Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                             --------->AHL20(2)                                           <---------AHL20(2)            <---------AHL20(2)         <---------AHL20(2)            --------->AHL20(2)         --------->AHL20(2) --------->AHL20(2)                --------->AHL20(2)                                   <---------REM1(1) <---------AHL20(2)            ---------->DOF2                                         <---------TOE2(3) ------->AHL20(2)        ----------->GT1--------->AHL20(2)                    --------->GLK1(1) --->AHL20(2)           ------------------------>ANAC81                     <------ZmHOX2a(1) ----AHL20(2)      --------->YAB1----------->GT1                          <---------TOE2(3)   aatttatatagtatttaaatatcaaaatgctaaaaaagaaaataaataaatgctgaacaaatccattgttgaatttgaggaatcccattaatgtagggaa  19847900                                                                                               ------                                                                               ======================                                                                               --------------->AGL15                                                                               <---------------AGL15                                                                               ======================                                                                   <---------YAB1              <-----                                                                --------->AHL20(2)    ----------->GT1                                                                <---------AHL20(1)    <---------ANAC55(2)                                <----------DOF2                 <---------AHL20(2)    --------->ANAC55(2)                                <---------DAG2     <---------AHL20(2)         --------->ANAC58<------                                <---------------AGL15           --------->AHL20(1)   <---------ICU4                                =====================================================================                          <----------DOF2 <---------ZAT18 --------->TOE2(3)   --------->ANAC58<------                     --------->DOF5.7(2)  --------->ZAT18----------->GT1    <---------ALFIN1  =======            --------->ANAC58    --------------->AGL15<---------AHL20(2) <-----------GT1    --------->MYB46(3)            --------->ANAC58    =====================================================================       --------------->AtSPL8<-----------GT1      --------->AHL20(2) --------->YAB1 --------->ICU4 <-   gaagtacttgtagtacccaatacgtttacttttactttttgtagtgggcaaattttatattgttaatttattaataacacaccctaataagtaacaacta  19848000                           ------>MYB83               --------->HSFB2a(2)               <---------HSFB2a(2)               --------->HSFC1(1)        <----------DOF2    ------>MYB46(1) --------->AGL15         <---------MYB59 --------->YAB1 ========================================MADS_MADS =========================================MADS_MADS ----------AGL15         <---------------AGL15                                                     -- -----------AGL2         --------------->AGL15                           <----------DOF2           -- ===========MADS_MADS   ----------------->AGL3                           <---------DAG2            -- -----------AGL3   <---------REM1(1)   <---------YAB1         <---------AHL20(2)     --------->ANAC58 =========================================MADS_MADS           --------->AHL20(2)     --------->ANAC46 ==========MADS_MADS  <-----------GT1<--------HAHB4         --------->AHL20(2)       --------->ANAC58 --------ICU4  <---------HSFC1(1)   <---------YAB1--------->ZAT6        <---------DAG2            <--   attttggcatctttcttctagatgtaaccaaattttgtattattaataacttacactaacaaatttatattcccccttttcttatacacccaaattttgt  19848100                                                                                               <-----                                                                                               <-----                                                                                             <-------        --------->KAN4(2)                                                                    --------       <---------KAN4(1)                                                               --------->MYB52(1)       <----------TaMYB80                                                              <---------ICU4       --------->KAN4(1)                                                               --------->YAB1      <---------KAN4(2)                      <---------ARR14(3)                       <---------AHL20(2)      ---------->TaMYB80                     --------->ARR11(3)      <------MYB83--------->TOE2(3) ------->ATHB12           <---------AHL20(2) --------->GLK1(2)       <------MYB46(1)  <---------ATHB51 ------->ATHB51           --------->AHL20(2) <---------ARR14(2)     --------->MYB59 --------->YAB1 ------>ATHB1------>ZmHOX2a(1)               <---------ARR11(3)     <---------------AtSPL8  <-------- -------YAB1--------->TOE2(3) --------->YAB1 --------->ARR14(3)     --------------->AtSPL8  <--------   attattggtatattcctaaattgactaattaaacataaacagaagaaaatcttggaaaaaatcaaacgatttggtacttactacataaataatggtgtag  19848200      --------->MYB52(1)      <-----------GT1                                                                               *TSS ----ANAC58                                                                                    ------ ----ANAC58                                                    --------->YAB1                  ------ --ZAT14                       <---------At5g28300        <----------DOF2                      ------ ->ZAT14                 --------->ICU4                   <---------DAG2                   ---------- -REM1(1)           ----------->GT1               ------>ZmHOX2a(1)                        <---------ALFIN1 -ANAC46            --------->YAB1               --------->TOE2(3)                      --------->PCF2   tgccaaattaacagggctaaaatggtaattagtcactgccttcttcgtcttccttattagctttatcatcttctccaaacaaaaaaaactgccccacacg  19848300                                <---------ARR14(2)                                ------->TEIL                                --------->ARR14(2)                             --------->ANAC46                             --------->ANAC58        --------->ANAC58     --------->ANAC55(1)        --------->ANAC58     --------->ANAC58        --------->ANAC46  <---------REM1(2)                                                   ------- --->ANAC46           --------------->AtSPL8                                          <---------GLK1(1) --->ANAC58         <-----------GT1                   <-------TEIL                  --------->ATHB12 --->ANAC58   <---------DAG2 <---------ANAC55(2) --------->AHL20(2)               <---------WOX13(1) ->RAV1(1)    <----------DOF2--------->ANAC55(2) <---------AHL20(2)             --------->ATHB12   aattacacacacacaactttattatctgtacacgtatatgtgtgtgtgtatatatatacatactcatccacaaaaactcgactgattgatttctccatga  19848400                                                                  <------ZmHOX2a(2)                                                                  =======================HOX2a_HOX2a                                                                  <---------GLK1(1)                                                                 --------->ARR11(3)                                                                 <---------AGP1                                                                 --------->AGP1                                                                 <---------ARR14(2)                                                                 --------->ARR14(2)                                                                 <---------ARR11(3)                                                                <---------CCA1(2)                                                             <-------TEIL                                                     --------->YAB1------>ZmHOX2a(2)                                                     <---------ICU4======================HOX2a_HOX2a                     <----------DOF2                <---------ATHB12                    <---------DAG2                  --------->ICU4--------->GLK1(1)         <----------DOF2     ---------->ID1       --------->WOX13(1)     <---------CCA1(2)      ------>ZmHOX2a(1)    <-----------RAV1(1)  <---------ATHB12<---------At4g35610 -->AtLEC2       <-----------GT1        <----------DOF2     --------->GLK1(2)     ------>ZmHOX2a(1)   acaacgtcctcctttgatttcacctttttttgttgtcttcttctttcgaaatcaatcatgagattcagatctctcatctctctcctcttccttctcttct  19848500                                                                                                   --                                                                                                 ----                                                                                               ------                                                                                              -------                                                                                              -------                                                                                              <------                                                                                              <------                                                                                              <------                                                                                           <---------ARR14(2)                                                                                           --------->ARR14(2)                                                                                         <---------ATERF1(1)                                                                                 <-----------ARR10<--                                                                                <---------CCA1(2)<---                                                                          <---------MYB46(3) --------                     <-------TEIL                                         --------->MYB55(2) <-------        --------->At4g35610                                              --------->ALFIN1<---------DEAR3(2)        <---------At4g35610                                           <---------DEAR3(1) <---------MYB46(3)     --------->At4g35610                                           ----------->HVH21    <---------TOE1(2)     <---------At4g35610                                          --------->DEAR3(2)    <---------DEAR3(1)   tcacttcatctgcttacgctcgattcgtctccctaaacccatcttcaacgagtctaatctccgatggaatcgacggtggttcaaatctcgccggttccgg  19848600                            <---------At4g35610                            ----------->RAV1(2)                            --------->ZAT2                            --------->At4g35610                            <---------ZAT2                         <---------LBD16                         --------->ATERF1(1)                         <------NtERF2                        ------>NtERF2            <---------DEAR3(2)            <------MYB83<---------ATERF1(1)            <------MYB46(1)------>NtERF2 ---->ZmHOX2a(2)       --------->ARR14(2) ----->ARR14(2)        <---------ARR14(2) --->LBD16  <---------MYB46(3)                                               --------->REM1(2) -->HSFB2a(2)         <---------At4g35610      <---------ANAC58              --------->ZAT14 -->ANAC55(2) <---------MYB52(1)     --------->DAG2                          <---------ZAT18 ---ANAC46 <---------DEAR3(1)<----------CDC5   <---------ANAC58            --------->LBD16 ---ANAC55(2)<-------GAMYB --------->LBD16    --------->HSFC1(2)          <---------ANAC46 ---HSFB2a(2)<---------MYB52(1)     ---------->DOF2            --------->ANAC55(2) ----ZmHOX2a(2)      <---------RAP2.3(1)      <---------HSFC1(2)          <---------ANAC58          - ------ARR14(2)     <---------RAP2.6(2)    <------ZmHOX2a(1)  <---------LBD16<---------ZAT14        < --------->AGL1<---------MYB46(3) <------ZmHOX2a(1)   --------->At4g35610 <---------ANAC58         <- --LBD16   <---------DREB2C(2)  <---------TOE2(3)     <---------At4g35610 <---------ANAC55(1)      --   atcggttatcaagtcggttgtttcggctccggctgaggaaaaggaggaagcttgtgagcagacatacgggtttatgccgtgtactaagaccgctcttgga  19848700                                                  <---------CCA1(2)                                                 <---------ARR14(2)                                                 <---------ARR11(1)                                                 --------->ARR14(2)                                                 ------->TEIL                                              <---------O2                                              --------->O2                                              --------->ANAC55(2)                                           ----------->HVH21                                          <------NtERF2  --------->At4g35610                                        <---------DEAR3(1)                          --------->TOE1(2)                                       <---------At4g35610 --------->HSFB2a(2)     ------>ZmHOX2a(2)        <------------------------ANAC81--------->At4g35610 <---------HSFB2a(2)    <------ZmHOX2a(2)       <---------------AGL15        <---------LBD16      --------->ZAT2          <---------ARR14(2)       <---------YAB1               <---------At5g28300  <---------ZAT2          --------->AGP1       --------------->AGL15    <---------ICU4<---------ANAC55(2)                --------->ARR14(2)      <-----------------AGL2  <---------TOE1(2) <---------CCA1(2)   --------->At4g35610 ------>MYC3            <---------GLK1(1) --------->ATERF1(1)       <---------At4g35610 -------MYC3    <----------DOF2<---------YAB1 <---------ANAC46    --------->ZAT18--------->ARR11(3) --------ANAC55(1)      --------->GLK1(1)<---------ATERF1(1)      <---------ZAT18<---------ARR11(3) ------->ANAC55(2)  <---------TOE2(3)<---------RAP2.6(2) <---------At4g35610    <---------GLK1(1)   aacgtgtttctgattttggtttatggatttctcatgtttacggctgcgacgtatctctctgctggaagtgagcttcttcttgagatccttggacctggaa  19848800  Previous    Next  AGI:  At1g53210.1    Description:  sodium/calcium exchanger family protein / calcium-binding EF hand family protein. similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT2G34030.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39368.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39365.1); similar to Os01g0212400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042378.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Sodium/calcium exchanger membrane region; (InterPro:IPR004837); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) Range:  from: 19848300    to: 19851504    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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