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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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      --------->KAN4(2)                                                               --------->ARR11(3)
     --------->HSFB2a(1)                                                   <----------DOF2
     <---------HSFB2a(1)                                                  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
    --------->ARR14(2)                                                  <---------AHL20(1)
    <---------ARR14(2)                                                  <---------ARR11(3)
   ------>NtERF2                                                        --------->ARR11(3)
  <---------ZAT18                            --------->TOE2(3)         --------->CCA1(1)
 <---------ANAC46               <---------ATHB12---------->DOF2        --------->RVE1(1)    <xxxxxxx
--------->At4g35610       <-----------GT1    --------->TOE1(3)    --------->YAB1    ------->TEIL   -
<---------At4g35610      <-----------GT1   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) --------->AtLEC2<--
-------->MYB52(1)    <---------MYB52(1)   <---------ALFIN1        --------->TOE2(3)xxxxxxxxxxxxxxxxx
 
agtagcggacattcttactaatccgttatttccccatcaattcgaacaccttaaatccaagatgagcattcttaatatcttttcatgcacatcttgaggg  17527400
                                                                ----------->GT1
                                                              ---------->DOF2
                                                           ----------->GT1
       --------->CCA1(2)            <------MYB46(1)        <---------ZAT6
      <---------ARR14(2)            <------MYB83         ----------->GT1                        <---
      --------->ARR14(2)            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                      <-----
xxxxxxxxxxxxxxxxsmallRNA(s2)    xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                       --------->YAB1
--------->TaMYB80         <------MYB83                 --------->ZAT14                   <--------HAHB4
----NtERF2  ------->TEIL  <------MYB46(1)              <---------ZAT14                 --------->GLK1(2)
xxxxx>smallRNA(fl3)   --------->MYB52(2)       >>>>>>>>>>>>>>>>>LFY     --------->ANAC46 <---------ICU4
 
ggcatatcagatatgtatattggtttagttggtattagttggtttagtagaaccattgtatagtgtaaagtatataagacatttgtacagaatcatttta  17527500
                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)
                                   <----------DOF2
                               ------->GAMYB
                      --------->ARR14(2)
                      <---------ARR11(3)                             <---------AHL20(2)
                      --------->ARR11(3)  <xxxxxxxxxxxxxxxxsmallRNA(i)
                --------->YAB1<---------MYB52(2)             <--------ATHB1
                <xxxxxxxxxxxxxxxxxxxxsmallRNA(l2)            -------->HAHB4
             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)           <---------ATHB51
         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)              --------->ICU4
         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)               <---------ATHB12
        ---------->DOF2       --------->MYB46(3)       --------->LBD16 <-----------GT1
        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------CCA1(2)  <---------AHL20(2)
       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
    --------->YAB1   --------->CCA1(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
<---------AHL20(2)   --------->RVE1(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       <-----------GT1
--------->AHL20(2)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  --------->YAB1<---------TOE2(3)  <--------
------YAB1--------->DAG2 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------ICU4   --------->AHL20(2)
------GT1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         <---------At4g35610  ----------->GT1---------
 
caattaatgagaaaaggcttcataatatcttcaacaaacttttctctcatctctattccgctaataattcattttaacgaagtaaatactatttttaaat  17527600
                                                                                          ----------
                                                                                    --------->HSFB2a(2)
                                                                                    <---------HSFB2a(2)
                                                                              --------->AHL20(2)
                                                                              <---------AHL20(2)
                                                                             <---------AHL20(2)
                                              <---------AHL20(2)             --------->AHL20(2)
                                              --------->AHL20(2)             <---------AHL20(1)   --
                               <---------AHL20(2)                         <---------AHL20(2)      <-
                              <---------AHL20(2)                          --------->AHL20(2)      --
                         <---------AHL20(2)  <---------AHL20(2)           --------->AHL20(1)      <-
   --------->YAB1     ----------->GT1        --------->ICU4              <---------AHL20(2)      ---
-AHL20(2)  <-----------GT1    --------->AHL20(2)                         --------->AHL20(2)---------
>AHL20(2)<---------AHL20(2)   --------->AHL20(1)<---------YAB1--------->AHL20(2)<---------YAB1   <--
 
