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AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                               <---------WOX13(1)
                                                             --------->ATHB12                  -----
                               ---------->DOF2               -------->HAHB4                  -------
                           ------>NtERF2                    <---------YAB1               ---------->DOF2
                          <----------ID1                    --------->ICU4        <---------ANAC58
     ---------->DOF2      <---------PCF2                    <---------ATHB12      <---------ANAC58
 
tgtctatggaaagtgactcttcatctatggggccaaaagaagagactaagaaacacaagagaaatgattgtttcaaattccatttgctagtcaaaagaaa  19853300
                                                           --------->ATHB12
                                                          --------->ICU4                   <--------
     ------->GAMYB                               <---------ATHB12<---------REM1(1)       ------>ZmHOX2a(1)
     ----------->RAV1(1)              --------->ANAC46    <---------YAB1       --------->ZAT18
    --------->MYB46(3)                --------->ANAC58  --------->YAB1         <---------ZAT18
  <-----------GT1    <---------ARR11(3)         ------>MYB83 <---------WOX13(1)--------->ZAT14    <-
------>GT1           --------->ARR11(3)         ------>MYB46(1) <---------TOE2(3)      -------------
--->DOF2           ----------->GT1    --------->ANAC58 <---------YAB1          <---------ZAT14   ---
 
gtttataaccacagagattgggaagataatacttctaataaacgctaaaccaaacaatatgatgattgatgtagatggatagagcactgttcctctttgg  19853400
                              --------->ANAC58
                              --------->ANAC58
                            ---------->DOF2
                        <---------LBD16
                <---------CCA1(1)                                                         <---------TOE1(3)
    --------->ANAC58 <---------ANAC46                                                     <---------TOE2(3)
    --------->ANAC58 <---------ANAC58                          ---------->DOF2          ---------->DOF2
--DOF2--------->YAB1 <---------ANAC58               --------->DAG2                   <-------GAMYB
--------WOX13(1)<---------RVE1(1)                  ---------->DOF2   <----------DOF2----------->GT1
---->AGL1      <---------ARR11(3)           ------->MYC3   --------->ANAC58         <---------ANAC46
------>ARR14(2)--------->ARR11(3)           <-------MYC3   --------->ANAC58      --------->ALFIN1 --
 
gattggcaaacaaaatgagatatttcttggggaaagcattaaacccacatggaataaagggcaaacaaaagactttagcttcaagtggggttaaaggttt  19853500
                       --------->ANAC58
                       --------->ANAC58
                       --------->ANAC55(1)     ------->GAMYB
                       <---------ANAC55(2)    <---------MYB52(2)    ------->TEIL
                       --------->ANAC55(2)    --------->MYB46(3) <---------REM1(1)
                   <------ZmHOX2a(1)       --------->REM1(1)--------->At4g35610
               ---------->DOF2        --------->ANAC58      <---------At4g35610     ----------->GT1
               --------->MYB52(1)     ----------->GT1  --------->CCA1(2)         <---------ICU4
--------->RAV1(1) <----------ID1      --------->ANAC58<---------ARR11(3)  <---------ZAT6
 
ccaacacaagaacataaataaaggacaagtaattgtagaacaagttacaacaaacaagatgtgagctcatgtagctagagctaaacattgtaaaacagaa  19853600
                    <---------WOX13(1)
                   <------------CBF
           --------->KAN4(2)
          <---------HSFC1(2)
          --------->HSFB2a(1)
          <---------HSFB2a(1)                                                  --------->TOE1(3)
          --------->HSFC1(2)                                                  ----------->RAV1(2)
          --------->KAN4(1)                                                  --------->GLK1(2)
          <---------KAN4(1)                                   ---------->DOF2------->TEIL
     --------->HSFB2a(2)                                   <-----------TBP  --------->ARR11(3)
     <---------HSFB2a(2)                     --------->MYB46(3)             <---------ARR14(2)    *TSS
   --------->MYB52(1)                      <-----------GT1<----------DOF2   --------->ARR14(2)   <--
 
ttgaacttacagaacgttctctaattgatacaagatgaattcaaattaaccaaggcctaggcttttaaagacttaagaagaacctgaaactgttgatcag  19853700
                         --------->ANAC58
                         --------->ANAC46                                     --------->TOE1(3)
               --------->KAN4(2)        --------->RAP2.6(2)         --------->ZAT18
              <----------TaMYB80        --------->DEAR3(1)         --------->DEAR3(1)
              <---------GLK1(1)         ------->GAMYB   --------->ANAC58      --------->TOE2(3)
             --------->ARR14(2)     ---------->DOF2     --------->ANAC46      ----------->GT1
   --------->ANAC46      --------->ANAC58               --------->ANAC58     ----------->GT1
---------TBP <---------ARR14(2)   ------->GAMYB        <---------LBD16  ----------->HVH21         <-
 
atttataggccatttggatattcgaaacacacaacaacgaaaaccgccttcactattccacgcattcgaagcgccctgaaacgttaaaaacaatgtaagt  19853800
                                          <-------GAMYB                     ---------->DOF2
                   <----------ID1        --------->ALFIN1                <---------YAB1
                 ---------->DOF2       <---------ANAC58          --------->TOE1(2)
       <---------YAB1                  <---------ANAC58          <---------LBD16          <---------
--------YAB1----------->GT1 <----------DOF2                     ----------->RAV1(2)     <---------ANAC46
 
