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AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                                  <-
                                                                                                 ---
                                      <---------DAG2                                             <--
      <-----------------AGL1          <----------DOF2                                          <----
------>ANAC46                        <---------ANAC58                                          <----
----->LBD16                          <---------ANAC58                                    <------MYB83
----LBD16------>ZmHOX2a(1)       <---------ANAC58                                       <---------MYB46(3)
--------->AtSPL3                 <---------ANAC58                                      <---------ANAC58
->ARR14(2)                   <---------ANAC58                                          <---------ANAC58
--ARR14(2) <----------DOF2   <---------ANAC58    <---------YAB1          --------->ATHB12<------MYB46(1)
 
gcacaacttatcctctttggacatgtttcatagcttacttgctttacccattctccttgggtctggtctatattcttgattactggtttggctggtcgta  19851200
                                                ------->PIF5
                                                <-------MYC3                           <---------ARR14(2)
                                                ------->MYC3                           <---------GLK1(2)
                                                <-------PIF5                           --------->ARR14(2)
                                                ------->MYC2                    <---------AHL20(2)
                                                <-------MYC2                  <---------AHL20(2)
                                               <---------ANAC58               --------->AHL20(2)
 <-----------GT1                   <---------ANAC58      <---------MYB52(1)  <-----------------AGL3
--------GLK1(1)                    <---------ANAC58    <---------ANAC58     --------->AHL20(2)
------>ARR11(3)               --------->ATHB12 <---------ANAC58             <---------AHL20(2)
-------ARR11(3)              <---------YAB1 <---------LBD16               --------->AHL20(2)    ----
-----TOE2(2)                 <---------ATHB12<---------ANAC46             <---------AHL20(2)    <---
-----TOE1(2)           ---------->ID1 <-----------ARR10<---------ANAC58 --------->AHL20(2)    <-----
 
gatatcactctctgttcaaagagtttgttctaatgagtgagtgtcttcgcgcgtggtttcgtttcttctctacatatatatatatatatggattctcgag  19851300
                                                                    <---------ANAC58
                                                                 <----------DOF2
                                                              <---------AHL20(1)
    --------->TOE2(3)                                         <---------ARR11(3)
------->GT1                                     <---------At4g35610 <---------ANAC58
------ZAT6                              <---------YAB1        --------->ARR11(3)
----ANAC46                          <---------GLK1(2)   ----------->GT1                           --
 
tgtaaaaacttaaattctgagatttgtgtattggaaacagagtcttattgaagctaatacagtaatatctttcttgtttcttctgtctatttagtcttct  19851400
                                                                                     --------->YAB1
              <---------ANAC58                                        <---------ANAC46
              <---------ANAC58                                        <---------ANAC58  --------->YAB1
        <---------YAB1                                                <---------ANAC58 <---------YAB1
    <----------DOF2                                                   <---------ANAC55(1)
 <---------ARR11(3)             <-----------GT1                  ----------->GT1     <---------ICU4
--------->REM1(1)       --------->YAB1         <----------DOF2  --------->DAG2      --------->ICU4
---->ZmHOX2a(1)      <----------DOF2     ------->TEIL          ---------->DOF2      <---------ATHB12
 
cctacatctttatttttgcttgctcttttatagttttacttatggatgttctttgtattgaaccaaaaaagttacttgtaagttgtaatcatcatattta  19851500
                     --------->LBD16
                    <---------HSFB2a(2)
                    <---------LBD16
                    --------->HSFB2a(2)
                   <---------ANAC46
                   <---------LBD16                                                                 <
                  <---------LBD16                                                                 <-
            <---------AHL20(2)                                                                   <--
           <---------AHL20(2)               ------>MYB46(1)                                      <--
           --------->AHL20(2)               ------>MYB83                                         ---
       <---------AHL20(1)                --------->MYB46(3)                <------------CBF      ---
       --------->AHL20(1)                --------->DEAR3(2)      --------->ANAC58               <---
       --------->AHL20(2)            ------>ZmHOX2a(2)           --------->ANAC58               <---
       <---------AHL20(2)    --------->AHL20(2)  ----------->HVH21      ------------>CBF  --------->At4g35610
 
