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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                      <----------DOF2
        --------->ANAC46                                                                        <---
        --------->ANAC58                                       ------->TEIL             <---------ARR11(3)
        --------->ANAC58  <---------TOE2(3)                 <---------ATHB12            --------->ARR11(3)
-----GLK1(1)      <----------DOF2                      --------->ANAC46             ---------->DOF2
------------------>TaNAC69(2)                    <---------At4g35610                --------->ZAT14
--YAB1  --------->ANAC55(2)  <---------WOX13(1)  --------->At4g35610             ----------->GT1<---
 
tgcccttgttcacgaaactgactttctttgagattgattcagcgagttttgtagctaaacccaatgaatcaacgaggtaagagacagtaaagttcttcac  22963000
                                                                                                <---
                                                                                           ------>NtERF2
                                                                                          --------->ANAC58
                                                                                          --------->TGA2(1)
                                                                                          --------->bZIP60(1)
                                                                                          <---------bZIP60(1)
                                                         --------->At4g35610              --------->ANAC46
                                                         <---------At4g35610              --------->ANAC58
      <---------CCA1(2)     --------->ZAT6            ---------->DOF2                     <---------TGA2(1)
    --------->AtMYB61<---------ATHB12        <------ZmHOX2a(1) ------>ZmHOX2a(2)       ----------->HVH21
------DAG2    --------->At4g35610            =========================HOX2a_HOX2a--------->TOE2(3) -
-------DOF2   <---------At4g35610   --------->At4g35610--------->DAG2     ----------->RAV1(1)   ----
 
ttttcgaccatctcttgagctcaaatcagtagcactagcagaagaataggaattagaaaaagctgatccattttgcacaacaaatctcaaatgacgccat  22963100
             --------->HSFB2a(1)
            ------>MYB83                                                                --------->LBD16
            -------->P                                                                 <---------HSFB2a(2)
            ------>MYB46(1)                                                            --------->HSFB2a(2)
          <---------MYB111(2)                                                   --------->MYB46(3)
          <---------MYB46(2)                                                   ------>MYB46(1)
          <---------MYB59                                                   --------->MYB46(3)
          <---------MYB111(1)                                             <---------ARR14(2)
          --------->MYB46(3)                  ---------->DOF2             --------->ARR14(2)      --
------ARR14(2)                            ----------->HVH21           --------->At4g35610    -------
-------->HSFB2a(2)                      --------->ANAC55(2)<---------ARR14(2)  ------>MYB83  <------
----->ARR14(2)       <---------AtLEC2   <---------ANAC55(2)--------->ARR14(2) ----------->RAV1(1)---
 
ttctgcaactgtaccaaccttcttccatggagtatcacagaatacatgacaaagaaaatgcgaatacaagaagagcagaaccaacaaatcccagaagtgt  22963200
    --------->GLK1(2)          --------->HSFB2a(2)                           <------ZmHOX2a(1)
    <-----------ARR10          <---------HSFB2a(2)                --------->ATHB12
------->DAG2   <---------MYB52(2)                                <---------YAB1
---->GT1 --------->ANAC46      <---------HSFC1(1)              --------->MYB52(1)
---ZAT6 -------->P    <---------MYB52(1)                      --------->TOE2(2)                 ----
------->DOF2   --------->MYB46(3)        --------->GLK1(2)    --------->TOE1(2)            <-------TEIL
 
aaaagcgattctaccccaactatccgtttctattcgagaagaagactctgaaaatttctactaaacttacgattgagcgaggaagaagagcaaattcatt  22963300
                                                                                      --------------
                                                                                    <-----------GT1
                                                                              ------------>CBF
              <---------DAG2                                                 --------->CCA1(2)
            ------>MYB46(1)                                                  <------ZmHOX2a(2)
            ------>MYB83                        <---------------AGL15       <---------ARR14(2)
           <---------ALFIN1                     --------------->AGL15       --------->ARR14(2)
          <---------MYB59                 <---------DAG2                    --------->ARR11(3)
        --------->PCF2               ----------->HVH21                      --------->AGP1         -
      ----------->HVH21   ----------->GT1 <----------DOF2                   <---------ARR11(3)     -
  <---------ATHB12      <---------GLK1(2)<---------DAG2                    *TSS   <---------ATHB12 -
--------->WOX13(1)<---------YAB1   --------->ALFIN1                     ---------->DOF2   <---------
----->YAB1--------->MYB46(3)   ---------->DOF2  ====================================================
 
