Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                           --------->LBD16                        <---------RAP2.6(2)                      <------ZmHOX2a(2)                     <---------ARR14(2)                  <------ZmHOX2a(2)                 --------->AGP1                                         <---------ICU4                 <---------ARR14(2)                                     --------->YAB1             <---------At4g35610          <---------YAB1       <----------DOF2         <-----------HVH21------>NtERF2 <---------ICU4      <-----------GT1             <---------AHL20(2)     <---------WOX13(1)------>ZmHOX2a(2)--------->ATHB12   <-----------GT1             --------->AHL20(2)   --------->ATHB12  --------->ARR14(2)--------->ICU4--------->YAB1    --------->ICU4  <---------AHL20(2)  <---------YAB1 --------->ARR14(2)   --------->TOE2(3)    <---------AHL20(2) <----------DOF2    <---   ttttgtgattgggtcaccagatcgatccggcctccgattacattattagtgattttcatatttaacttttgtattcattacttttatattttaattttag  17799600                                                                          --------->GLK1(2)                                                                      --------->YAB1                                                                      <---------ICU4                                                                     --------->ICU4                                                                     <---------YAB1                          <---------AHL20(2)                       --------->YAB1                  <-            <---------TOE2(3)              --------->DAG2    <<<<<<<<<WRKY18                      ---          ---------->DOF2 --------->AHL20(2)  --------->ALFIN1   --------->AHL20(2)               <-- ---ZmHOX2a(1) --------->ALFIN1          ---------->DOF2<---------At4g35610          <---------TOE2(3)   gaacatgcttaataaaggtggagtttttttaaatattcaaaaaaaaaggtggagtttttgctgtcaaaataataataatctaattttaagaaaacgactt  17799700                                                                                                   <-                                                                                                  <--                                                                                               <-----                                                                                               ------                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                               <-----                                                                                              <------                                                                                              <------                                                                                         --------->ANAC55(2)                                                                                         <---------ANAC55(2)                                    <---------AHL20(2)                                   ----------->GT1                                    --------->AHL20(2)                             <---------AHL20(2)                           --------->AHL20(2)                      --------->AHL20(2)  --------->AHL20(2)              <---------YAB1    ----------->GT1       --------->AHL20(1)           --------->AHL20(2)             <---------TOE2(3) <---------YAB1         <---------AHL20(2)         --------->TOE2(3)--- ----------HVH21           <---------AHL20(2)         <---------AHL20(1)       --------->ICU4 ------- ------>bZIP60(1)       <---------ARR11(3)            --------->AHL20(2)   --------->ANAC46 --------- -------bZIP60(1)       --------->ARR11(3) ------->TEIL            <---------AHL20(2)  <---------AHL20(2)   atgtcacatgtagtttatgttaagaagatttatatgattaaaatgtatttatctaaaatattagcaaaataaaatccactaaatattaattaagtaataa  17799800 --------AHL20(2) -------AHL20(2) ---HAHB4                         <---------YAB1 --->YAB1                        --------->AHL20(2) ---ATHB1                        <---------AHL20(2) --->ATHB51                      <---------AHL20(1)                              <---------YAB1 -->HAHB4                   <---------ARR11(3)                                 --------->YAB1 ----ICU4                   --------->ARR11(3)                               <---------TOE2(3) ---YAB1    --------->AHL20(2)  --------->YAB1          <---------YAB1      ---------->DOF2 ---ATHB51  <---------AHL20(2) <---------YAB1         <---------ICU4      <---------YAB1 ------>AHL20(2)        <---------ICU4                --------->YAB1   --------->ICU4 -->ICU4--------->AHL20(2)<---------YAB1    --------->AHL20(2)       --------->YAB1 >YAB1--------->AHL20(2)--------->YAB1      <---------AHL20(2)      --------->AHL20(2)  --------->ARR11(3)   ttaaatgaaaaaatataaatatagcatcatgatattataattttgtttaaatacaattataactaaaacaataaatattaaagatgatactatctttctt  17799900                                                                                               ------                                                                                             --------                                                                                            <--------                                                                                     --------->ANAC58                                                                                     --------->ANAC58                                             --------->AHL20(2)                  --------->ANAC58                                            --------->AHL20(1)                   --------->ANAC46                                            <---------AHL20(1)                   --------->AtLEC2                                      ----------->GT1                            --------->ANAC58                                     <---------HSFB2a(2)                      <-------TEIL <---------AHL20(1)                            <---------ARR11(3)                            <---------------AtSPL8                            --------->ARR11(3)                       --------->CCA1(2)     --------->AHL20(1)                  ------------>CBF   --------->HSFB2a(2)            --------->ARR11(3)     --------->AHL20(2)            <-----------GT1 <---------GLK1(2)----------->TBP        <---------ARR11(3)------------>CBF   caaaacatgtcattttagtattcaatgctagattttcttctggtaatatatatagattataggtagaagagatatacaagtacatgcaaacaatataata  