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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
WOX13(1)
--------->
ATHB12
-----
---------->
DOF2
-------->
HAHB4
-------
------>
NtERF2
<---------
YAB1
---------->
DOF2
<----------
ID1
--------->
ICU4
<---------
ANAC58
---------->
DOF2
<---------
PCF2
<---------
ATHB12
<---------
ANAC58
tgtctatggaaagtgactcttcatctatggggccaaaagaagagactaagaaacacaagagaaatgattgtttcaaattccatttgctagtcaaaagaaa
19853300
--------->
ATHB12
--------->
ICU4
<--------
------->
GAMYB
<---------
ATHB12
<---------
REM1(1)
------>
ZmHOX2a(1)
----------->
RAV1(1)
--------->
ANAC46
<---------
YAB1
--------->
ZAT18
--------->
MYB46(3)
--------->
ANAC58
--------->
YAB1
<---------
ZAT18
<-----------
GT1
<---------
ARR11(3)
------>
MYB83
<---------
WOX13(1)
--------->
ZAT14
<-
------>
GT1
--------->
ARR11(3)
------>
MYB46(1)
<---------
TOE2(3)
-------------
--->
DOF2
----------->
GT1
--------->
ANAC58
<---------
YAB1
<---------
ZAT14
---
gtttataaccacagagattgggaagataatacttctaataaacgctaaaccaaacaatatgatgattgatgtagatggatagagcactgttcctctttgg
19853400
--------->
ANAC58
--------->
ANAC58
---------->
DOF2
<---------
LBD16
<---------
CCA1(1)
<---------
TOE1(3)
--------->
ANAC58
<---------
ANAC46
<---------
TOE2(3)
--------->
ANAC58
<---------
ANAC58
---------->
DOF2
---------->
DOF2
--
DOF2
--------->
YAB1
<---------
ANAC58
--------->
DAG2
<-------
GAMYB
--------
WOX13(1)
<---------
RVE1(1)
---------->
DOF2
<----------
DOF2
----------->
GT1
---->
AGL1
<---------
ARR11(3)
------->
MYC3
--------->
ANAC58
<---------
ANAC46
------>
ARR14(2)
--------->
ARR11(3)
<-------
MYC3
--------->
ANAC58
--------->
ALFIN1
--
gattggcaaacaaaatgagatatttcttggggaaagcattaaacccacatggaat
aaagggcaaacaaaagactttagcttcaagtggggttaaaggttt
19853500
--------->
ANAC58
--------->
ANAC58
--------->
ANAC55(1)
------->
GAMYB
<---------
ANAC55(2)
<---------
MYB52(2)
------->
TEIL
--------->
ANAC55(2)
--------->
MYB46(3)
<---------
REM1(1)
<------
ZmHOX2a(1)
--------->
REM1(1)
--------->
At4g35610
---------->
DOF2
--------->
ANAC58
<---------
At4g35610
----------->
GT1
--------->
MYB52(1)
----------->
GT1
--------->
CCA1(2)
<---------
ICU4
--------->
RAV1(1)
<----------
ID1
--------->
ANAC58
<---------
ARR11(3)
<---------
ZAT6
ccaacacaagaacataaataaaggacaagtaattgtagaacaagttacaacaaacaagatgtgagctcatgtagctagagctaaacattgtaaaacagaa
19853600
<---------
WOX13(1)
<------------
CBF
--------->
KAN4(2)
<---------
HSFC1(2)
--------->
HSFB2a(1)
<---------
HSFB2a(1)
--------->
TOE1(3)
--------->
HSFC1(2)
----------->
RAV1(2)
--------->
KAN4(1)
--------->
GLK1(2)
<---------
KAN4(1)
---------->
DOF2
------->
TEIL
--------->
HSFB2a(2)
<-----------
TBP
--------->
ARR11(3)
<---------
HSFB2a(2)
--------->
MYB46(3)
<---------
ARR14(2)
*
TSS
--------->
MYB52(1)
<-----------
GT1
<----------
DOF2
--------->
ARR14(2)
<--
ttgaacttacagaacgttctctaattgatacaagatgaattcaaattaaccaaggcctaggcttttaaagacttaagaagaacctgaaactgttgatc
ag
19853700
--------->
ANAC58
--------->
ANAC46
--------->
TOE1(3)
--------->
KAN4(2)
--------->
RAP2.6(2)
--------->
ZAT18
<----------
TaMYB80
--------->
DEAR3(1)
--------->
DEAR3(1)
<---------
GLK1(1)
------->
GAMYB
--------->
ANAC58
--------->
TOE2(3)
--------->
ARR14(2)
---------->
DOF2
--------->
ANAC46
----------->
GT1
--------->
ANAC46
--------->
ANAC58
--------->
ANAC58
----------->
GT1
---------
TBP
<---------
ARR14(2)
------->
GAMYB
<---------
LBD16
----------->
HVH21
<-
atttataggccatttggatattcgaaacacacaacaacgaaaaccgccttcactattccacgcattcgaagcgcc
ctgaaacgttaaaaacaat
gtaagt
19853800
<-------
GAMYB
---------->
DOF2
<----------
ID1
--------->
ALFIN1
<---------
YAB1
---------->
DOF2
<---------
ANAC58
--------->
TOE1(2)
<---------
YAB1
<---------
ANAC58
<---------
LBD16
<---------
--------
YAB1
----------->
GT1
<----------
DOF2
----------->
RAV1(2)
<---------
ANAC46
