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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
ALFIN1
------->
MYC3
------->
PIF5
<-------
MYC3
<-------
MYC2
------->
MYC2
<-------
PIF5
--------->
TGA1a
=================================================
bZIP_DOF
--------->
ANAC55(2)
===================
bZIP_DOF
<---------
ANAC46
<---------
ANAC55(2)
==================================
bZIP_DOF
<---------
O2
<---------
TGA1a
--------->
O2
<---------
bZIP60(2)
<----------------
PIF3(2)
<-----------
HVH21
<---------
DEAR3(2)
--------->
DEAR3(1)
----------->
HVH21
<------
NtERF2
------>
MYB83
--------->
ATERF1(1)
------>
MYB46(1)
------>
NtERF2
<---------
MYB59
--------->
ANAC46
<---------
WRKY18(1)
<---------
TGA1a
<---------
ETT(2)
--------->
TGA1a
--------->
WRKY38(1)
--------->
ANAC58
--------------->
AtSPL8
--------->
ETT(2)
--------->
ANAC46
<----------
DOF2
--------->
WRKY12
<-----
--------->
ANAC58
------>
ZmHOX2a(1)
------>
ZmHOX2a(1)
------->
TEIL
-->
ARR10
----------->
HVH21
<----------
DOF2
<----------
DOF2
-------->
ZAP1
--------------->
AtSPL8
ctcacgcgccggtcacgtggtcctttcgctgtacatactttactatgtctgtcttttcttcctgttgaccgaacaatgtgacctccttgtacctccacaa
19855000
<---------
ANAC46
<------
NtERF2
--------->
ATERF1(1)
------>
NtERF2
--------->
DEAR3(1)
<---------
DEAR3(1)
----------->
HVH21
<---------
ALFIN1
--------->
ATERF1(1)
--------->
AtMYB61
<------
NtERF2
<---------
MYB55(2)
--------->
RAP2.3(1)
--------->
MYB46(3)
<---------
ATERF1(1)
------->
GAMYB
------>
NtERF2
--------->
AtMYB61
<---------
ERF1
--------->
MYB46(3)
<---------
DEAR4(2)
<---------
MYB55(2)
<---------
RAP2.3(1)
-------->
P
<---------
ORA47(2)
--------->
ANAC58
<---------
MYB46(3)
<---------
RAP2.6(2)
--------->
ANAC58
<------
MYB83
<---------
DEAR3(1)
<------
NtERF2
<------
MYB46(1)
--------->
ATERF1(2)
------>
NtERF2
<---------
MYB52(1)
<---------
AtMYB61
<---------
RAP2.3(3)
--------->
LBD16
<---------
MYB46(3)
<---------
RAP2.3(2)
<----
--------->
RAP2.3(2)
<---------
AtMYB61
<---------
ANAC46
------
--------->
RRTF1(2)
--------->
ATHB12
--------->
ATERF1(1)
--------->
DOF5.7(2)
--------->
ANAC46
<---------
At4g35610
<---------
ABI4(1)
<---------
MYB52(1)
--------->
DEAR3(1)
<---------
DEAR3(1)
<---------
HSFC1(1)
<-------
GAMYB
--------->
RAP2.6(2)
<-----------
HVH21
--------->
HSFB2a(2)
<-----------
ARR10
---------
--------->
RAP2.3(1)
--------->
ANAC46
<---------
CCA1(2)
<---------
ATERF1(1)
<---------
MYB46(3)
----
GLK1(2)
--------->
DEAR3(1)
<---------
WOX13(1)
<---------
HSFB2a(2)
--------->
GLK1(2)
<---------
tctcgccgcaaccaccaccgttctccgtcgctgattggtggtgtctcatctctagaagaggcggcgacggagaatctaagaaatggtcgttatctggtgc
19855100
<---------
RRTF1(1)
------>
NtERF2
<---------
ERF1
<---------
RAP2.3(1)
<---------
O2
<---------
RAP2.3(2)
<---------
DEAR3(1)
--------->
O2
<------
NtERF2
------>
NtERF2
<---------
ATERF1(1)
--------->
DEAR3(1)
<---------
DEAR3(1)
--------->
RAP2.3(1)
--------->
ATERF1(1)
<------
NtERF2
<---------
ATERF1(1)
<---------
RRTF1(1)
<---------
RAP2.6(1)
<---------
DEAR4(2)
------>
NtERF2
<---------
ERF1
<---------
ORA47(2)
<---------
RAP2.3(1)
<---------
RAP2.3(3)
<---------
RAP2.3(2)
--------->
ATERF1(2)
<---------
ATERF1(2)
--------->