ccactctcatattttaaccattttttagttaaatttaatatagaagaaattatttttaaaaaaaactaaatatgaattaaattatttttagaaggggaaa  17527700
   <---------AHL20(2)
   --------->AHL20(2)
  --------->AHL20(2)     <---------AHL20(2)
  <---------AHL20(2)     --------->AHL20(2)
->GT1                   --------->AHL20(2)
------->AHL20(2)     <---------AHL20(2)
--------AHL20(2)     --------->AHL20(2)                                    --------->bZIP60(2)
------->AHL20(1)    <---------ATHB12 --------->At4g35610                   --------->ANAC46
--------AHL20(1)  --------->WOX13(1) <---------At4g35610          <---------AHL20(2)
------>AHL20(2) ------------>CBF--------->DAG2                    ----------->TBP
-->GT1 <-------TEIL --------->AHL20(2) ------->GAMYB            ----------->TBP  <---------ALFIN1
-------AHL20(2)------->TEIL   ---------->DOF2         ---------->DOF2 <-----------GT1
 
ataaattaaattcatatgtatcaattaataaataaaaggcaactgaaaaaaacgtctaaaagcctctatataaaaaccacatcaccactctcacaacatc  17527800
                                                                                          <---------MYB59
                                                                                       ------>MYB83
                                                                                       ------>MYB46(1)
                                                                                     --------->AtMYB61
                                                                                     <---------MYB59
                                                                                <---------DEAR3(2)
                                                                              <------NtERF2
                                                                             <-----------HVH21
                                                                             ------>NtERF2--------->AtMYB61
                                                                             <---------RAP2.6(3)
                                                                             <---------SPL7
          <----------DOF2                                                   <---------ANAC58    ----
    *TSS  <---------DAG2                                                    <---------ANAC58------>MYB46(1)
    <----------DOF2                                                         <---------ANAC46------>MYB83
 
cccttctctttcgctttctctcttctctcttctctccattaacttctctctcgttttctcatactctcaacttaatatgccgtcggaaccaaaccaaacc  17527900
                                    --------->DEAR3(1)
                                    --------->ANAC46
                                    --------->RAP2.6(2)
                                    --------->DREB2C(2)
                                    ------->GAMYB
                                   --------->DEAR3(2)
                                  ------>MYB46(1)
                                  ------>MYB83
                                  <---------ATERF1(1)
                                 --------->MYB55(1)
                                 --------->ANAC46
                                 <---------ALFIN1
                                <---------MYB55(2)
                              -------->P
                           <---------ANAC58
                           <---------ANAC58
                          --------->At4g35610
                          <------NtERF2
                          <---------At4g35610                                               <-------
  --------->MYB52(1)     ------>NtERF2    <---------ARR14(2)                         --------->AtMYB61
  ------>MYB83          <---------RAP2.3(3)                                          <---------ALFIN1
  ------>MYB46(1)       <---------RAP2.3(2)                                       --------->DEAR3(1)
  ----------->RAV1(1)   <---------DEAR3(1)--------->ARR14(2)                      --------->AtMYB61
  -------->P            <---------RAP2.6(2)                                       <---------ALFIN1
 <---------ALFIN1     ------->GAMYB--------->MYB46(3)                            --------->MYB46(3)
<---------MYB55(2)   <---------DEAR3(1)   --------->GLK1(2)        ------>ZmHOX2a(1)--------->MYB46(3)
--------->MYB46(3) --------->MYB52(1)------>NtERF2          <---------ANAC58   --------->ANAC46
----->ANAC46 <---------At4g35610--------->MYB46(3)          <---------ANAC58   <---------ALFIN1  <--
 
