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% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                                  xx
                                                                                                 xxx
                                                                                                 xxx
                                                                                                 <--
                                                                                                 <xx
                                                                                                 xxx
                                                                                                 <xx
                                                                                                 ---
                                                                                                 xxx
                                                                                                <---
                                                                                                xxxx
                                                                                                xxxx
                                                                                                xxxx
                                                                                                xxxx
                                                                                               xxxxx
                                                                                               <----
                                                                                             xxxxxxx
                                                                                             xxxxxxx
                                                                                             xxxxxxx
                                                                                            xxxxxxxx
                                                                                            <xxxxxxx
                                                                                           xxxxxxxxx
                                                                                           <xxxxxxxx
                                                                                          ----------
                                                                                         xxxxxxxxxxx
                                                                                         xxxxxxxxxxx
                                                                                         <xxxxxxxxxx
                                                                                        <xxxxxxxxxxx
                                                                                       xxxxxxxxxxxxx
                                                                                      xxxxxxxxxxxxxx
                                                                                      xxxxxxxxxxxxxx
                                                                                     xxxxxxxxxxxxxxx
                                                                                     <xxxxxxxxxxxxxx
                                                                                     xxxxxxxxxxxxxxx
                                                                                     xxxxxxxxxxxxxxx
                                                                                     --------->ZAT18
                                                                                    xxxxxxxxxxxxxxxx
                                                                                    <xxxxxxxxxxxxxxx
                                                                                    xxxxxxxxxxxxxxxx
                                                                             <xxxxxxxxxxxxxxxxxxxxxx
                                                                             xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
                                                                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
                                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxsmallRNA(i)
                                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    xxxxxxxxxxxxxxxx>smallRNA(le3)
                               ---------->DOF2                              xxxxxxxxxxxxxxxxx>smallRNA(fl3)
                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)             <xxxxxxxxxxxxxxxxsmallRNA(i)
                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                     --------->YAB1  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             xxxxxxxxxxxxxxxx>smallRNA(i)xx
                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             <---------MYB46(3)<xxxxxxxxxxx
                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                 xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
         <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           <------ZmHOX2a(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)
        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        <---------TOE2(3)<---------AtMYB61xxxxxxxxxxxxxx
  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   ----------->GT1  <---------YAB1xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
------>GT1  ------->TEIL xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
>ATHB12<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------->ICU4 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<
 
