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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
xx
xxx
xxx
<--
<xx
xxx
<xx
---
xxx
<---
xxxx
xxxx
xxxx
xxxx
xxxxx
<----
xxxxxxx
xxxxxxx
xxxxxxx
xxxxxxxx
<xxxxxxx
xxxxxxxxx
<xxxxxxxx
----------
xxxxxxxxxxx
xxxxxxxxxxx
<xxxxxxxxxx
<xxxxxxxxxxx
xxxxxxxxxxxxx
xxxxxxxxxxxxxx
xxxxxxxxxxxxxx
xxxxxxxxxxxxxxx
<xxxxxxxxxxxxxx
xxxxxxxxxxxxxxx
xxxxxxxxxxxxxxx
--------->
ZAT18
xxxxxxxxxxxxxxxx
<xxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxx
<xxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxx
smallRNA(i)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxx>
smallRNA(le3)
---------->
DOF2
xxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<xxxxxxxxxxxxxxxx
smallRNA(i)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
--------->
YAB1
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
xxxxxxxxxxxxxxxx>
smallRNA(i)
xx
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<---------
MYB46(3)
<xxxxxxxxxxx
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<------
ZmHOX2a(1)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<---------
TOE2(3)
<---------
AtMYB61
xxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
----------->
GT1
<---------
YAB1
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
------>
GT1
------->
TEIL
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
>
ATHB12
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
--------->
ICU4
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<
gttcaattggaaatgtatgtttaagcatgaattcgaaagtagatgatgtaattttgaggaatatgaaaattgatggtggaaatttaagggcccaaaagtc
18391100
<xxxxxxxxxxxxxxxx
smallRNA(i)
<---------
At4g35610
<---------
ZAT2
--------->
At4g35610
---------->
DOF2
<xxxxxxxxxxxxxxxxxx
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
----------->
HVH21
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxx>
smallRNA(i)
-------
LBD16
xxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
xxxxxxxxxxxxxx
smallRNA(i)
------>
LBD16
xxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
------
LBD16
xxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
xxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxx>
smallRNA(i2)
-----
LBD16
xxxxxxxxxxxxxxxx>
smallRNA(i)
xxxxxxxxxxxxxxxx>
smallRNA(le3)
xxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxx>
smallRNA(i)
xxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxx
smallRNA(i)
xxxxxxxxxxxxxx>
smallRNA(le3)
xxxxxxxx
smallRNA(i)
>
DOF2
--------->
ZAT2
xxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxx>
smallRNA(le3)
xxxxxxxxxxxxxx
smallRNA(fl3)
--------->
GLK1(2)
xxxxx
smallRNA(i)
<---------
ARR11(3)
xxx>
smallRNA(i)
--------->
GLK1(2)
xxxxxxxxx>
smallRNA(le3)
------->
GAMYB
<---------
ARR14(2)
xxxxxxxx>
smallRNA(le3)
------>
MYB83
--------->
ARR14(2)
xxxxxxxx>
smallRNA(i2)
--------->
AHL20(1)
-------->
P
<---------
GLK1(2)
xx
smallRNA(le3)
----------->
GT1
<xxxxxxxxxxxxxxxx
smallRNA(s)
--------->
ARR11(3)
xxxxxx>
smallRNA(si3)
<---------
AHL20(2)
------>
MYB46(1)
<---------
ARR11(3)
xxxxxxxx>
smallRNA(le3)
--------->
AHL20(2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxx>
smallRNA(le3)
--------->
AHL20(2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
xxxxx
smallRNA(si3)
<---------
AHL20(2)
--------->
DEAR3(1)
<---------
HSFB2a(1)
xxxxxxx>
smallRNA(fl3)
--------->
ICU4
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
x
smallRNA(se3)
--------->
GLK1(2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
<----------
