Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   --------->YAB1                              --------->WOX13(1)                            --------->AHL20(2)                                                     --           <-----------GT1----------->GT1                                <-------TEIL             <--  --------->MYB52(1)      <---------ANAC55(2)             --------->AHL20(2)                    ----- ---------MYB52(2)    --------->YAB1           <---------ATHB12    ---------->DOF2            <------   taactaacatatataactggccaaaaataagtaaatcagaactgtaccagtgattcaaaaaaaaatcaaaaaagcttcattcaagaagaagatgaaatca  21747200                                          --------->ABI4(1)                                          ------>NtERF2                                         --------->ANAC46                                         <---------ALFIN1                                         --------->DEAR3(1)                                  --------->TGA2(2)                                 <-----------HVH21                                 <-----------TGA1                                --------->ANAC55(1)                                --------->ANAC46                                --------->ANAC55(2)                                --------->ANAC58                                --------->ANAC58                                <---------ANAC55(2)                                ==============================MYC_MYB                                <---------TGA2(1)                                --------->TGA1a                                <---------O2                                --------->O2                                <---------TGA1a                                ==========================bZIP_DOF  <---------ARR14(2)            --------->bZIP60(1)           <---------ZAT18  --------->ARR14(2)            --------->bZIP60(2)    <---------MYB52(1) ------->YAB1                   <---------bZIP60(1)   <-------GAMYB -------ATHB12              <-----------HVH21       ---------->ID1                         <--------- ---->WOX13(1) <----------DOF2 <-----------STF1<----------DOF2--------->ZAT18      <---------ARR11(3) ---ATHB12     ===========================bZIP_DOF<-----------RAV1(1)          ---------->DOF2   atcagaactggttttcgatttatggagttgtgtcacgtcatcaccgcctcttttgtcgttgttttgcactaaatctgaaacaaaagatagtaagggacga  21747300                    ------>ZmHOX2a(2)                   --------->GLK1(1)                   <------ZmHOX2a(2)                  <---------AGP1                  --------->ARR14(2)                  <---------ARR14(2)                  <---------ARR11(3)                  --------->AGP1             ----------->RAV1(1)            --------->REM1(1)         ------>ZmHOX2a(2)        --------->CCA1(2)        <------ZmHOX2a(2)       --------->ARR14(2)       <---------ARR11(3)       --------->ARR11(3)       <---------ARR14(2)                                         <-----------GT1                ----       <---------AGP1                                         <---------CCA1(1)        <---------YAB1       --------->AGP1        <----------DOF2                  <---------RVE1(1)        <---------AHL20(2) --------->GLK1(1)<-----------ARR10                          <---------ARR11(3)      --------->YAB1 <---------GLK1(1)--------->ARR11(3)                         --------->ARR11(3)     <---------AHL20(2) -ID1 <---------CCA1(2) ---------->ID1                  ------->TEIL                --------->AHL20(2)   gggagttcagatctacaacagatctcgtcgtctttagaaacacaatttcgctcatatgaatcagatatttacaaaattcaacaaaatttataattttgtt  21747400                                                            ----------->GT1                                                          ---------->DOF2                                                       <---------ANAC46                       --------->ANAC46                ----------->GT1                    ------>MYB46(1)              <---------LBD16                    ------>MYB83 --------->ARR11(3)    <---------REM1(1)       <---------ICU4                  --------->AtMYB61         --------->ARR14(2)      --------->ANAC58         <------ZmHOX2a(1)       --------->GLK1(2)  <---------MYB52(1)         --------->YAB1       <---------TOE2(3)     --------->YAB1 <---------ARR14(2)      --------->ANAC58 ------->GT1 <---------MYB52(2)  <---------ARR11(3)--------->LBD16---------->DOF2             <------   cgtaaaattgaggaaacaaacctacacaaaatcaaaatctagagaggtttctccgtgatgtaaagtacaaaagctacacaatcttcacaaactccattgt  21747500                                               <----------ID1                                               ----------->GT1                 --------->TOE1(3)        --------->ANAC58                --------->ANAC58           ---------->DOF2        --------->DAG2        --------->ANAC46             <---------ZAT2      --------->DAG2   --------->CCA1(2)        --------->ANAC58   <---------ALFIN1  ----------->GT1     --------->ARR11(3)      ---------->DOF2      <---------ALFIN1   <---------ALFIN1  ---------->DOF2----------->GT1--------->ARR14(2)         <     --------->ANAC46   --------->ANAC46--------->ANAC58---------->DOF2  <---------ARR14(2)        <- -----RAV1(1)         <-----------GT1--------->ZAT2     *TSS ---------->DOF2   --------->TOE2(3) ----   tgctctcaccacacaaactctatatcaccacacatactcagcaaggaaagagaaaaaaaaaagtaaagataaagagatttgccttaaaaaaaaaagtgat  21747600                                                                        <-----------HVH21                                                                       --------->ANAC46                                                                       --------->ANAC58                                                                       --------->ANAC55(2)                                                                      --------->SPL7                                                                    <---------SPL7                                                                   --------->ANAC58                                                                   --------->ANAC58                                                                   ==================================                                                                   --------->ANAC55(2)                                                                   <---------ANAC55(2)      ------>ZmHOX2a(2)                                           --------------->AtSPL3     <------ZmHOX2a(2)                                       --------->AtMYB61    <---------ARR11(3)                                      --------->MYB46(3)    --------->ARR14(2)                                      <---------MYB55(2)    <---------ARR14(2)                                      <---------ATHB12<---------ANAC55(2)    --------->AGP1                                         ------>MYB83--------->ANAC58    <-----------ARR10                                      ------>MYB46(1)  --------->ANAC55(2)    --------->ARR11(3)                                     ==================MYC_MYB            -----    <---------AGP1                               --------->AHL20(2)==================================   <---------CCA1(2)                     <-----------GT1   -------->P <-------TEIL              -----  ----------->ARR10                 --------->AHL20(2)<-----------GT1 ------->TEIL              <---- ------ZmHOX2a(2)                 ----------->GT1--------->AHL20(1)<---------TGA1a             ------ ----------HVH21                ---------->DOF2  <---------AHL20(2)--------->TGA1a             <----- -->ZmHOX2a(2)--------->ARR11(3)=============================================bZIP_DOF          ------   cgatcagatcttaatagaacttccatcgctgagaaaaagaaaataactaaattttttatccaaccactcacgtacgtcacatatttgtttgtttgtaacc  21747700    --------->GLK1(2)                                                      xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------GLK1(2)                                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->ANAC58                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --------->ANAC58                               --------->At5g28300     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ===MYC_MYB                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) -->GAMYB                             <---------YAB1    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) =======MYC_MYB                    <---------YAB1     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)<----------DOF2 ---->DREB2C(2)             <----------DOF2 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  --------->DAG2 -----ETT(1)             <-----------GT1 <-----------HVH21             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --->DEAR3(2)            <---------ARR11(3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  ---------->DOF2   - -------AtMYB77          --------->ARR11(3)<-----------RAV1(2)         ---------->DOF2   <---------DAG2 --->MYB46(3)  ---------->DOF2  <-----------GT1----------->GT1         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   gacaagaatctaaattcaaaagcttattatcttttttcttattagtcaggggtaaaatggtctcaatttcactaaaagaattagaaaagtgccttttccc  21747800                                                                                 <---------AHL20(2)                                     <---------------AGL15                      --------->AHL20(2)                                   <---------ZAT14                              --------->YAB1-------                                   --------->ZAT18                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                   <---------ZAT18                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                           <----------DOF2                     <-----------GT1 <---------YAB1<-------                          --------->TOE2(3)                  <---------AHL20(2)xxxxxxxxxxxxxxxxxxxxxx             ----------->GT1  ---------->DOF2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <-----------RAV1(1)            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  xxxxxxxxxxxxx      ----------->GT1 <----------DOF2========================================================MADS_MADS  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     ------->TEIL --------->DOF2    <-----------GT1 --------->ZAT14      <---------MYB52(1)   <---------------AGL15   tctaaagtgtgtaaaacgtataaactttcctttaaagtgctctattatgcaactctcccttattttaactgctaatatactattatatgtatgttgtatc  21747900                     --------->AHL20(2)                    <---------AHL20(2)               <---------AHL20(2)               <---------ARR11(3)               --------->AHL20(2)                                                         <------NtERF2               --------->AHL20(1)                                                        ----------->GT1               --------->ARR11(3)                                                        --------->LBD16               <---------AHL20(1)                                                        <------NtERF2              --------->AHL20(2)                                                  <---------ANAC58          <---------YAB1                                                          <---------ANAC58      <---------ANAC58                              <---------AHL20(2)        ------>ZmHOX2a(1)      <---------ANAC58                 ------>ZmHOX2a(1)                  <---------ARR14(2) >TEIL<---------ANAC46<---------AHL20(2)      <---------ANAC55(2)         --------->ARR14(2) --CCA1(2)--------->AHL20(2)    --------->AHL20(2)--------->AHL20(2) <-----------HVH21  --------->RAP2.6(2) x>smallRNA(le3)<---------AHL20(2)   <---------ANAC46        ----------->GT1  <----------DOF2 xxxxxxxxxx>smallRNA(si3)       <---------AHL20(2)<---------AHL20(2)----------->GT1    <---------LBD16   tataatttgcttataaatatattttaaattgtatttatttcctgtattacatataaatttgatgggaaaaatgtcaaatccttttcttggccggaaatat  21748000                                                                         --------->HSFB2a(1)                                                                         <---------HSFB2a(1)                                                                         --------->HSFC1(2)                      ----------->GT1                                <<<<<<<<<<E2Fb                      --------->TOE2(3)                              <------NtERF2                     ----------->GT1                                 ----------->GT1                <xxxxxxxxxxxxxxxxsmallRNA(s)                        --------->LBD16               <------NtERF2                                       <---------ANAC46               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)               <---------ANAC58              --------->LBD16                                      >>>>>>>>>>E2Fa             <---------ANAC58                                      <---------ANAC58             >>>>>>>>>>E2Fa                                       <---------LBD16             <---------ANAC58        <---------AtMYB61            <<<<<<<<<E2Fd             <---------ANAC46  <---------ANAC46                   <<<<<<<<<E2Fc            <---------LBD16    <---------ANAC58             <---------YAB1            <<<<<<<<<E2Fd      <---------ANAC58          <---------YAB1  <---------HSFC1(2) >>>>>>>>>WRKY18            <<<<<<<<<E2Fc<---------AHL20(2)             --------->ARR11(3)           <---------ANAC46           xxxxxxxxxxxxxxxx>smallRNA(i)          <xxxxxxxxxxxxxxxxsmallRNA(s)        <---------ANAC58          xxxxxxxxxxxxxxxx>smallRNA(i)   ----------->GT1<---------ARR11(3)           <---------ANAC58   tgaatattgtttttggcgggaaaatgttaaattgcgtttttggtggaaaaatgttgaatatcatttttggcgggaaatttctaaattgcgtttttgacag  21748100  Previous    Next  AGI:  At1g58590.1    Description:  other RNA Range:  from: 21746824    to: 21747556    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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