gttcaattggaaatgtatgtttaagcatgaattcgaaagtagatgatgtaattttgaggaatatgaaaattgatggtggaaatttaagggcccaaaagtc  18391100
         <xxxxxxxxxxxxxxxxsmallRNA(i)
       <---------At4g35610
       <---------ZAT2
       --------->At4g35610
    ---------->DOF2
   <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)
   xxxxxxxxxxxxxxxxxxx>smallRNA(se3)
  ----------->HVH21
 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
xxxxxxxxxxxxx>smallRNA(i)
-------LBD16
xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
xxxxxxxxxxxxxxsmallRNA(i)
------>LBD16
xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
------LBD16
xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
xxxxxxxxxxxxxxxxxxx>smallRNA(si3)
xxxxxxxxxxxxxxxxxxx>smallRNA(le3)
xxxxxxxxxxxxxxxxxx>smallRNA(si3)
xxxxxxxxxxxxxxxxxx>smallRNA(i2)
-----LBD16xxxxxxxxxxxxxxxx>smallRNA(i)
xxxxxxxxxxxxxxxx>smallRNA(le3)
xxxxxxxxxxxxxxxx>smallRNA(se3)
xxxxxxxxx>smallRNA(i)
xxxxxxxxxxxxxxx>smallRNA(se3)
xxxxxxxxxsmallRNA(i)
xxxxxxxxxxxxxx>smallRNA(le3)
xxxxxxxxsmallRNA(i)
>DOF2  --------->ZAT2
xxxxxxxxxxxx>smallRNA(si3)
xxxxxxxxxxxx>smallRNA(le3)
xxxxxxxxxxxxxxsmallRNA(fl3)                                       --------->GLK1(2)
xxxxxsmallRNA(i)                                     <---------ARR11(3)
xxx>smallRNA(i)                                      --------->GLK1(2)
xxxxxxxxx>smallRNA(le3)                         ------->GAMYB    <---------ARR14(2)
xxxxxxxx>smallRNA(le3)                        ------>MYB83       --------->ARR14(2)
xxxxxxxx>smallRNA(i2) --------->AHL20(1)      -------->P         <---------GLK1(2)
xxsmallRNA(le3) ----------->GT1      <xxxxxxxxxxxxxxxxsmallRNA(s)--------->ARR11(3)
xxxxxx>smallRNA(si3)  <---------AHL20(2)      ------>MYB46(1)    <---------ARR11(3)
xxxxxxxx>smallRNA(le3)--------->AHL20(2)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
xxxxxx>smallRNA(le3) --------->AHL20(2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
xxxxxsmallRNA(si3)   <---------AHL20(2)     --------->DEAR3(1)  <---------HSFB2a(1)
xxxxxxx>smallRNA(fl3)--------->ICU4  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
xsmallRNA(se3)--------->GLK1(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       <----------DOF2       <
xxxxxxxxxxxxxx>smallRNA(i)     xxxxxxxxxxxxxxxx>smallRNA(i)     --------->HSFB2a(1)           <xxxxx
xxxxxxxxxxxxsmallRNA(l2)    <---------YAB1--------->At4g35610   <---------HSFC1(2)           -------
xxxxxxxxx>smallRNA(si3)  <---------AHL20(2)--------->MYB46(3)   --------->HSFC1(2)           <------
---------DEAR3(1)    <---------ATHB51xxxxxxxxxxxxxxxxx>smallRNA(se3) <----------DOF2    <---------YAB1
 
cgggggtgaaagctgagaatcgaaataatttatgactcgaaaatcagccaacccaaaatctaatagaagattcttttcttctttttgttttttgattatc  18391200
                                       --------->TOE1(3)
                                 <---------ICU4
                                --------->ICU4
                              --------->YAB1
                              -------->ATHB1
                             <---------AHL20(2)                                   --------->WRKY18(1)
                             --------->ICU4                                   <-------TEIL
                       <---------TOE2(3)                                     --------->ARR14(1)
                  <-----------GT1--------->YAB1                              --------->CCA1(2)
                 --------->AHL20(2)    --------->TOE2(3)                    --------->ARR11(1)
          ----------->GT1    <---------ATHB51                               --------->ARR14(2)
----------DOF2   <---------AHL20(2) <-----------GT1                         <---------ARR14(2)
xxxxxxxxxxxxxxxxxxxsmallRNA(le3)<---------YAB1                              --------->ARR11(3)
-->ARR11(3) <---------MYB52(1)<---------ICU4             --------->ZAT6   ----------->ARR10
---ARR11(3)<-------GAMYB     --------->AHL20(2) ---------->DOF2    ------->TEIL ----------->GT1
 
ttctttttctaggctgttatttaactaatgaaattattattaccttaattttaaagtctaaaactacatgaacttgtaagatacggtcaaactaaaaact  18391300
              ------>NtERF2
             --------->bZIP60(2)
             --------->ANAC58
             --------->ANAC58         --------->ANAC55(2)                           --------->ANAC58
             --------->ANAC46      --------->ARR14(2)    <------MYB83               <---------ALFIN1
           <---------ALFIN1 --------->ETT(2)       --------->ICU4<---------ZAT6----------->HVH21
           --------->DEAR3(1)      <---------ARR14(2)   --------->MYB59      --------->ALFIN1
 <---------GLK1(2)          <---------ETT(2) --------------->AtSPL8  ---------->DOF2--------->ANAC58
 --------->YAB1     <---------AHL20(2)<---------ANAC55(2)<------MYB46(1)  --------->GLK1(2)    <----
 