DOF2
<
xxxxxxxxxxxxxx>
smallRNA(i)
xxxxxxxxxxxxxxxx>
smallRNA(i)
--------->
HSFB2a(1)
<xxxxx
xxxxxxxxxxxx
smallRNA(l2)
<---------
YAB1
--------->
At4g35610
<---------
HSFC1(2)
-------
xxxxxxxxx>
smallRNA(si3)
<---------
AHL20(2)
--------->
MYB46(3)
--------->
HSFC1(2)
<------
---------
DEAR3(1)
<---------
ATHB51
xxxxxxxxxxxxxxxxx>
smallRNA(se3)
<----------
DOF2
<---------
YAB1
cgggggtgaaagctgagaatcgaaataatttatgactcgaaaatcagccaacccaaaatctaatagaagattcttttcttctttttgttttttgattatc
18391200
--------->
TOE1(3)
<---------
ICU4
--------->
ICU4
--------->
YAB1
-------->
ATHB1
<---------
AHL20(2)
--------->
WRKY18(1)
--------->
ICU4
<-------
TEIL
<---------
TOE2(3)
--------->
ARR14(1)
<-----------
GT1
--------->
YAB1
--------->
CCA1(2)
--------->
AHL20(2)
--------->
TOE2(3)
--------->
ARR11(1)
----------->
GT1
<---------
ATHB51
--------->
ARR14(2)
----------
DOF2
<---------
AHL20(2)
<-----------
GT1
<---------
ARR14(2)
xxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<---------
YAB1
--------->
ARR11(3)
-->
ARR11(3)
<---------
MYB52(1)
<---------
ICU4
--------->
ZAT6
----------->
ARR10
---
ARR11(3)
<-------
GAMYB
--------->
AHL20(2)
---------->
DOF2
------->
TEIL
----------->
GT1
ttctttttctaggctgttatttaactaatgaaattattattaccttaattttaaagtctaaaactacatgaacttgtaagatacggtcaaactaaaaact
18391300
------>
NtERF2
--------->
bZIP60(2)
--------->
ANAC58
--------->
ANAC58
--------->
ANAC55(2)
--------->
ANAC58
--------->
ANAC46
--------->
ARR14(2)
<------
MYB83
<---------
ALFIN1
<---------
ALFIN1
--------->
ETT(2)
--------->
ICU4
<---------
ZAT6
----------->
HVH21
--------->
DEAR3(1)
<---------
ARR14(2)
--------->
MYB59
--------->
ALFIN1
<---------
GLK1(2)
<---------
ETT(2)
--------------->
AtSPL8
---------->
DOF2
--------->
ANAC58
--------->
YAB1
<---------
AHL20(2)
<---------
ANAC55(2)
<------
MYB46(1)
--------->
GLK1(2)
<----
acaagaatatcgcaccacgccattttttttgtctacagaatacgtttctttgtactaatttggttacagtgtaaaagaatgtgtgacacacattatgtct
18391400
<---------
At4g35610
xxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxx>
smallRNA(i)
xxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxx>
smallRNA(s)
xxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
xxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
xxxxxxxxxxxxxxxxxx>
smallRNA(s2)
xxxxxxxxxxxxxxxx>
smallRNA(fl3)
*
TSS
--------->
At4g35610
xxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxxxx>
smallRNA(le3)
xxxxxxxxxxxxxxx>
smallRNA(fl3)
---------->
DOF2
xxxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
------->
GAMYB
--------->
YAB1
xxxxxxxxxxxxxxxxx>
smallRNA(fl3)
--------->
At4g35610
--------->
YAB1
xxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
----------->
RAV1(2)
<---------
YAB1
xxxxxxxxxxxxxxx>
smallRNA(le3)
<---------
At4g35610
<---------
ICU4
--------->
DAG2
<xx
<---------
ZAT2
<---------
AHL20(2)
<------------
CBF
xxxxxxxxxxxxxxxxx>
smallRNA(le3)
--------->
ZAT2
--------->
AHL20(2)
<---------
YAB1
----------->
RAV1(2)
xxxx
------
DOF2
------>
NtERF2
----------->
GT1
------------>
CBF
---------->
DOF2
<---------
MYB46(3)
ttattttctcaactgcgcctaaagtcgcatacgattaaatattatcaacaataactattgttcaaaaaa
gcgcctgtagctcagtggatagagcgtctgt
18391500
--------->
ZAT2
----------->
RAV1(2)
-------->
P
xxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
xxxxxxxxxxxxxxxx>
smallRNA(i)
xxxxxxxxxxxxxxxx>
smallRNA(s)
xxxxxxxxxxxxxxxx>
smallRNA(s)
xxxxxxxxxxxxxxxx>
smallRNA(s)
<---------
DEAR3(2)
<---------
HSFB2a(1)
<---------
HSFC1(2)
--------->
HSFB2a(1)
--------->
HSFC1(2)
<------
