <---------ARR14(2)       <---------HSFC1(2)             <---------ANAC58  <---------HSFB2a(2)            <---------CCA1(2)         <---------HSFB2a(1)            <---------ANAC58 <---------LBD16   <---------TOE1(2)                  --------->HSFC1(2)         <---------At5g28300--------->ARR14(2) --->ID1  ------>ZmHOX2a(1)--------->ALFIN1<---------ATERF1(1)  <-----------GT1     <---------ARR14(2)   cttcgcagtttcctatatcctctgtgtctgtgtgggaagaagcctcgcctccgttatacatcggtgttactgcttgccgaattcaagttctggagctgaa  22965500                                          <---------YAB1                                          <---------AHL20(2)                                         --------->AHL20(2)                                         <---------AHL20(1)                            <---------LBD16              ------------>CBF--------->LBD16   <-----------HVH21       --------->MYB52(1)                                          <-----------GT1  --------->ALFIN1        --------->MYB52(1)                             <---------HSFB2a(2) ---------ANAC46   --------->YAB1        --------->AHL20(1)         <----------DOF2    --------->ANAC46 ---------ANAC58  <---------ATHB12  <---------YAB1              <---------TOE1(2)  --------->YAB1  -- ---------ANAC58--------->WOX13(1)  ------------>CBF    <---------ZAT18  --------->HSFB2a(2)   <-----   ctgcgtgtcgctcaaattcaatcaaaacaaaccggatgatcaatataattcggtttagtcgactcgttcgatttactggaagcgattataaacaacatcc  22965600                                                            --------->ATHB12                                                           <-------TEIL       --------->ATHB12                                                 <-------TEIL            <---------ARR14(2)                                               --------->ARR14(2)        --------->ARR14(2)                --------->ANAC58               <---------ARR14(2)   --------->ARR14(1)                --------->ANAC46              --------->At4g35610   --------->CCA1(2)               ------->TEIL            <-----------TGA1  <-----------------AGL3      <-----------HVH21  <---------ALFIN1  <---------At4g35610     --------->ARR14(2) --------->HVH21--------->ANAC58     <-----------STF1  ------->TEIL--------->ARR11(1) --TEIL   <---------ANAC55(2)    ---------->DOF2--------->CCA1(2)  <---------ARR14(2)         <------   attgacatggtcacatgaacgcaacttccacttgggaaagtcgtcatcagatacatgaagcttcatttggatacggttcttgatttcttcaagtgtttct  22965700                 --------->TOE1(2)                 <---------SPL7               <------ZmHOX2a(2)              <---------ARR14(2)              --------->ARR14(2)              --------->ARR11(3)              <---------ARR11(3)   ----------->GT1            ----------->ARR10      <----------ID1                 ----------->HVH21          ---------->DOF2         ----------->GT1                <---------MYB59       --------->ANAC58         --------->DAG2                  ----------->RAV1(2)       --------->ANAC58        ---------->DOF2                 ------->TEIL                       <--     ---------->DOF2        ------>ZmHOX2a(2)                 ------>MYB46(1)                <------- <----------DOF2------>ZmHOX2a(2)--------->DAG2               ------>MYB83                 ---------- ---------------WRI1   <---------WOX13(1)                   <---------MYB59              ------->TEIL   atgctttcaaagcaaagatcgtccgattgatcgaaaagggaaaaaacatttggaactagagaccgaacctgactggtttagttgaaatgtgaaccgttat  22965800                                                                                <<<<<<<GRF7                                                                              ----------->HVH21                                                                            ----------->RAV1(2)                                                                           ------->TEIL        --------->At4g35610                                               ------>MYB46(1)        <---------At4g35610                                             <---------MYB59 ---------GT1                       --------->ANAC46           --------->MYB52(1) --MYB52(1)                         <----------ID1             -------->P ------>MYB83 ->GT1 <---------TOE1(3)    ----------->GT1      --------->ANAC46   ----------->HVH21       ---------   taactatttaagctaaaacaaattgttgaaatgtgactacgacaagaatataagtcatttgaaactaccagtgaccgaacctgacaggtttgtatcaaaa  22965900  Previous    Next  AGI:  At1g62120.1    Description:  mitochondrial transcription termination factor-related / mTERF-related. similar to mitochondrial transcription termination factor family protein / mTERF family protein [Arabidopsis thaliana] (TAIR:AT1G62085.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40592.1); contains InterPro domain Mitochodrial transcription termination factor-related (InterPro:IPR003690) Range:  from: 22963856    to: 22965444    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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