Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                             <---------CCA1(2)                                        ------>ZmHOX2a(1)                                       --------->TOE2(3)                            --------->ANAC58                                       --------->TOE1(3)                            --------->ANAC58                                      ------>ZmHOX2a(2)                            --------->ZAT18                                     <------ZmHOX2a(2)                           --------->At4g35610 --------->ATERF1(1)                --------->AGP1                               --------->ZAT2   <-- ----->NtERF2                       <---------ARR11(3)                      --------->YAB1        === ------>ATERF1(1)                   --------->ARR14(2)                      -------->HAHB4       <--- ----NtERF2                         <---------GLK1(2)                       <---------ICU4      ----- -----ANAC46                        <---------ARR14(2)                     --------->ICU4       <---- -----ANAC58                        --------->ARR11(3)                --------->TOE2(3)      <------- ---->ETT(1)                      ----------->ARR10   --------->ARR14(2)   <---------ATHB51 --------- -----ANAC58             <---------At4g35610          <---------ARR14(2) --------->YAB1    ---------- -----HVH21              ----------->RAV1(2)<---------ARR11(3)        <----------DOF2   --------->MYB52(1) ----RAV1(1)             --------->At4g35610--------->ARR11(3)    <----------DOF2<---------At4g35610   ggggccttcccaagacttaagtttatcatctgcgactagatccttaaatctttggagaactggatagactttctttaataatgagctcgcaaacggtaga  18416100                                              --------->At4g35610                                              <---------ZAT2                                              --------->ZAT2                                           <------NtERF2                                         <---------ANAC46                                        --------->RAP2.3(1)                                        <---------LBD16                                        <------NtERF2                                        --------->ATERF1(1)                                        --------->At4g35610                                        <---------At4g35610                                       <---------ERF1                                       <---------RAP2.3(1)                                       <---------DEAR4(2)                                       <---------RRTF1(1)                                       <---------ORA47(2)                                       <---------ATERF1(1)                                       <---------RAP2.6(1)          <------NtERF2                ------>NtERF2         <---------ERF1               --------->ALFIN1         ------>NtERF2                <---------ATERF1(2)         <---------ORA47(2)           <---------DEAR3(1)         <---------RAP2.3(1)          --------->ATERF1(2)        <---------ATERF1(2)           <---------RAP2.3(2)        <---------RAP2.3(3)           <---------RRTF1(3)        <---------DREB2C(2)           <---------RRTF1(2)        <---------RRTF1(2)            <---------DREB2C(2)        <---------DEAR3(1)            <---------RAP2.3(3)        <---------ANAC46             <---------ABI4(1)        <---------RRTF1(3)          <---------ATERF1(1)        --------->ATERF1(2)       --------->ATERF1(1)        <---------RAP2.3(2)     --------->ALFIN1        <---------RAP2.6(2)    <------NtERF2  <---------At4g35610       --------->ATERF1(1)     --------->ATERF1(1)  --------->ALFIN1            <---------DEAR3(2)                                  <----------DOF2  <-----------RAV1(1)         <---------ORA47(2)                <---------At4g35610 ---------RAV1(2)<---------ANAC46 <-----------RAV1(2)           <---------ZAT2   <---------ANAC58 =============RAV<---------ANAC58--------->ZAT14                --------->ZAT2   <---------ANAC58 ---ZmHOX2a(2)   <---------ANAC58--------->ABI4(2)              --------->At4g35610 ---->ARR11(3) <---------MYB46(3)<---------ZAT14           --------->ALFIN1      <---------ANAC46 -----AGP1--------->ATERF1(1) <---------DEAR4(2)        <---------AtMYB61   <------ZmHOX2a(1) -P  <---------DEAR3(1)      <---------DREB2C(2)       <------ZmHOX2a(1)  --------->ALFIN1        --- >At5g28300<---------DEAR3(1)<---------DEAR3(1)   --------->ALFIN1  --------->ALFIN1    <------ZmHOX2a(1) ->GT1 <------NtERF2 <---------ANAC46--------->ATERF1(1)--------->ALFIN1 <------ZmHOX2a(1) <------ZmHOX2a(1)   tcaggtgttggcggcgatggctggggtttaggcggtgcaggcggcggaagctgtggaggaggtggaagctgtggaggaggagggcttggaggaggagagg  18416200                                                                                                    <                                                                                                    <                                                                                                    <                                                                                        <---------ANAC46                                                         <------ZmHOX2a(1)     <---------ARR14(2) ---                                                       --------->ALFIN1        --------->ARR14(2)----                                                    --------->ALFIN1     <---------ARR14(2)      ----                                                 --------->ALFIN1        --------->GLK1(2)       ----                                              --------->ALFIN1           --------->ARR14(2)----------                                             <------ZmHOX2a(1)  <---------ARR14(2)     <---------LBD16             <---------ANAC46 <------ZmHOX2a(1) <------ZmHOX2a(1)       <---------GLK1(2)--------->LBD16   <------ZmHOX2a(1)     --------->ALFIN1  --------->ALFIN1     --------->ARR14(2)   <---------ARR14(2) ------>ALFIN1        --------->DAG2      <------ZmHOX2a(1)    --------->WOX13(1)    --------->ARR14(2)   gtggaggagggcatggagggggagaaggtggaggagggcatggaggaggaggagggggaggagggcaatctgcaggttctggttctggttccggtgaagg  18416300                                    <---------ICU4                                    --------->ATHB12      --------->DOF5.7(2) --------->MYB55(2)           <---------MYB46(3)      <---------YAB1         <---------MYB52(1)  <---------MYB46(3)    <---------MYB46(3)             --------->ICU4       <---------ANAC46     --------->ALFIN1   --------->ALFIN1              <---------ICU4      <-----------RAV1(1)    <---------MYB52(1) ---------DEAR3(1)               --------->YAB1<---------ARR14(2)          --------->LBD16       ---- ---------DREB2C(2)       <---------ALFIN1     <---------ARR11(3)        <---------LBD16   --------->ALFIN1 ---------ANAC46          --------->AtMYB61    --------->ARR11(3)   <---------MYB46(3)   <---------ANAC46 ------>MYB52(1)          --------->DEAR3(1)   --------->ARR14(2)  <--------P<---------AtMYB61  <---- ------->TGA1            <---------MYB55(2)    <---------GLK1(2)  <-------GAMYB<-------GAMYB  ------- ----->ALFIN1         --------->MYB46(3)      <------ZmHOX2a(1)  <---------MYB46(3)      <---------bZIP60(2) ------->HVH21     --------->DOF5.7(2)      <---------TOE2(3)   --------->ALFIN1       <---------ZAT14 ->HVH21<------ZmHOX2a(1)--------->MYB46(3) <---------TOE1(3) <-----------RAV1(1)      --------->ZAT14   tgacggtggaggattgttgtcgttaccaccaccgataatgatttctaaggattttctgtcgttaatgtggttgtttccggtggttgaagtgaagtggaga  18416400       ---------->DOF2                                   --------->GLK1(2) ---------->DOF2                                        <---------ARR11(3)             --------->ZAT18 ----->CCA1(2)                                          --------->ARR11(3)  <------ZmHOX2a(1) -----ARR14(2)      >>>>>>>>>TBF1                     ----------->ARR10   <---------TOE1(3) ---->ARR10   --------->YAB1                   <---------At4g35610   *TSS <---------TOE2(3)     -----   tttgaaagtgaaagaatgagaagaagaattgagagaattgaagccattgagttgatgagattttgtggtgagttttgaggataagtatggggactatgta  18416500                                                                                          <---------AHL20(2)                                                                                          <---------ICU4                                                                                          --------->ATHB12                                                                                          -------->HAHB4                                                                                         <---------ATHB51                                                                                         <---------YAB1                                                                                       <--------HAHB4                                                                                       --------->YAB1                                                                                       <--------ATHB1                                                                                       --------->ATHB51                                                                                       <---------ICU4                                                                                      --------->ICU4                                                                                      <---------ATHB12                                                                                      <---------ATHB51                                                                                      --------->AHL20(2)                                                                                    --------->YAB1                                                  <---------WRKY12                 --------->REM1(1)                                                 ------------>CBF              --------->At4g35610                                             --------->ZAT14                 <---------PCF2     <----      --------->ARR11(3)                <---------ANAC58                <---------MYB46(3)-------->ATHB1      <---------ARR11(3)                <---------ANAC58                --------->MYB52(2)--------->ATHB51   <------ZmHOX2a(1)                   --------->HSFC1(2)       <----------DOF2<---------At4g35610 -->TEIL                               <---------HSFC1(2) <------------CBF<---------ZAT6 --------->ICU4   tataaggagattttagagcatagaaatagagaagactaagaagcttgtgaagtcaatggacattgtcttttgggtagtgggagctacaataattattgat  18416600                                                                            <-----------GT1                                                                     <---------AHL20(2)                                                                    --------->AHL20(2)                                                                    <---------AHL20(1)             <-         <---------ZAT18                                            <---------AHL20(2) <---------ICU4         --------->ZAT18                   --------->ATHB12        --------->ICU4    <---------AHL20(2) -----------AGL15             <---------TOE2(2)               ----------->GT1      <---------AHL20(2)   attttgggtagtagactatgtaagtttttacataggtatgtttagttattgatatcaaactgagatgtaattttttttttgctatataaaaatttcatag  18416700                    ----------->GT1            <---------AHL20(2)    --------->ARR14(2)    --------->GLK1(2)                                   <---------STY1(2)    <---------ARR14(2)                           ---------->DOF2              --------->YAB1    <-----------ARR10                          <---------YAB1                <---------ZAT6 --------YAB1  <---------YAB1              --------->YAB1         ----------->GT1           ---------   tatgagtatctaaatttatgagtagtataactttgaactagggaatcatatgaaagctagatagttgaaagttaaactagtcataaacttatagtcatac  18416800    --------------->AGL15                        <---------ICU4    <---------------AGL15                        --------->YAB1                  ----------->GT1    <----------DOF2                             --------->ICU4       <---------At4g35610  ------->TEIL       ------->TEIL           ----------->GT1          --------->At4g35610 >YAB1   <---------YAB1                  ---------->DOF2<---------REM1(1)    <---------YAB1       ---   tatgaacttttatgagtagtatgaattttaaaaatgaaatggagaaaggaataatgaaatgtagcattttgagctgttttttatagtaaaacatatttca  18416900                                                                           <---------------AGL15                     <---------YAB1                                        <----------DOF2                   --------->YAB1                                          --------------->AGL15                   <---------ICU4                                          <---------DAG2                  <---------ATHB12                                         ==========================                <-----------GT1                                            ==========================               <---------AHL20(2)                                     <----------DOF2               --------->AHL20(2)                                    --------->TOE1(3)              <---------AHL20(2)                                     --------->TOE2(3)            ------->TEIL                                  ----------->RAV1(2)       --------->CCA1(2)                           <-------TEIL    -------->P <---------YAB1     ----      --------->AHL20(1)      ----------->GT1  --------->YAB1      ------>MYB46(1)             ------     --------->AHL20(2)<----------DOF2         <---------ICU4      ------>MYB83             --------- -------->GT1 --------->AHL20(2)              <---------ATHB12    <---------ALFIN1          <--------   tagtaaaatatatgaatttaatcatctttgagttgtttattgagtccaataagtacatttacctggcccaacctttactttttatagagaaatactttaa  18417000  Previous    Next  AGI:  At1g49750.1    Description:  leucine-rich repeat family protein. similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT3G19320.1); similar to Leucine-rich repeat, plant specific [Medicago truncatula] (GB:ABD32635.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) Range:  from: 18414597    to: 18416469    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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