Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      ------>NtERF2                                                                                    --------->LBD16                                                                                   --------->ANAC58                                                                                   --------->ANAC46                                                                              <---------ZAT2                                                                              <---------HSFC1(2)                                                                              --------->HSFC1(2)                                                                              <---------HSFB2a(1)                                                                              --------->HSFB2a(1)                      <---------ANAC58                                        --------->ZAT2                      <---------ANAC58                                       --------->ANAC58                ------->GAMYB                             <-------TEIL   --------->ANAC58               --------->MYB46(3)  --------->TOE2(3)   --------->At4g35610   --------->ANAC58              --------->ANAC58 <---------ARR14(2)      <---------At4g35610--------->LBD16              --------->ANAC58 --------->ARR14(2)      --------->ZAT2    --------->ANAC58          --------->ANAC58    --------->At4g35610      <---------ZAT2    --------->ANAC46          --------->AtLEC2    <---------At4g35610     <---------TOE1(2) <---------LBD16          --------->ANAC58 --------->LBD16      <---------ANAC58      --------->ANAC46     ------->TEIL --->DOF2 --------->ANAC46<---------ANAC46      <---------ANAC58------>ZmHOX2a(1)  --------->ANAC58<-   gcggagaggcccatgcaaccaaggccttgcgcagatacctcaaggccttggcttcccagcttcatccttctcactccgcaagcttccgccatgaatctct  22360300                                                                                            <--------                                                                                    <---------MYB46(3)                                                                                 <---------MYB46(3)                                                                                 <------MYB46(1)                                    ----------->HVH21                           <---------AtMYB61                                  <---------bZIP60(2)             <---------ZAT18<------MYB83                                  --------->At4g35610     <---------AHL20(2) <---------MYB46(3)                                  ----------->GT1         --------->AHL20(2) <-----------RAV1(1) ----------HVH21           <---------------AGL15        ------->TEIL   <---------MYB46(3)<---------AtMYB61   ctgtcacaactatctctgtctcttcacttctctatgaggtgactcttgtagagctatgaattttttagtggagttgttgttgttggtggtgatggtgtga  22360400                                                                    <---------LBD16                                         <------MYB46(1)           --------->ETT(1)                                         <------MYB83 --------->TGA1a                          <-----                          *TSS          --------->MYB59            <---------LBD16         --------->AHL20(2)                      --------->ALFIN1  --------->MYB46(2)         <---------DEAR3(1)      <---------AHL20(2)                      <---------AtMYB61 --------->MYB111(2)      <-----------HVH21        --------->AHL20(2)                     --------->REM1(2)  <---------MYB46(3)      <------MYB46(1)         --------->YAB1                    --------->ALFIN1    --------->MYB111(1)     <------MYB83           --------->ICU4                    <---------MYB52(1) =========================MYC_MYB----------->GT1 <---------YAB1                  <---------ANAC58     <---------MYB55(1)      --------->MYB59       --------->YAB1              --------->DAG2 ===================================bZIP_DOF        --------->AHL20(2)   <---------YAB1 <---------ANAC46     <--------P     <---------TGA1a<------NtERF2 --------->AHL20(2)   --------->ICU4 <---------ANAC58    <---------MYB52(1)       <---------AtMYB61<---------AHL20(2) -ANAC46     ---------->DOF2 <----------DOF2<-------TEIL  <---------YAB1        --------->AHL20(1)   atgtgatgatgaagaaaaagccgtgtggtcgcttttgtctggttggtacatgtctcacttgtgatttggtcgggggaaaaaataaaataataataaataa  22360500                                                                                                    <                                                                                                    <                                                                                                   <-                                                                                                   --                                                                                        ------>ZmHOX2a(1)                                                                                       --------->TOE2(3)                                                             --------->ARR14(2)     --------->ARR14(2)                                                   ---------->DOF2                  <---------ARR14(2)      --------->TGA1a                            --------->ANAC58                  <---------GLK1(1)<      <---------TGA1a                            --------->ANAC58                  <---------CCA1(2)< ------GT1                           --------->AHL20(2)      <---------ARR14(2)    --------->GLK1(1)<   catgtctcacttgtgagaaactataaacctccaaaaaaaaaaaattcaagaacgaaagagaaggaaccgatacaattagtcgcacatatccttcatagag  22360600  ----------->TGA1  ----------->HVH21                                                                               --- ---------ANAC46                                   <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <----------DOF2 ---------ANAC58                                 <---------TOE2(3)                    xxxxxxxxxxxxxxx --------MYB46(3)                       <------MYB83                   --------->ARR11(3)       <---- ------->MYB55(2)                       <------MYB46(1)                <---------ARR11(3)     <xxxxxx ------MYB46(1)           <---------TOE2(3)    <---------AHL20(2)  xxxxxxxxxxxxxxxx>smallRNA(i) ----- ------MYB83             <-----------GT1----------->GT1         <---------ZAT6      --------->ARR11(3) ---------ANAC58   <----------DOF2     --------->MYB59    --------->ZAT6            <---------ARR11(3)   ttgggtgacgatatagatagtcttttttgacgatatagagttgggttatttaagtttgtatcagtagtctaaacatcttagaagcaggtctttttgggat  22360700                                 --------->ARR14(2)                               <---------SPL7                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                  ===================================HOX2a_HOX2a                  ------>ZmHOX2a(2)                 ====================================HOX2a_HOX2a                 <------ZmHOX2a(2)                <---------GLK1(2)<---------ARR14(2)                <---------ARR11(3)                          <------NtERF2                --------->ARR11(3)                        <---------DEAR3(1)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <---------ANAC46             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)         <---------ANAC58             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        <---------ANAC58           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)          <---------LBD16           <-----------HVH21  <---------ANAC46       <----------DOF2       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        xxxxxxxxxxxxxxxx>smallRNA(s)     ------>ZmHOX2a(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->LBD16     ===================HOX2a_HOX2a          --------->TOE2(3)                                     --     ====================HOX2a_HOX2a         <---------ANAC46                                      <-   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)      xxxxxxxxxxxxxxxx>smallRNA(s)                         <--- ------>ALFIN1  --------->ARR14(2)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                    xxxx x>smallRNA(i)  <---------ARR14(2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                        <------NtERF2 -----bZIP60(2) --------->AGP1<---------ANAC58    <---------ARR11(3)                         -------- xxxxxxxxxxxxxxsmallRNA(fl3)  <---------ANAC58------>ZmHOX2a(1)         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) ---->ALFIN1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --------->ARR11(3)----------->GT1         <--------   gtggctccttccccatcagatccttggtcttggcgtatgctcttgttccttagacctttggcggagcaatttgttaaatgcaacttgggtaatggccgca  22360800                                                                                                    -                                                                                                    <                                                                                                    <           <---------AtLEC2                                                                         <           <---------ANAC58                                                                        <-        --------->HSFB2a(2)                                            <------ZmHOX2a(2)           --  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <---------ZAT18                             <---------TOE1(3)        <---------ARR11(3)        <xxxx --------->ZAT18        <xxxxxxxxxxxxxxxxsmallRNA(i)              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ------->At4g35610>>>>>>>>>TAC1              <---------TOE2(3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------At4g35610<-------GAMYB            ---------->DOF2 <---------ICU4                       <xxxx ------CCA1(2)------------>AtMYB77   <---------At4g35610  --------->ICU4              xxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxx>smallRNA(fl3)     --------->At4g35610  <---------YAB1          <xxxxxxxxxxxxxxxxxx ->RAP2.6(2) ----------->HVH21       <------NtERF2   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)   --------->ZAT6 -RAP2.6(2)<---------ANAC58   <---------MYB52(1)   <---------ANAC46  <---------At4g35610<xxxxxxxxxxxx   tagctcacttctggcatgacagttggacttcccttggcccgctgataaaggttatgggtgattatggctccagatcacttcgcatccctcttaacgctag  22360900 <-------GAMYB                        <----------DOF2           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) -------->MYB55(2)            <---------HSFC1(2)            --------->ANAC58 ------MYB46(1)               --------->HSFB2a(1)           --------->ANAC58                    <---- ---------MYB46(3)            --------->HSFC1(2)            --------->ANAC46              <---------ALFIN1 ------MYB83                  <---------HSFB2a(1)      <---------At4g35610          --------->YAB1  - --------AtMYB61              --------->ZAT2           --------->ZAT2               --------->AtMYB61 ------->ALFIN1 <-------GAMYB <---------At4g35610      <---------ZAT2              <xxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <---------DAG2    --------->At4g35610 <xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <---------ALFIN1   <---------ALFIN1    <---------ALFIN1--------->ANAC58 xxxxxxx>smallRNA(s2)         --------->At4g35610--------->At4g35610  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxsmallRNA(se3)     <---------ANAC46         <---------At4g35610  <---------WRKY18(1)--------->ANAC58 xxxxxxxxxxxsmallRNA(se3)     <---------ZAT2    <---------ATERF1(1)  ----------->HVH21   --------->ANAC46   ggtggttgaggctcttggggttaatggctggaagctccccctttctcggtctgctccagctcaagccatccatgaccacatctctaccatcacgaccccc  22361000                                    <---------MYB46(3)                                    <------MYB83                                   <---------AtMYB61                                 <-------GAMYB                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                <---------AtMYB61                                --------->MYB111(1)                                --------->MYB111(2)                                --------->MYB52(2)                                --------->MYB55(2)                                <---------MYB46(3)                               <--------P            <---------TOE2(3)       --------->REM1(1)      <-------GAMYB   <---------ANAC58                                     <X       <---------YAB1     <---------WOX13(1)  <---------ANAC58       --------->ANAC58              <-  ------>ZmHOX2a(1)     --------->ATHB12 <---------ANAC46            --------->ANAC58             --- -----ALFIN1           <---------YAB1 <---------AtMYB61          --------->HSFB2a(2)            <---- ---------->RAV1(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)       <---------HSFB2a(2)            ----- xxxxxxsmallRNA(se3) <----------DOF2<------MYB46(1)  <---------TOE1(3) <------ZmHOX2a(1)  <xxxxxxxxxx   tctcctgctacaattgaagactcctttgattgggttgttggtggtgttgtttgtcaaggtttctcttcggcaaggacttgggatgctattagaccaagag  22361100         xxxxxxxxxxxxxxxx>smallRNA(s)     xxxxxxxxxxxxxxxx>smallRNA(s)   --------->ARR14(2)   <---------ARR14(2)                 <---------At4g35610 --------->LBD16                     --------->ALFIN1 XXXXXXXXXXXXXXXXXXXMIR869.1        --------->ZAT18 --------LBD16             <------MYB46(1)                                                         -- ------>MYB52(1)           <------MYB83                                     --------->At4g35610   <-- -----ABI4(2)           <---------MYB52(1)                               <xxxxxxxxxxxxxxxxsmallRNA(i) ---->ZAT18           xxxxxxxxxxxxxxxx>smallRNA(s)              <-------MYC3<-------GAMYB  <xxxxxxxxx xxxxxxxxxxxxsmallRNA(si3)--------->MYB59     ------>ZmHOX2a(1) ------->MYC3<---------At4g35610 <----   caccggaattggactgggcaaaggctgtttggttcaagggtgctgttcctaagcatgccttcaacatgtggattagtcagttggatagactcccaactcg  22361200  Previous    Next  AGI:  At1g60710.1    Description:  ATB2; oxidoreductase. similar to aldo/keto reductase family protein [Arabidopsis thaliana] (TAIR:AT1G60730.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45271.1); contains InterPro domain Aldo/keto reductase; (InterPro:IPR001395) Range:  from: 22358418    to: 22360426    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g60720.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G33710.1); similar to putative AP endonuclease/reverse transcriptase [Brassica napus] (GB:AAM82604.1); contains InterPro domain RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706) Range:  from: 22360737    to: 22361606    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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