acaagaatatcgcaccacgccattttttttgtctacagaatacgtttctttgtactaatttggttacagtgtaaaagaatgtgtgacacacattatgtct  18391400
                                                                          <---------At4g35610
                                                                     xxxxxxxxxxxxxxxxx>smallRNA(se3)
                                                                     xxxxxxxxxxxxxxxx>smallRNA(i)
                                                                     xxxxxxxxxxxxxxxxxx>smallRNA(se3)
                                                                     xxxxxxxxxxxxxxxxxx>smallRNA(si3)
                                                                     xxxxxxxxxxxxxxxx>smallRNA(s)
                                                                     xxxxxxxxxxxxxxxxxxx>smallRNA(le3)
                                                                     xxxxxxxxxxxxxxxx>smallRNA(se3)
                                                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)
                                                                     xxxxxxxxxxxxxxxxxx>smallRNA(s2)
                                                                     xxxxxxxxxxxxxxxx>smallRNA(fl3)
                                                                     *TSS --------->At4g35610
                                                                     xxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                                                                     xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
                                                                     xxxxxxxxxxxxxxxxxx>smallRNA(le3)
                                                                     xxxxxxxxxxxxxxx>smallRNA(fl3)
                ---------->DOF2                                      xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
         ------->GAMYB                          --------->YAB1       xxxxxxxxxxxxxxxxx>smallRNA(fl3)
       --------->At4g35610                   --------->YAB1          xxxxxxxxxxxxxxxxxxx>smallRNA(si3)
       ----------->RAV1(2)           <---------YAB1                  xxxxxxxxxxxxxxx>smallRNA(le3)
       <---------At4g35610         <---------ICU4              --------->DAG2                    <xx
       <---------ZAT2           <---------AHL20(2)  <------------CBF xxxxxxxxxxxxxxxxx>smallRNA(le3)
       --------->ZAT2          --------->AHL20(2) <---------YAB1    ----------->RAV1(2)         xxxx
------DOF2  ------>NtERF2   ----------->GT1------------>CBF   ---------->DOF2    <---------MYB46(3)
 
ttattttctcaactgcgcctaaagtcgcatacgattaaatattatcaacaataactattgttcaaaaaagcgcctgtagctcagtggatagagcgtctgt  18391500
                             --------->ZAT2
                             ----------->RAV1(2)
                            -------->P
                         xxxxxxxxxxxxxxx>smallRNA(si3)
                         xxxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                       xxxxxxxxxxxxxxxx>smallRNA(i)
                     xxxxxxxxxxxxxxxx>smallRNA(s)
                    xxxxxxxxxxxxxxxx>smallRNA(s)
                   xxxxxxxxxxxxxxxx>smallRNA(s)
                <---------DEAR3(2)
                <---------HSFB2a(1)
                <---------HSFC1(2)
                --------->HSFB2a(1)
                --------->HSFC1(2)
                <------MYB46(1)
                <------MYB83------>MYB46(1)
               <---------TOE1(2)
               <---------TOE2(2)  <---------ANAC46
             xxxxxxxxxxxxxxxxxxxx>smallRNA(l2)
             <---------SPL7 ------>MYB83
       xxxxxxxxxxxxxxxx>smallRNA(si3)
       xxxxxxxxxxxxxxx>smallRNA(si3)
       xxxxxxxxxxxxxxx>smallRNA(le3)
       xxxxxxxxxxxxxxxx>smallRNA(se3)
      xxxxxxxxxxxxxxxxx>smallRNA(se3)                                         ----------------->AGL1
      xxxxxxxxxxxxxxxxx>smallRNA(fl3)     <----------DOF2                 --------->GLK1(1)
     xxxxxxxxxxxxxxxx>smallRNA(fl3)   <---------CCA1(2)                  --------->ARR14(2)
     xxxxxxxxxxxxxxxxx>smallRNA(si3) <----------DOF2                     <---------GLK1(2)
    <xxxxxxxxxxxxxxxxsmallRNA(i)  <---------ANAC58                       <---------ARR14(2)
    xxxxxxxxxxxxxxxxx>smallRNA(se3)------>NtERF2                --------------->AGL15
   --------->At4g35610xxxxxxxxxxxxxxxx>smallRNA(s)              <---------------AGL15
   xxxxxxxxxxxxxxxxxxxx>smallRNA(s2)<------NtERF2<------------------------ANAC81
------>ZmHOX2a(1)  <-------TEIL   <---------ANAC58<------------------------ANAC81                ---
xxxxxxxxxxxxxxsmallRNA(i)xxxxxxxxxxxxxxxx>smallRNA(le3)        ----------------->AGL2           ----
xxxxxxxxxxxx>smallRNA(si3) <---------ALFIN1   ---------->ID1 <-----------GT1<-----------GT1    <----
 