DEAR3(1)
<------
NtERF2
<---------
ABI4(1)
--------->
At4g35610
--------->
ATERF1(1)
--------->
DREB2C(1)
<---------
At4g35610
<---------
DEAR4(2)
<---------
RAP2.3(1)
<---------
RRTF1(1)
<---------
ORA47(2)
<---------
ERF1
------>
NtERF2
<-------
GAMYB
<---------
RAP2.6(1)
<---------
ATERF1(1)
<---------
DREB2C(2)
<---------
RRTF1(2)
<---------
RAP2.3(2)
<---------
RRTF1(3)
<---------
RAP2.3(3)
<---------
RAP2.6(2)
<---------
DEAR3(1)
<---------
ABI4(1)
--------->
ATERF1(1)
<---------
ATERF1(1)
------>
NtERF2
<---------
DEAR3(2)
<---------
ERF1
<---------
MYB46(3)
<---------
RRTF1(2)
<---------
RAP2.3(3)
<---------
RRTF1(3)
<---------
DREB2C(2)
<------
MYB83
--------->
DEAR3(1)
<------
MYB46(1)
<---------
ANAC46
--------->
LBD16
<-------
GAMYB
<---------
RRTF1(1)
--------->
DEAR3(1)
--------->
MYB55(2)
--------->
RAP2.3(1)
--------->
DEAR3(2)
--------->
MYB111(2)
<---------
DEAR3(1)
--------->
MYB46(3)
<---------
MYB46(3)
--------->
DEAR4(2)
<------------
AtMYB77
<---------
MYB46(3)
<------
NtERF2
<---------
DEAR3(1)
---------
<---------
AtMYB61
<---------
RAP2.3(2)
<---------
At5g28300
<---------
DEAR3(1)
<---------
RAP2.3(1)
<---------
MYB52(1)
--------->
ALFIN1
<---------
DEAR3(1)
--------->
DOF5.7(2)
<---------
REM1(1)
<---------
MYB46(3)
<---------
RAP2.6(2)
<-------
GAMYB
<------
ZmHOX2a(1)
--------->
YAB1
--------->
ALFIN1
<---------
YAB1
--------->
ATERF1(1)
------>
NtERF2
--
NtERF2
<---------
AtMYB61
----------->
HVH21
<------
NtERF2
--------->
DEAR3(1)
>
NtERF2
--------->
YAB1
<---------
AtMYB61
<---------
ICU4
----------->
HVH21
------->
GAMYB
>
At4g35610
<-------
GAMYB
<---------
AtMYB61
<---------
ATERF1(2)
<---------
DOF5.7(2)
--
RAV1(1)
<---------
MYB46(3)
<--------
P
--------->
RAP2.6(3)
<---------
MYB46(3)
----
cat
tgatgaagcatattgtggaaattcaaggtcgttgatggtggtggtggttggattatgacggcggcggcgacggcggtcgttaaccgccgaggaatcc
19855200
<---------
AHL20(2)
--------->
ANAC46
--------->
AHL20(2)
--------->
ANAC58
-
--------->
AHL20(2)
--------->
ANAC58
-
<---------
AHL20(2)
--------->
TOE2(3)
---------->
DOF2
-
<---------
TOE1(2)
--------->
TOE1(3)
<---------
ATHB12
>>>>>>>>
<---------
SPL7
--------->
ARR14(2)
------>
NtERF2
>>>>>>>>>
TBF1
<---------
MYB46(3)
<---------
ARR14(2)
----------->
RAV1(1)
>>>>>>>>>
TBF1
<
>
GLK1(1)
--------->
AHL20(2)
<-----------
GT1
<---------
ALFIN1
--------->
MYB46(3)
>>>>>>>>>
TBF1
-
----->
LBD16
--------->
AHL20(2)
------>
ZmHOX2a(1)
--------->
ANAC55(1)
>>>>>>>>>
TBF1
-
agagtcgttcgatttatttaattcaacattttgcctctcctccaaatcccaaaccctaaacacgccaacaaatcaaagatgaagaagaagaagaagaaga
19855300
-------->
ANAC58
-------->
ANAC55(1)
-------->
ANAC55(2)
>
TBF1
---------
ANAC55(2)
-------->
ANAC58
<---------
GLK1(2)
---------->
ID1
-------->
ANAC46
-------->
P
<----------
DOF2
<----------
DOF2
*
TSS
agacgtaattgaattttgcagactaacccatgactaaatttctcttcttttgtctaaagattgtttcttttttagaatttgtctctgtttctg
agaattc
19855400
<----------
DOF2
<---------
ARR11(3)
--------->
ARR11(3)
---------->
DOF2
--------->
ANAC58
<------
ZmHOX2a(1)
<---
--------->
ANAC58
--------->
LBD16
<---
<------
ZmHOX2a(1)
<---------
ARR14(2)
<---------
AHL20(2)
--------->
ANAC58
--------->
ARR14(2)
--------->
AHL20(2)
--------->
ANAC58
<XXXXXXXXXXXXXXXXXXXXX