tatcaatttgatgaatggttaaaagacaagactttcacaaatgggtgttgttttcgaaaaacttcaaac
ctggaatatgaaaagaaacctgttgtgttgc
19853900
<---------
ANAC46
<---------
ANAC58
<---------
ANAC58
--------->
DEAR3(1)
<------
NtERF2
--------->
ATERF1(1)
------>
NtERF2
--------->
RRTF1(3)
--------->
RAP2.3(2)
--------->
RAP2.3(3)
--------->
ANAC46
--------->
RRTF1(1)
--------->
ERF1
--------->
ATERF1(1)
<------
NtERF2
--------->
DEAR4(2)
--------->
ORA47(2)
--------->
RAP2.3(1)
--------->
RAP2.6(1)
------>
NtERF2
<---------
ATERF1(1)
<---------
RRTF1(1)
<---------
RAP2.3(1)
<-----------
HVH21
<-----------
RAV1(1)
<----------
DOF2
<---------
ANAC46
<---------
ANAC58
--------->
GLK1(2)
<---------
ANAC58
--------->
ARR14(2)
<---------
DEAR3(1)
<---------
ANAC46
--------->
RAP2.6(3)
<---------
ANAC58
----------->
HVH21
<---------
DEAR3(1)
<---------
ANAC58
--------->
At4g35610
--------->
DEAR3(1)
<<<<<<<<<
ARR1
<---------
AHL20(2)
<---------
At4g35610
<---------
DEAR3(1)
-
<<<<<<<<<
ARR2
--------->
HSFB2a(2)
<---------
ARR14(2)
<---------
RAP2.6(2)
------>
ZmHOX2a(1)
<
--
RAV1(1)
<---------
HSFB2a(2)
<---------
GLK1(2)
<------
ZmHOX2a(1)
--------->
ABI4(1)
--
acaatcttatgtgtttttggaacttgt
ttaatggcgagaatcggatgaagcag
aggacggcttgttgtcgccgccgtgctcctcttgttcgccttgaaac
19854000
--------->
LBD16
<---------
LBD16
--------->
LBD16
<---------
LBD16
-----
<---------------
AGL15
--------->
TOE1(2)
<----
<---------
ARR14(2)
<---------
ARR14(2)
-------
--------->
ARR14(2)
--------->
ARR14(2)
--------
--------->
ANAC46
--------------->
AGL15
<------
MYB46(1)
<------
MYB83
--------->
ANAC58
<---------
ALFIN1
<------
MYB83
<------
MYB46(1)
--------->
ANAC58
<-----------
GT1
<---------
WOX13(1)
<--------
P
-------->
ZAT2
--------->
LBD16
<---------
ARR14(2)
--------->
CCA1(2)
---------
ZAT2
--------->
MYB52(1)
--------->
ARR14(2)
--------->
ARR14(2)
<
------->
ALFIN1
<---------
LBD16
---------->
DOF2
<---------
LBD16
----------->
GT1
<---------
ARR14(2)
<-
cgtgctggtatacgaaaaccggagaattcaccacttgaagcaaatgcaatgcctggaatagcagattggtgaatcccgggagggatatggtagggatgat
19854100
--------->
ICU4
<---------
YAB1
--------->
YAB1
--------->
ICU4
<---------
YAB1
------>
ZmHOX2a(2)
--------->
YAB1
--------->
ARR11(3)
--------->
ICU4
<---------
ARR11(3)
--------->
YAB1
<---------
ARR14(2)
<---------
YAB1
--------->
ANAC58
-
<---------
GLK1(1)
--------->
YAB1
--------->
ANAC58
-
<---------
ANAC46
--------->
ICU4
--------->
ANAC58
<-
---->
ICU4
<---------
YAB1
------>
MYB83
<-
-----
YAB1
<-----------
HVH21
<---------
At4g35610
------>
MYB46(1)
<-------
-->
YAB1
<------
ZmHOX2a(2)
--------->
At4g35610
--------->
ANAC58
---------
->
ICU4
--------->
ARR14(2)
<---------
At4g35610
<------
ZmHOX2a(2)
--------->
YAB1
XXXXXXXXXXX
---------
MYB46(3)
--------->
WRKY18(1)
<---------
YAB1
<-----------
ARR10
--------->
ATHB12
XXXXXXXXXXXX
--------
AtMYB61
<-----------
HVH21
--------->
ICU4
<------
ZmHOX2a(1)
<---------
ATHB12
XXXXXXXXXXXX
gatggtggagatcgtcagtggtcatggactgctgatgatgatgatgatgatggtgaggatcaaaccaagcacgaatcataggtgtgttaatggactgaag
19854200
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AGI:
At1g53230.1
Description:
TCP3 (TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 3); transcription factor. similar to TCP4 (TCP FAMILY TRANSCRIPTION FACTOR 4), transcription factor [Arabidopsis thaliana] (TAIR:AT3G15030.2); similar to TCP4 (TCP FAMILY TRANSCRIPTION FACTOR 4), transcription factor [Arabidopsis thaliana] (TAIR:AT3G15030.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39371.1); contains InterPro domain Transcription factor, TCP (InterPro:IPR005333)
Range:
from: 19853456
to: 19855393
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At1g53233.1
Description:
other RNA
Range:
from: 19853699
to: 19855795
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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