ttcctaagcagaaggtcgtaggttcgacccctacctggcgcgtttctttgtttttttttttttttttccattttcagatttgccatatgtgagacactat  18391600
                                                                                   <---------MYB46(3)
                          <------MYB46(1)                                          ----------->GT1
                          ----------->GT1                                       <----------DOF2
                          <------MYB83                               <<<<<<<<<GATA-3
                  ----------->RAV1(1)                                <<<<<<<<<GATA-2
------->DOF2   --------->ANAC58                <---------TOE2(3)     <<<<<<<<<GATA-4               -
----->YAB1     --------->ANAC58          <---------YAB1              <<<<<<<<<GATA-1             ---
-----YAB1      --------->ANAC46          <---------AHL20(2)        --------->WOX13(1)            <--
 
aaaagtaactctcaactcaagcaacaatttggtttaatcgattttttattgtggtttgatggtttttgatcaatccactcagactttggttaatcttctt  18391700
                                 --------->ANAC46
           ----------->GT1 --------->ANAC58
       ---------->DOF2     --------->ANAC58          <---------LBD16
--------->DOF2             --------->ANAC46     <----------DOF2
------>HSFB2a(2)         <---------ALFIN1       <---------------AGL15                            ---
-------HSFB2a(2)       <---------ALFIN1   --------->GLK1(2)                --------->TOE2(3)   -----
 
ctcaaagtacaaaagagtttaaacacacacacgcacacagaagacaatcttctttttcagggactctcaactaaattacattaacccattacccatacaa  18391800
                                              <-----------GT1
                                          <---------AHL20(1)
                                  <----------DOF2
    <---------AHL20(2)--------->AHL20(2)  <---------ARR11(3)                  --------->ARR14(2)
----------->GT1      --------->AHL20(2)   --------->AHL20(2)                  <---------ARR14(2)
------>DAG2          --------->YAB1       --------->AHL20(1)                 <---------CCA1(2)     -
----->DOF2<---------YAB1      <---------GLK1(1)   <---------ICU4 ---------->DOF2              ------
 
aaggggtttaattttcatttacaataaaaatagatttctttgctatatattactcattaacctagagcaaaagagaagacatatctgagtaatagcaatg  18391900
                                                                                        <---------TOE2(3)
                                                                             --------->ARR14(2)
                                                                             --------->GLK1(2)
                      <---------At4g35610                                    <---------ARR11(1)
                      --------->At4g35610                                    <---------ARR14(2)
                     <---------ARR14(2)                                      ------->TEIL
         <---------AHL20(2)                ----------->HVH21                <---------GLK1(2)   ----
--------->DAG2       --------->ARR14(2)  <---------ICU4                 ------>ZmHOX2a(1)-----------
--------->DOF2   <---------TOE2(3)    <-----------GT1           --------->YAB1--------->HSFB2a(1) <-
--->ICU4 --------->AHL20(2)         <-----------GT1       --------->TOE2(3) <---------ARR14(1)  ----
 
cttaaagtgtcattaattctgaggtatctgaaaaccatttttcaccatgacctctagcaaaccctagtcatcatcctccgaatctgccattgatgtaaat  18392000
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AGI:  At1g49690.1   
Description:  pre-tRNA. tRNA-Arg (anticodon: CCT)
Range:  from: 18391470    to: 18391542    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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