MYB46(1)
<------
MYB83
------>
MYB46(1)
<---------
TOE1(2)
<---------
TOE2(2)
<---------
ANAC46
xxxxxxxxxxxxxxxxxxxx>
smallRNA(l2)
<---------
SPL7
------>
MYB83
xxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxx>
smallRNA(le3)
xxxxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxxxxx>
smallRNA(se3)
----------------->
AGL1
xxxxxxxxxxxxxxxxx>
smallRNA(fl3)
<----------
DOF2
--------->
GLK1(1)
xxxxxxxxxxxxxxxx>
smallRNA(fl3)
<---------
CCA1(2)
--------->
ARR14(2)
xxxxxxxxxxxxxxxxx>
smallRNA(si3)
<----------
DOF2
<---------
GLK1(2)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<---------
ANAC58
<---------
ARR14(2)
xxxxxxxxxxxxxxxxx>
smallRNA(se3)
------>
NtERF2
--------------->
AGL15
--------->
At4g35610
xxxxxxxxxxxxxxxx>
smallRNA(s)
<---------------
AGL15
xxxxxxxxxxxxxxxxxxxx>
smallRNA(s2)
<------
NtERF2
<------------------------
ANAC81
------>
ZmHOX2a(1)
<-------
TEIL
<---------
ANAC58
<------------------------
ANAC81
---
xxxxxxxxxxxxxx
smallRNA(i)
xxxxxxxxxxxxxxxx>
smallRNA(le3)
----------------->
AGL2
----
xxxxxxxxxxxx>
smallRNA(si3)
<---------
ALFIN1
---------->
ID1
<-----------
GT1
<-----------
GT1
<----
ttcctaagcagaaggtcgtaggttcgacccctacctggcgcg
tttctttgtttttttttttttttttccattttcagatttgccatatgtgagacactat
18391600
<---------
MYB46(3)
<------
MYB46(1)
----------->
GT1
----------->
GT1
<----------
DOF2
<------
MYB83
<<<<<<<<<
GATA-3
----------->
RAV1(1)
<<<<<<<<<
GATA-2
------->
DOF2
--------->
ANAC58
<---------
TOE2(3)
<<<<<<<<<
GATA-4
-
----->
YAB1
--------->
ANAC58
<---------
YAB1
<<<<<<<<<
GATA-1
---
-----
YAB1
--------->
ANAC46
<---------
AHL20(2)
--------->
WOX13(1)
<--
aaaagtaactctcaactcaagcaacaatttggtttaatcgattttttattgtggtttgatggtttttgatcaatccactcagactttggttaatcttctt
18391700
--------->
ANAC46
----------->
GT1
--------->
ANAC58
---------->
DOF2
--------->
ANAC58
<---------
LBD16
--------->
DOF2
--------->
ANAC46
<----------
DOF2
------>
HSFB2a(2)
<---------
ALFIN1
<---------------
AGL15
---
-------
HSFB2a(2)
<---------
ALFIN1
--------->
GLK1(2)
--------->
TOE2(3)
-----
ctcaaagtacaaaagagtttaaacacacacacgcacacagaagacaatcttctttttcagggactctcaactaaattacattaacccattacccatacaa
18391800
<-----------
GT1
<---------
AHL20(1)
<----------
DOF2
<---------
AHL20(2)
--------->
AHL20(2)
<---------
ARR11(3)
--------->
ARR14(2)
----------->
GT1
--------->
AHL20(2)
--------->
AHL20(2)
<---------
ARR14(2)
------>
DAG2
--------->
YAB1
--------->
AHL20(1)
<---------
CCA1(2)
-
----->
DOF2
<---------
YAB1
<---------
GLK1(1)
<---------
ICU4
---------->
DOF2
------
aaggggtttaattttcatttacaataaaaatagatttctttgctatatattactcattaacctagagcaaaagagaagacatatctgagtaatagcaatg
18391900
<---------
TOE2(3)
--------->
ARR14(2)
--------->
GLK1(2)
<---------
At4g35610
<---------
ARR11(1)
--------->
At4g35610
<---------
ARR14(2)
<---------
ARR14(2)
------->
TEIL
<---------
AHL20(2)
----------->
HVH21
<---------
GLK1(2)
----
--------->
DAG2
--------->
ARR14(2)
<---------
ICU4
------>
ZmHOX2a(1)
-----------
--------->
DOF2
<---------
TOE2(3)
<-----------
GT1
--------->
YAB1
--------->
HSFB2a(1)
<-
--->
ICU4
--------->
AHL20(2)
<-----------
GT1
--------->
TOE2(3)
<---------
ARR14(1)
----
cttaaagtgtcattaattctgaggtatctgaaaaccatttttcaccatgacctctagcaaaccctagtcatcatcctccgaatctgccattgatgtaaat
18392000
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AGI:
At1g49690.1
Description:
pre-tRNA. tRNA-Arg (anticodon: CCT)
Range:
from: 18391470
to: 18391542
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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