catcaatcagtgacccaccttctcatagattgttaaaagtgtgacctttttctccatagagaattagagaagactcaaagatccaattatccaaattgag  22963400
<------NtERF2
--->AG --------->AHL20(2)
-------->ANAC58
---------->GT1                     ---------->DOF2                             <-----------RAV1(1)
-------->ANAC58          <---------TOE1(3)                            --------->AHL20(2)
---CBF <---------AHL20(2)<---------TOE2(3)                          --------->YAB1
====MADS_MADS        <----------DOF2                 <---------AHL20(2)   --------->YAB1
 
ggaggcaaaattaaaaaatgagctctttagggtttaggcaaagccctcgttttgttttaatttagaactaaaaataaacatactgttgttatttggctat  22963500
                                 <-----------GT1                                     ---------------
                                <---------YAB1                        --------->ANAC58
                              <--------HAHB4                          --------->ANAC58       <------
                              <---------ICU4     ------->GAMYB        --------->ANAC46   ---------->DOF2
                             <---------YAB1      ----------->RAV1(1) --------->ZAT18 <--------------
                      ------->GAMYB     <---------REM1(1)            <---------ZAT18<---------------
                   ----------->RAV1(1)  ----------->GT1            --------->At4g35610------>ZmHOX2a(1)
                  --------->MYB46(3)   <---------ARR11(3) <----------DOF2           ----------------
 
acttgtttttgtctcacaacaacaacagaagtattattacaagatgtaacaacgacatagactttacatgagcacacaagagtgtcttcctctaaaggtc  22963600
                                                       <---------ANAC58
                                                       <---------ANAC46
                                                       <---------ANAC58
                                                      --------------->AtSPL8
                                                      --------------->AtSPL3
                                              <---------YAB1
                                          ------>ZmHOX2a(1)
>AGL15                                   --------->TOE1(3)
-----HVH21            <-----------RAV1(2)--------->TOE2(3)                                      <---
-AGL15         <---------ANAC58       --------->ARR11(3)                           ----------->GT1
--AGL1         <---------ANAC58       <---------ARR11(3)                      ------>ZmHOX2a(1) <---
->AGL1         <---------ANAC46 ----------->GT1 <---------GLK1(2)     --------->YAB1    ---------->DOF2
 
acatactatatgtccatttcttggaccagaagagtgagtaatatccttcaagattgtttcgtacaagactaattcatcatccttcagggttaaaagtatt  22963700
                         ------>ZmHOX2a(2)
                        <<<<<<<<<GATA-3
                        <<<<<<<<<GATA-1
                        <<<<<<<<<GATA-4
                        <------ZmHOX2a(2)
                        <<<<<<<<<GATA-2
                       --------->ARR11(3)
                       <---------AGP1
                       <---------ARR11(3)
                      <---------CCA1(2)                                                <---------ANAC58
                    --------->HSFB2a(2)                  <-----------HVH21             <---------ANAC46
------ANAC58        <---------HSFB2a(2)            ------>MYB46(1)          <-----------RAV1(1)
------ANAC58  --------->ARR14(2)                   ------>MYB83 ----------->GT1        <---------ANAC58
 
cgtgttcagacaatccaaaacctctagatctctattctagttctaccaataacctacatatgtcatgtagtaaatagttgtgttgctgtttcttggttat  22963800
                                           <---------WRKY38(1)
                                       --------->LBD16
                                     ------>ZmHOX2a(2)
                                     <---------LBD16
                                    <------ZmHOX2a(2)
                                   --------->ARR14(2)
                                 ----------->ARR10<---------TOE1(3)                          -------
              <---------------AGL15<---------ARR14(2)                                        -------
            <-----------GT1      <------MYB46(1)  <---------TOE2(3)                          <------
         --------->GLK1(1)       <------MYB83     <---------YAB1                             <------
         <---------GLK1(1)     <--------P<-----------HVH21---------->DOF2                --------->ANAC46
   --------->MYB52(1)    --------->MYB52(1)<---------WRKY12                        --------->YAB1
 
tgtcccaaacggatttcacattagaagaaaacgggttggatccgggtcaacttaagattacaaaagtctaaatgggtttcagacactcatacacaaaatc  22963900
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AGI:  At1g62110.1   
Description:  mitochondrial transcription termination factor family protein / mTERF family protein. similar to mitochondrial transcription termination factor family protein / mTERF family protein [Arabidopsis thaliana] (TAIR:AT1G62085.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40592.1); contains InterPro domain Mitochodrial transcription termination factor-related (InterPro:IPR003690)
Range:  from: 22961541    to: 22963376    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At1g62120.1   
Description:  mitochondrial transcription termination factor-related / mTERF-related. similar to mitochondrial transcription termination factor family protein / mTERF family protein [Arabidopsis thaliana] (TAIR:AT1G62085.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40592.1); contains InterPro domain Mitochodrial transcription termination factor-related (InterPro:IPR003690)
Range:  from: 22963856    to: 22965444    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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