tatcaatttgatgaatggttaaaagacaagactttcacaaatgggtgttgttttcgaaaaacttcaaacctggaatatgaaaagaaacctgttgtgttgc  19853900
                                                                      <---------ANAC46
                                                                      <---------ANAC58
                                                                      <---------ANAC58
                                                                      --------->DEAR3(1)
                                                                     <------NtERF2
                                                                     --------->ATERF1(1)
                                                                    ------>NtERF2
                                                                   --------->RRTF1(3)
                                                                   --------->RAP2.3(2)
                                                                   --------->RAP2.3(3)
                                                                   --------->ANAC46
                                                                  --------->RRTF1(1)
                                                                  --------->ERF1
                                                                  --------->ATERF1(1)
                                                                  <------NtERF2
                                                                  --------->DEAR4(2)
                                                                  --------->ORA47(2)
                                                                  --------->RAP2.3(1)
                                                                  --------->RAP2.6(1)
                                                                 ------>NtERF2
                                                                 <---------ATERF1(1)
                                                                 <---------RRTF1(1)
                                                                 <---------RAP2.3(1)
                                                              <-----------HVH21
                                                             <-----------RAV1(1)
                                                         <----------DOF2
                                                        <---------ANAC46
                                                        <---------ANAC58
                                   --------->GLK1(2)    <---------ANAC58
                                   --------->ARR14(2)<---------DEAR3(1)
                              <---------ANAC46      --------->RAP2.6(3)
                              <---------ANAC58    ----------->HVH21<---------DEAR3(1)
                              <---------ANAC58  --------->At4g35610--------->DEAR3(1)
<<<<<<<<<ARR1           <---------AHL20(2)   <---------At4g35610<---------DEAR3(1)                 -
<<<<<<<<<ARR2--------->HSFB2a(2)   <---------ARR14(2)<---------RAP2.6(2)      ------>ZmHOX2a(1)    <
--RAV1(1)    <---------HSFB2a(2)  <---------GLK1(2)<------ZmHOX2a(1)--------->ABI4(1)             --
 
acaatcttatgtgtttttggaacttgtttaatggcgagaatcggatgaagcagaggacggcttgttgtcgccgccgtgctcctcttgttcgccttgaaac  19854000
                                                                         --------->LBD16
                                                                        <---------LBD16
                                                                        --------->LBD16
                                                                       <---------LBD16         -----
                           <---------------AGL15                       --------->TOE1(2)       <----
                     <---------ARR14(2)                             <---------ARR14(2)       -------
                     --------->ARR14(2)                             --------->ARR14(2)      --------
        --------->ANAC46   --------------->AGL15               <------MYB46(1)          <------MYB83
        --------->ANAC58   <---------ALFIN1                    <------MYB83             <------MYB46(1)
        --------->ANAC58<-----------GT1                      <---------WOX13(1)       <--------P
-------->ZAT2   --------->LBD16                             <---------ARR14(2)   --------->CCA1(2)
---------ZAT2--------->MYB52(1)                             --------->ARR14(2)  --------->ARR14(2) <
------->ALFIN1<---------LBD16   ---------->DOF2 <---------LBD16----------->GT1  <---------ARR14(2)<-
 
cgtgctggtatacgaaaaccggagaattcaccacttgaagcaaatgcaatgcctggaatagcagattggtgaatcccgggagggatatggtagggatgat  19854100
                                           --------->ICU4
                                           <---------YAB1
                                         --------->YAB1
                                        --------->ICU4
                                        <---------YAB1
        ------>ZmHOX2a(2)             --------->YAB1
      --------->ARR11(3)             --------->ICU4
      <---------ARR11(3)           --------->YAB1
      <---------ARR14(2)          <---------YAB1                   --------->ANAC58                -
     <---------GLK1(1)          --------->YAB1                     --------->ANAC58                -
 <---------ANAC46              --------->ICU4                  --------->ANAC58                   <-
---->ICU4                      <---------YAB1                  ------>MYB83                       <-
-----YAB1<-----------HVH21   <---------At4g35610               ------>MYB46(1)              <-------
-->YAB1<------ZmHOX2a(2)  --------->At4g35610                  --------->ANAC58            ---------
->ICU4--------->ARR14(2)  <---------At4g35610          <------ZmHOX2a(2)--------->YAB1   XXXXXXXXXXX
---------MYB46(3)--------->WRKY18(1) <---------YAB1   <-----------ARR10 --------->ATHB12XXXXXXXXXXXX
--------AtMYB61 <-----------HVH21 --------->ICU4     <------ZmHOX2a(1) <---------ATHB12 XXXXXXXXXXXX
 
gatggtggagatcgtcagtggtcatggactgctgatgatgatgatgatgatggtgaggatcaaaccaagcacgaatcataggtgtgttaatggactgaag  19854200
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AGI:  At1g53230.1   
Description:  TCP3 (TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 3); transcription factor. similar to TCP4 (TCP FAMILY TRANSCRIPTION FACTOR 4), transcription factor [Arabidopsis thaliana] (TAIR:AT3G15030.2); similar to TCP4 (TCP FAMILY TRANSCRIPTION FACTOR 4), transcription factor [Arabidopsis thaliana] (TAIR:AT3G15030.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39371.1); contains InterPro domain Transcription factor, TCP (InterPro:IPR005333)
Range:  from: 19853456    to: 19855393    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At1g53233.1   
Description:  other RNA
Range:  from: 19853699    to: 19855795    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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