17800000                                                                    --------->TOE2(3)                                                                   <---------YAB1                                                                  <---------ARR11(3)                                                                  --------->ARR11(3)                                                            <---------At4g35610                                                         <---------ZAT18    *TSS                                  <-----------RAV1(2)    --------->YAB1 <------ZmHOX2a(1)                  --------->ARR14(2)   --------->ZAT18 --->ZAT6                        --------->HSFB2a(2)     <---------ZAT14                <---------At4g35610 ->YAB1                          <---------HSFB2a(2)     --------->ZAT14                --------->At4g35610 -YAB1 ----------->GT1          <---------LBD16         --------->ALFIN1             <---------MYB52(1)   ctaggagaagagaaaatatgtctgaagaaaaattcccagaacgtccaggcgaaccagagtgcagctattatcttagaactggaaactgttatctgaaaca  17800100                                                                                                   <-                                                                                                   --                                                                                                  ---                                                                                                  ---                                                                                                  ---                                                                                       --------->ANAC58                                                 ------->TEIL     <---------ANAC58     --------->ANAC58                                             --------------->AtSPL8   <---------YAB1   --------->ANAC46                  --------->LBD16        --------->TOE2(3)--------->YAB1            --------->WRKY18(1)             <---------ALFIN1    ------>NtERF2 --------->ZAT14    <---------ANAC58 <-----------HVH21           <-----------HVH21    --------->DEAR3(1)       ----------->HVH21    --------->ARR11(3) <---   aaactgcaaataccatcacccgaagaatataacgccgagcgagcctcaatgtactctcaatgacaagggcttaccattaagacctggtcaagccatttgc  17800200                                       ----------->GT1                  ------>ZmHOX2a(1)                                     <---------ANAC46              --------->YAB1                                 --------->SPL7                 --------->YAB1                            ------>ZmHOX2a(2)                   ------->GAMYB                           <------ZmHOX2a(2)                   --------->MYB46(3)    --------->ZAT14        --------->ARR14(1)                ------>MYB83 <----------DOF2           --------->CCA1(2)                 --------->MYB52(1) -----NtERF2              <---------ARR14(2)                 ------>MYB46(1) ------->LBD16            --------->ARR14(2)               <---------MYB46(2)           <---------AHL20(2) ------>ANAC58            --------->ARR11(3)               <---------MYB111(1)       ----------->GT1 ------>ANAC46            --------->AGP1                   <---------MYB59           --------->YAB1 ------>ANAC58           <---------GLK1(1)                --------->ANAC55(2)       <---------ATHB12 ------LBD16             <---------At4g35610            <-----------GT1--------->TOE2(3)--------->AHL20(2)   ccgcattacagtcgcttcggcatttgcagatccggtccgacttgtaaattcgaccattttacctaaccatcatcctcaacttgcaaatgataaatttgaa  17800300              <---------ANAC58              <---------ANAC58              <---------ANAC46                                                                 <-----         <---------CCA1(2)                                                                 <---------TOE1(3)        ------>ZmHOX2a(1)                --------->ARR11(3)                        <---------YAB1 ---       <---------ANAC58       --------->AHL20(2)                              ----------->GT1 -------       <---------ANAC58       --------->YAB1           <-----------GT1      =========================       --------->TOE2(3)     <---------ATHB12     <---------AHL20(2)    ---------->DOF2    <---------TOE2(3)  <----------TaMYB80<---------AHL20(2)   <---------ARR11(3) <----------DOF2 <------ZmHOX2a(1)<------ZmHOX2a(1)   actgatattccttatctcgtgtttattttcaataatattctaatatctatgttttatttactctttatatgtatgaaaggatgttattaatctaaggatc  17800400                                                                      ------->GAMYB                                                                     --------->MYB46(3)                                                                     <---------MYB52(2)                                                                     <---------MYB111(2)                                                                     <---------MYB55(2)                                                                   ----------->RAV1(1)     --------->YAB1                                                ------>MYB46(1)       ============  --------->WOX13(1)                                             <---------MYB59         ------------ -ZmHOX2a(2)                                                     --------->MYB46(3) <---------ANAC58 -------->GT1                  --------->ANAC55(2)            <-----------GT1       <---------ANAC58 -->ARR11(3)           <---------YAB1               <----------DOF2------>MYB83<----------DOF2 =HOX2a_HOX2a         <-----------GT1            <-----------GT1--------->ANAC46   ---------->ID1   aagttaatcaccatggtatcaaattttcatttcatgtaacaaaattggatttttcttttcaagtttacccaacaaacaaggctttgtcgtctccaaattt  17800500  Previous    Next  AGI:  At1g48195.1    Description:  zinc finger (CCCH-type) family protein. similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT3G48440.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64177.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) Range:  from: 17800004    to: 17800453    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g48200.1    Description:  similar to unnamed protein product [Vitis vinifera] (GB:CAO61860.1) Range:  from: 17800433    to: 17802006    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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