MIR831
--------->
GLK1(2)
<---------
AHL20(2)
------------------------>
ANAC81
<------------
CBF
<---------
LBD16
--------->
AHL20(2)
aagaagcaaaaacagaggaagcaagaagagagagaagagatagagagatgtggaattgactaaacgagaatccaggaaagctctttttaattttttgttt
19855500
<-----------------
AGL1
<---------
At5g28300
<-----------------
AG
<-----------
GT1
<------
NtERF2
<------
NtERF2
--------->
GLK1(2)
----------->
GT1
<---------
ARR11(3)
--------->
LBD16
------->
GAMYB
--------->
ARR11(3)
<------
MYB83
--------->
RAP2.6(2)
--------->
At5g28300
<---------
LBD16
<------
MYB46(1)
<---------
LBD16
----------->
GT1
<---------
GLK1(2)
--------->
MYB59
------
ANAC58
--------->
MYB52(1)
<---------
RVE1(1)
<------
ZmHOX2a(1)
------
------
ANAC58
--------->
ZAT6
---------->
DOF2
--------->
ALFIN1
--------->
YAB1
--------->
ALFIN1
ctggccggaaaatttacagtaacggtaaaaaaaggaagagattttggggtttggggaagagagggaaatggtaatggaaggagtgtgtttggtcataaaa
19855600
<---------
TOE1(3)
<---------
TOE2(3)
<---------
AHL20(2)
--------->
YAB1
<---------
AHL20(2)
<---------
ICU4
--------->
AHL20(1)
<---------
YAB1
<---------
AHL20(1)
<---------
ICU4
<---------
AHL20(2)
--------->
YAB1
<---------
AHL20(2)
--------->
AHL20(2)
---->
DOF2
--------->
YAB1
<----------
DOF2
---------->
DOF2
<---------
AHL20(2)
agagctctctgatactcatcatcatcacttgtgcttttatttcatttttaaagtgttttcttattttatattatatattttatggtttttctaaatgaaa
19855700
----------->
HVH21
<---------
AtLEC2
--------->
ANAC55(2)
<---------
AHL20(1)
--------->
ARR11(3)
---------->
ID1
----------->
GT1
<---------
YAB1
<---
<----------
DOF2
<---------
ICU4
<-----------
GT1
<<<<<<<<<<<<<<<<<
LFY
<------
--------->
DAG2
--------->
YAB1
--------->
AHL20(1)
<-------
TEIL
<---------
AHL20(1)
---------->
DOF2
<-------
TEIL
--------->
AHL20(2)
<-----------
GT1
<---------
ARR11(3)
aacaaaaagcttttgtccgattcatcatgtggaaatattttacatgacatttcgaattgtattagctatatacattacaatggatatattttggt
agagg
19855800
<------
MYB46(1)
<------
MYB83
--------->
MYB59
<---------
AtMYB61
<---------
TOE1(2)
<---------
YAB1
------
<---------
TOE2(3)
--------->
YAB1
--------->
ANAC58
<---------
ZAT6
------>
ZmHOX2a(1)
<---------
TOE2(3)
--------->
ANAC58
------
ARR14(2)
<---------
ZAT18
<---------
AHL20(2)
--------->
YAB1
---
TOE2(3)
<-------
TEIL
<---------
TOE2(2)
--------->
ZAT6
---------->
DOF2
---------->
DOF2
ttactgtaagaatatcaacacatatacatagtcctcttaggtttggttctgactaccactatttttttttgttaaagatgatagaaactataagcactaa
19855900
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AGI:
At1g53230.1
Description:
TCP3 (TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 3); transcription factor. similar to TCP4 (TCP FAMILY TRANSCRIPTION FACTOR 4), transcription factor [Arabidopsis thaliana] (TAIR:AT3G15030.2); similar to TCP4 (TCP FAMILY TRANSCRIPTION FACTOR 4), transcription factor [Arabidopsis thaliana] (TAIR:AT3G15030.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39371.1); contains InterPro domain Transcription factor, TCP (InterPro:IPR005333)
Range:
from: 19853456
to: 19855393
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At1g53233.1
Description:
other RNA
Range:
from: 19853699
to: 19855795
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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