gagattgaaatttattaatttttcggggaaaaaaaaatgatcgaaccaacttatgacacttacttagcaagtaatgccaattgtaccataagccgatgaa  19851600
                                                     <------MYB46(1)
                                                     <------MYB83
                                                     <---------MYB46(3)
                                             <---------At4g35610
                                             --------->At4g35610
                                             --------->ZAT2
                                           <---------CCA1(2)
                                           xxxxxxxxxxxxxxxx>smallRNA(le3)
                                          xxxxxxxxxxxxxxxxxx>smallRNA(se3)
                                          <---------MYB52(1)
                                          --------->LBD16                                          -
                                         xxxxxxxxxxxxxxxx>smallRNA(s)                            <--
                                         <---------ANAC55(2)     <------MYB46(1)                ----
                                         --------->ANAC55(2)     <------MYB83             xxxxxxxxxx
                                        xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                xxxxxxxxxx
                                        xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                --------->ARR14(2)
                                        xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               <---------ARR14(2)
                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)           xxxxxxxxxxxx
                                        xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)            --------->LBD16
          <---------ANAC55(2)           xxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)             <---------TOE1(2)
          --------->ANAC55(2)           xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            <------NtERF2-
     --------->YAB1                     *TSS <---------ZAT2     <---------AtMYB61     <---------ANAC46
    <-------TEIL                        xxxxxxxxxxxxxxxx>smallRNA(i)                  <---------ANAC58
---------WOX13(1)                       xxxxxxxxxxxxxxxx>smallRNA(s)                  <---------ANAC58
-----------CBF                          xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)             xxxxxxxxxxxxxx
-------ICU4                      <---------MYB52(1)<---------MYB52(1)                <---------LBD16
------ATHB1                     <-----------TGA1<-----------RAV1(2)             xxxxxxxxxxxxxxxx>smallRNA(le3)
------>ATHB12                   <-----------HVH21 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<------NtERF2<-
------>ATHB51     <---------ANAC46   <-----------HVH21<-------GAMYB xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
------ATHB51     <---------TOE2(3)  <---------At4g35610        <---------MYB52(1) <-----------HVH21<
------AHL20(2)  --------->MYB52(1)  --------->At4g35610       <-------GAMYB--------->At4g35610 xxxxx
 
taattgattcattatgtactaacgtagaatgttatcgtcaggtcccgtagctcagttggttagagcgttggtcttatgagccgaaggtcgcgggttcgag  19851700
        --------->AtMYB61
     <---------PCF5
    <------NtERF2
   ------>NtERF2
   <---------ATERF1(1)
   --------->LBD16
 <---------LBD16
 <------NtERF2
------>NtERF2
-------->ANAC46
-------ATERF1(1)
----->PCF2
xxxxxx>smallRNA(i)
xxxxxx>smallRNA(s)                                                                           <------
xxxx>smallRNA(s)                                                                           ---------
-------->DEAR3(1)           <---------YAB1                                            --------->LBD16
xx>smallRNA(i)             <---------AHL20(2)                                       <---------LBD16
--------LBD16         --------->ICU4            <-----------GT1                   ------->TEIL     -
---------ALFIN1      <----------DOF2       <---------YAB1                         <---------ARR14(2)
xxxxxxxxxxx>smallRNA(s)  <---------YAB1<---------GLK1(1)                          --------->ARR14(2)
 
ccccgccgggaccaaaacttgagtctttattattttcgatagaattcttatttacaaacatttttagacccaaaaactgtatatgaatccggagaacctt  19851800
                                                                                      --------->YAB1
                               <------MYB83               <---------ANAC46         --------->WOX13(1)
---DAG2                        <------MYB46(1)      <---------YAB1           ------>MYB46(1)       <
>GLK1(2)                      --------->MYB59     --------->YAB1             ------>MYB83          <
--------->DOF2    <----------DOF2   ------>ZmHOX2a(1)<---------ICU4------->TEIL----------->GT1<-----
 
ttgaaagacgagctctaacttcttttttttggttcggtccttaactcttgatatcatcattttgtgtatgaagctaaaccaaatgtaaatcagaaaattc  19851900
                                                                            <---------ANAC58
                                                                            <---------ANAC58
                                                                          <------MYB46(1)
                                                                          <------MYB83
                                                                        <--------P
                                                                       <-------GAMYB
                                                                       <---------ANAC58
                                                                       <---------ANAC58
                                                    =================HOX2a_HOX2a
        --------->GLK1(2)                           <------ZmHOX2a(1) <------MYB46(1)
    --------->HSFB2a(2)                           <---------TOE2(3)   <---------MYB46(3)
---------ANAC58                                  --------->YAB1       <------MYB83 <---------ATHB12
---------ANAC58   <---------MYB46(3)      <---------ZAT6      <------ZmHOX2a(2)    <---------YAB1
--TEIL <---------GLK1(2)            <----------DOF2----------->GT1   --------->MYB59 --------->WOX13(1)
 
atgcctgccagaatttgatggtgtttgaaggaacataaacttttagtgtcaataaggaaaattggatcaaatttggttggcttcttatcattcagtaaat  19852000
                                        --------->ANAC55(2)                        --------->TOE2(3)
                                        <---------ANAC55(2)                     <-----------GT1
                                 --------->TOE2(3)         ----------->GT1   <---------REM1(1)
    <---------MYB52(1)        <-----------GT1        ---------->DOF2  <----------DOF2     ------>ZmHOX2a(1)
  ----------->GT1 --------->TOE2(3)<---------ICU4  ---------->DOF2    <---------DAG2      --------->At4g35610
 
gaaaccggttaactcaaacaacatcaaacgtagtaacctcattacttaataaccaaaagagccggttttaaaactttttgttgtaacctcatcctctgaa  19852100
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AGI:  At1g53210.1   
Description:  sodium/calcium exchanger family protein / calcium-binding EF hand family protein. similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT2G34030.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39368.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39365.1); similar to Os01g0212400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042378.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Sodium/calcium exchanger membrane region; (InterPro:IPR004837); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048)
Range:  from: 19848300    to: 19851504    Orientation: Forward
Links:  TAIR  MIPS 
 
AGI:  At1g53220.1   
Description:  pre-tRNA. tRNA-Ile (anticodon: TAT)
Range:  from: 19851641    to: 19851714    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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