Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                        ------>MYB46(1)                                                    <---------MYB111(1)                    <---------TOE1(3)               <---------MYB59                    <---------YAB1                  <---------MYB111(2)              <---------------AGL15                 <---------MYB46(2)              --------------->AGL15               -------->P             <-----------------AGL3              <-----------GT1             ====================================MADS_MADS    <---------AHL20(1)                         <---------ANAC58    --------->AHL20(1)                         <---------ANAC55(2)              <---------AHL20(2)    <---------AHL20(2)        <-----------GT1  --------->ANAC55(2)          --------->AHL20(2)    --------->AHL20(2)    <---------YAB1       <---------ANAC58         <-------TEIL   --------->AHL20(2)----------->GT1         <-----------GT1       --------->AHL20(2) ---------AtSPL8    <---------TOE2(3) ----------->GT1--------->MYB55(1)<-----------GT1       <------- -------->AtSPL8  --------->YAB1 <---------------AGL15-------->P   --------->YAB1---------->DOF2 -------->AtSPL3 <---------YAB1  --------------->AGL15------>MYB83<---------ATHB12--------->DAG2   --   tacaattttattttgacttattatggttatatttactatatagtgaattacttacctacctattttcaataatatacattatataaagttgaattttcat  18427800                                            <-----------GT1                                        <---------AHL20(2)                <---------AHL20(2)      <---------ICU4                --------->AHL20(1)      --------->ATHB51                <---------AHL20(1)      --------->AHL20(2)   <---------CCA1(1)                --------->AHL20(2)     --------->ICU4        <---------RVE1(1)          ------>ZmHOX2a(2)       --------->YAB1            <---------ARR11(3)   --------->ARR14(2)         <------ZmHOX2a(2)        --------->TOE2(3)         --------->ARR11(3)   <---------ARR14(2)        <---------ARR11(3)      <---------ARR11(3)    ---------->DOF2       ----------->GT1    --------->CCA1(2)           --------->ARR11(3)  <---------AHL20(2)--------->YAB1            <---- --YAB1 --------->ARR11(3)     --------->YAB1 --------->ANAC55(2)--------->AHL20(2)          ------->TEIL -------->DOF2 --------->AHL20(2)<---------YAB1<---------MYB59   <---------AHL20(2)   <---------ANAC55(2)   agaaagataagatcgcattaaattagagactaattatcttaattatttacctatttaaaagagatatttaaatgaaaatagagaaaacgcgtatgaattt  18427900                --------->ANAC55(2)                <---------ANAC58                <---------ANAC55(2)                <---------ANAC58                               <---------YAB1              <---------AHL20(2)                              --------->AHL20(1)              <-----------GT1                                 <---------AHL20(1)          <---------AHL20(2)                               --------->AHL20(1)          --------->AHL20(2)                               --------->AHL20(2)  --------->AtMYB61                                       <---------ICU4                         <---  <---------ALFIN1          --------->AHL20(2)      --------->TOE2(3)   ----------->GT1   --------->ARR11(3) --------->MYB46(3)         --------->YAB1    ------------>CBF<---------AHL20(2)          <---------ARR11(3) -------GT1   --------->AHL20(2)             <-----------GT1<---------YAB1      --------->ARR14(2) --   acgaccactcgtttaattacttatcaacaatgaaattttggtcttataaacaattcttaaatattatatttaagaagaaaaaaatcccctaagaacttca  18428000                                                                    <------------CBF                                                                    >>>>>>>>>ARR1                                                                    >>>>>>>>>ARR2                                                         <---------ANAC58                                                         <---------ANAC58                       --------->ARR14(2)             ------->GAMYB--------->ATHB12                       <---------ARR14(2)            <------------MYB.PH3(1)             --------->DAG2  <----------DOF2         --------->MYB46(3)       ---------->DOF2------>MYB46(1)               --------->RAP2.6(3)                      <-------   ---------->DOF2    ------>MYB83                  <---------At5g28300                      -------- ------YAB1 ---------->DOF2  <---------DAG2        <-----------GT1<---------YAB1           <---------ZAT18 -------->DOF2   <-----------GT1                   --------->MYB52(1)             --------->ALFIN1   tgaaagaaagaaagaaaagtaaccaaataccctttttgattttgatgtcttagtaacggccttgtcttatgattgtattttggggttttgctgtgagctt  18428100          ----------->TBP                                                        --------->WOX13(1)        ----------->TBP                                                      --------->ANAC46--------      <----------DOF2             <----------DOF2  <----------DOF2     --------->AHL20(2)   --------- --At4g35610                ------>ZmHOX2a(1) <----------DOF2          <-----------TBP --------->AHL20(2) ->At4g35610      <---------CCA1(2)    <-----------GT1               <----------DOF2--------->YAB1---   acttagctctttataaatctctatcttctcctatttctttttcaccatcttttctttctctctctctctctctttatataagtcattcataaaatcacaa  18428200                                                                                         <---------ARR14(2)                                                                                         --------->ARR14(2)                                                                                        <---------GLK1(1)                                                                                        <---------CCA1(2)                                                                                        --------->GLK1(1)                  ----------->GT1                                                      <---------KAN4(2)               --------->DAG2                                                       <---------PCF2         --------->ANAC58                  <---------YAB1                           <---------ANAC46 --------->ANAC46----------->GT1         <---------ICU4                    <----------DOF2 ---->CBF--------->ANAC58            ------------>CBF                   ----------->GT1---------->TaMYB80 >YAB1 ---------->DOF2               --------->AHL20(2)      --------->ALFIN1    --------->ALFIN1  <- ------>YAB1  ---------->DOF2   ------------>CBF            --------->ALFIN1   <-----------RAV1(1)<--   taaacacaacaaagcaaaaagggtaaaatgagcattcaattcaatatgactaatgctcaagagttggggcaagagggttttatgtggggcatatccaatt  18428300                                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                                           <------ZmHOX2a(2)                                                                           --------->CCA1(2)                                                                          <---------ARR11(3)                                                                          <---------ARR14(2)                                                                          --------->ARR11(3)                                                                          --------->AGP1                                                                          --------->ARR14(2)                                                                         --------->GLK1(1)                                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)              --------->MYB111(2)                                   <------NtERF2              <---------MYB46(3)                                   ------>NtERF2              --------->MYB55(2)                                  <xxxxxxxxxxxxxxxxsmallRNA(s)             <---------AtMYB61                                    --------->DEAR3(1)           <---------ZAT2                                         <---------ETT(2)          <---------AtMYB61                                       --------->ETT(2)                ---          <---------DEAR3(1)                                    <-----------HVH21                 <--          --------->ALFIN1                                      <---------ATERF1(1)              ----        --------->LBD16                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   -----       <---------ANAC46                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       ------       --------->HSFB2a(2)                        xxxxxxxxxxxxxxxx>smallRNA(s)           ----------->GT1       <---------HSFB2a(2)                    <-----------HVH21--------->ANAC46  <xxxxxxxxxxxxxxxxsmallRNA(s)      <---------LBD16               --------->ARR14(2) <-----------HVH21 <---------GLK1(1)    -------  <---------ICU4          --------->GLK1(2)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       --------->At5g28300 <---------YAB1<-------GAMYB    ---------->DOF2 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)     <-------GAMYB --------At4g35610   ---------->DOF2<---------ARR14(2)<xxxxxxxxxxxxxxxxsmallRNA(s)      <---------MYB46(3) -------YAB1 --------->ALFIN1<---------HSFB2a(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   ----------->GT1   ctgatgattccggaggtggttgcaaaagaatcgagaaagaaccgcttccatcacatccgtctcatccgtcgccagagatccagactacgacggttaaaaa  18428400                                                                <---------ARR14(2)                                                                --------->ARR14(2)                                                            <-------TEIL                      ----------->GT1               --------->YAB1   ---------->DOF2    --------->YAB1          --------->ANAC55(2) -------->GT1        --------->ICU4           <---------ANAC55(2) --------ID1         ----------->GT1          <---------At4g35610 ------->GT1  ---------->DOF2                 --------->At4g35610 ------------------->ANAC81                   ----------->RAV1(2)               ---------->DOF2 --->DAG2  --------->ANAC58           >>>>>>>>>TBF1 <---------ICU4        ---------->DOF2 --->DOF2  --------->ANAC58      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)------->TEIL     ---------->DOF2   gggaaaaaagagaacgaaaagaaatgataaaaaccatgaagaagaatcacctgatcatgaaatacatatatggaccgaaagagaaaggagaaagaagatg  18428500                                              <---------TOE1(3)                                         ------>ZmHOX2a(1)                                       <-----------------AGL1                                  <---------ALFIN1                                      <---------RVE1(1)                                 <---------ALFIN1           --------->YAB1             <---------ARR11(3)                                --------->LBD16            <---------ATHB12            --------->ARR11(3)                           <---------ANAC58   <---------TOE2(3)                       <------ZmHOX2a(1)                           <---------ANAC58 ------>ZmHOX2a(1)  --------->YAB1   <---------WOX13(1)                       <----------DOF2 <-----------------AG<---------ATHB51  <---------AHL20(2)                <-----------GT1--------->HSFB2a(2) <---------YAB1          <----------DOF2  <--------   agggacatgttttctaaattacatgctttgcttccccaacttcctcctaaggtatgattcaataataagagtgtatgctttaattgaaggattttttctt  18428600                         <---------YAB1                    <---------ICU4                   <---------AHL20(2)                  <---------AHL20(2)           <---------AHL20(2)               --------->AHL20(1)              --------->AHL20(2)                                  --               <---------AHL20(1)             <---------AHL20(2)                                  <--               --------->AHL20(2)        --------->At5g28300           <-----------GT1           ----              <---------CCA1(2)     <-----------GT1           <---------ANAC58                  -----   <---------AtLEC2--------->AHL20(2)    <---------MYB52(1)   <---------ANAC58              <-------- ---GT1    <-------TEIL<-----------GT1  ----------->GT1       <---------ANAC46  --------->GLK1(2)----   atttagcatgaaattcatatattaattaccatcgtttttaaccggtaatttatatgcgaaaattgtgtgtttataacacgattatctgtatgaattacca  18428700  Previous    Next  AGI:  At1g49770.1    Description:  basic helix-loop-helix (bHLH) family protein. similar to hypothetical protein [Vitis vinifera] (GB:CAN74162.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47832.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) Range:  from: 18428246    to: 18430450    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version