Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                               <---------GLK1(1)                                            ---------->DOF2                                           <------ZmHOX2a(1)             <---------YAB1               --------->ANAC58         <---------GLK1(2)                --------->ANAC58    --------->TOE1(2)                  --------->At4g35610                                          <  <---------ARR14(2)                   <---------At4g35610                                         <-  --------->GLK1(2)            --------->ARR14(2)    <---------ARR11(3)                           <--  --------->ARR11(3)           <---------ARR14(2)    <---------GLK1(2)                      ---------  <---------ARR11(3)           --------->GLK1(2)     --------->ARR11(3)                    <---------TOE2(3)  --------->ARR14(2)          <---------GLK1(2)    ----------->ARR10                ----------->ARR10   gcaaaatctgggattcttcttgcccatagaaagaatctgtgagcaggaaagccgagatttttgcagcgtttcaatacttgttcgactagatttgacgaaa  19613900                                                                                      --------->CCA1(2)                                                                                      <------ZmHOX2a(2)                                                                                     --------->ARR11(3)                                                                                     <---------ARR11(3)                                                                                     --------->AGP1                                                                                     --------->ARR14(2)                                                                         ------>ZmHOX2a(2)                                                                        <------ZmHOX2a(2)                                                                       --------->ARR11(3)                                              <---------LBD16          --------->ARR14(3)                                            <---------ARR14(2)         <---------ARR14(2)                                            --------->ARR14(2)         --------->ARR14(2)                                         <---------TOE2(3)   <------ZmHOX2a(1)       <---------AGP1                                         <---------TOE1(3)   ==================HOX2a_HOX2a          <                                     <----------DOF2         ================================HOX2a_HOX2a                                 ===================================HOX2a_HOX2a      <---------ARR14(2)                                 ------>ZmHOX2a(2)           ===================HOX2a_HOX2a         -                                ====================================HOX2a_HOX2a   --------------->AGL15                               --------->ARR14(2)            =================================HOX2a_HOX2a                               <---------ARR14(2)  --------->ABI4(2)   <---------ARR11(3)         <--                               --------->ARR11(3)  <---------MYB46(3)  <---------ARR14(3)      <----- ---------LBD16                <---------ARR11(3) <---------AtMYB61   <---------GLK1(1)       <------ --------LBD16              --------->HSFB2a(2)   --------->ALFIN1--------->LBD16 <---------------AGL15 -------LBD16----------->RAV1(1)<------ZmHOX2a(2)<---------MYB52(1)   --------->GLK1(1)------>ZmHOX2a(2) >ANAC46    <----------ID1  <---------HSFB2a(2) --------->LBD16 <---------LBD16  <-----------------AGL2   ctcggggagagtaagcgacaagagtgtgttcgagatcgtctttagggttccggtggtcgctcaggacgcgggagatctcgtttactagatctggtgatgg  19614000             --------->REM1(2)             <---------ZAT14     --------->REM1(2)              <---------TOE2(3)  <---------ANAC46               <---------WOX13(1)  ---------->DOF2  ------>ZmHOX2a(2)            --------->ATHB12   <------MYB46(1) ---------ARR14(2)             -------->HAHB4     ----------->GT1 -------->ARR14(2)            <---------YAB1      <------MYB83 -------MYB46(3)    ----------->ARR10  --------->CCA1(2)                                          --- ----MYB46(3)--------->ZAT14  <---------ATHB12   --------->MYB59                            --------- ---AtMYB61 --------->ALFIN1  --------->ICU4     --------->MYB46(2)                  --------->ARR14(2)   tggatcgtgtagaagtgtagagaagatgcgaaatgattgagatttaggggtttggtaaagagcgcgaacaagagaagagactgttcgaatcgccattcaa  19614100                                                               <---------ZAT18                                                               --------->ZAT18                                                             --------->PCF2                                                             --------->At4g35610                                                             <---------At4g35610                                    <------------CBF  <---------YAB1              <---------ALFIN1                                --------->ANAC58    --------->YAB1             --------->PCF2 ---->GAMYB                     --------->ANAC58    <---------AHL20(2)  --------->AHL20(2) >AtLEC2            *TSS      ---------->DOF2     <-----------TBP       <---------AHL20(2)<---------AHL20(2)   cagagcaatggagccaatttgagttttaaacacaaagccattggatttgtatatttataagtgagcccacttaatttatcaggcccacttaatttatcgc  19614200                                     ---------->DOF2                                 --------->MYB59                                <-------TEIL                               --------->ARR14(1)                               --------->GLK1(2)                               --------->CCA1(2)                              --------->ARR11(1)                              <---------GLK1(2)                              <---------ARR14(2)     ----------->GT1                            <---------TOE1(3)    <---------ANAC58             ---------->DOF2                            ----------->ARR10 <---------RAP2.6(2)       <-------TEIL                            <---------TOE2(3) <---------DEAR3(1)     --------->At4g35610                    <---------ARR14(2)       --------->SPL7          <---------At4g35610                    --------->ARR14(2)       --------->RAP2.6(3)------>ZmHOX2a(2)              --------->ATHB12--------->ARR14(2) <---------ANAC58  <-----------RAV1(2)             <-------TEIL   <---------YAB1--------->LBD16      <------ZmHOX2a(2)              -------           --------->YAB1<---------MYB52(1)----------->HVH21  --------->ARR11(3)   --------->CCA1(2)      ------------>CBF------>ZmHOX2a(2)  <---------LBD16      <---------ARR11(3)  <----------ID1      <------ZmHOX2a(2)----------->GT1  <---------LBD16   ---------->DOF2    --------->AHL20(2) -----   aagattagatcaatattcatgggatcggttaagattcggtaaaccgggacggcttgagttaaaagatcgccagatgcaaataaagagacaagagaagaaa  19614300                                                                                     --------->ARR14(2)                      --------->ANAC46                                       --------->ARR14(2) <----       <---------TOE2(3)                                                     <---------ARR14(2) ----- --->DOF2 *TSS   <----------DOF2                     ---------->DOF2 <-----------GT1 <---------GLK1(2) ------>GT1  <---------RAP2.6(2)                ------->GAMYB    <----------DOF2     <---------ARR14(2)   gaaaattttgatgtttcggcttctacgaagcatttgcaaaacttgtccaactgaagaaagcttgagacttttcactgggtatttgcagtttctcactgaa  19614400                                                                                                 <---                                                        <----------DOF2                        <-----                                        --------->HSFC1(2)               <---------ANAC58      <----- -----GLK1(1)                 <-------TEIL<----------DOF2                <---------ANAC58      <----- ---->GLK1(1)                <--------P <---------HSFC1(2)  <----------DOF2      ---------->DOF2<----   atccctaaaacttgggtcttgaagtatataggtagatgtcgaagcttttactcattttctttcttttttggtgtttcttacttcaaagtttctatttgcg  19614500                                                                               ------->GAMYB                                                                               --------->TOE2(3)                                                                              --------->MYB46(3)                                                                           ------>ZmHOX2a(1)                                                                          <---------MYB59                                                                   <-----------GT1                                                                   <---------AHL20(2)                                        -------->P             <---------AHL20(2)                                 --------->At4g35610          --------->AHL20(1)              <------   <---------ANAC46              <---------ZAT2               --------->AHL20(2)         --------->At4g35610 ------MYB52(1)                  --------->ZAT2               <---------AHL20(2)         <---------HSFC1(2) ----ANAC46                      <---------At4g35610          <---------AHL20(1)         <---------At4g35610 ----ANAC58                  <-----------HVH21        <----------DOF2 <----------DOF2    --------->HSFC1(2) ----ANAC58              <------ZmHOX2a(2)--------->HSFB2a(2) --------->ARR11(3)        --------->GLK1(2) ---GAMYB               --------->ARR11(3)<---------HSFB2a(2) <---------ARR11(3)   ---------->DOF2   ttgttttgtgttttgcagagaagatggatcatgtcagcagtctaccagaaggtgttctttgcaatatattttctttcctaaccacaaaagaagctgcttt  19614600                                                                                              <------ZmHOX2a(1)                                   <---------ANAC58                               --------->LBD16 ---                                ------>ZmHOX2a(1)                                --------->LBD16 <---                        <------NtERF2                                           --------->HSFB2a(2) <                       <---------ZAT18                                          <---------HSFB2a(2) <                   --------->ALFIN1<---------ANAC46  <---------YAB1   <----------DOF2     <--------P-    <---------GLK1(2) <---------ANAC46   ---------->ID1   --------->YAB1        ----------------->AGL1 ----DOF2        --------->CCA1(2) <---------ANAC58  <---------MYB52(1)         ----------------->AG-   gacttcgattctctgcaagagatggcgcaatctcctcgcgtttgtccctaatctcgttattgatgactctgtctttctccatcccgaagagggtaaggag  19614700              --------->ZAT2     --------->ANAC58     --------->ANAC58    <-------TEIL  --------->TOE1(2)  <----------DOF2 ------->DOF2 <---------At4g35610                         --------->At5g28300 ---ZmHOX2a(1)<---------ZAT2                --------->ARR14(2) ---------------AtSPL8          <---------MYB46(3)       ----------->GT1 ---------------AtSPL3          --------->MYB52(2)   <---------ZAT14 -------------->AtSPL3<-------TEIL          <---------ARR14(2) -------->DAG2--------->At4g35610<-------GAMYB       --------->ZAT14     <---------TOE2(3)   gaaaggtacgaaattcagcagagcttcatggagtttgttgatagagtattggcattgcagggtaattctcccattaagaaattctccctcaagtttagaa  19614800  Previous    Next  AGI:  At1g52640.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G77360.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62764.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 19612399    to: 19614120    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g52650.1    Description:  Identical to F-box/LRR-repeat protein At1g52650 [Arabidopsis Thaliana] (GB:Q9SSR7;GB:Q681K5); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT4G13960.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63569.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain FBD-like (InterPro:IPR006566) Range:  from: 19614310    to: 19616262    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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