cgacccaccagagttcagccctcaacggcggcttacccaccgccaaatctggctgagcctcttccttgtcctcgctgcaactccaccaccaccaagttct  17528000
                                                                                              <-----
                                                                                              <-----
                                                                                    <---------ANAC58
                                                                                    <---------ANAC58
                                                                                    ================
                                                                                    <---------bZIP60(1)
                                                                                    <---------O2 ---
                                                                                    --------->O2<---
                                                                                    --------->TGA1a
                                                                                    <---------bZIP60(2)
                                                                                    --------->TGA2(1)
                                                                                    --------->bZIP60(1)
                                                                                    <---------TGA1a
                                                      <---------MYB52(1)            <---------TGA2(1)
                                                     =========================================MYC_MYB
                                                     <-------GAMYB                <---------TGA2(2)
                                                     <-----------HVH21           <---------MYB52(1)
                                                     --------->At5g28300         ----------->HVH21
                                                   <------NtERF2                --------->LBD16 <---
                                                   --------->RAP2.3(1)          <-----------HVH21<--
                                                  ------>NtERF2                <---------ANAC55(2)
                                                 --------->DEAR3(1)            --------->ANAC55(2)
                                          --------->ARR11(3)                   <---------ANAC58 ----
                                          <---------ARR11(3)             --------->ZAT18     <------
                                          --------->ARR14(2)             --------->ZAT14     <------
                                          <---------ARR14(2)             <---------ZAT18     <------
                                          <---------ARR11(1)             <---------ZAT14 <------NtERF2
                                          <-----------ARR10<---------ZAT18     <---------ANAC58<----
      --------->MYB46(3)                  --------->GLK1(2)--------->ZAT14  --------->ANAC46 <------
   --------->REM1(1)        --------->ANAC58     --------->ATERF1(2) <---------------AtSPL8<--------
--ARR11(3)--------->YAB1    --------->ANAC58     <---------ATERF1(2) --------->ALFIN1<---------SPL7
-------MYB52(1)       ---------->CDC5    <---------CCA1(2) <---------ZAT14<---------ALFIN1--------->ANAC46
 
gttactacaacaactataacctcgctcagcctcgctactactgcaaatcttgccgccgttactggactcaaggtggtacactccgtgacgtccccgtcgg  17528100
       <-----------HVH21
----DEAR3(2)             <-----------HVH21                                               -----------
----MYB46(3)             <-----------TGA1                                               --------->ANAC58
===MYC_MYB              --------->ANAC58                                                --------->bZIP60(2)
------>MYB55(2)         --------->bZIP60(2)                                             --------->ANAC58
------AtMYB61           --------->ANAC58             <---------ALFIN1                   --------->O2
------DEAR3(1)          --------->ANAC46             --------->AtMYB61                  --------->ANAC46
-------MYB46(3)        <-----------STF1             --------->bZIP60(2)               <---------ALFIN1
----->ALFIN1      ------>ZmHOX2a(1)         <---------ALFIN1                       --------->ANAC46
---DREB2C(2) --------->HSFC1(2)             --------->AtMYB61                      --------->AtMYB61
---MYB46(3)  <---------HSFC1(2)            --------->MYB46(3)              <-----------HVH21
---At1g77200 --------->HSFB2a(1)         --------->ANAC46      ------>ZmHOX2a(1)  --------->MYB46(3)
---GAMYB     <---------At4g35610         <---------ALFIN1------>ZmHOX2a(1) <-----------TGA1    -----
---DEAR3(1)  <---------HSFB2a(1)   <----------DOF2 ------>NtERF2          --------->ANAC55(2)  -----
---HVH21     <---------ZAT2     <---------MYB52(1)<---------ALFIN1------>ZmHOX2a(1)<---------ALFIN1
 
tggtggaactcgtcgaagctcctcaaaacgtcaccgttctttctccaccactgccacctcctcttcctcctcttcttccgtcatcaccaccacgacacaa  17528200
      --------->ANAC58
      --------->TGA1a
      --------->ANAC58                                          <----------DOF2                  <--
      --------->O2                                             <---------ANAC58                  <--
  ------>MYB46(1)                      <---------AHL20(2)      <---------ANAC58                 <---
  ------>MYB83                         --------->AHL20(2)  <----------DOF2<------MYB46(1)       <---
 --------->ANAC46                     <---------AHL20(1) --------->HSFC1(2)                     <---
 --------->ANAC58                     <---------AHL20(2) <---------HSFC1(2)      <------ZmHOX2a(1)<-
 --------->ANAC58                     --------->AHL20(2) <---------HSFB2a(1)   <---------TOE2(3)<---
>RAV1(1)                    ----------->GT1      --------->WRKY18(1)      <------MYB83         -----
---->ANAC58                <---------TOE1(3)    <-----------HVH21        --------->MYB59       <----
---->ANAC58<---------ZAT14 <---------TOE2(3)   <---------At4g35610     <---------MYB52(1)     <-----
 
gaaccagccacgactgaagcgagtcaaactaaggttactaatttaatttcaggtcatggaagctttgcttctctgttaggtttaggaagtggaaatggtg  17528300
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AGI:  At1g47650.1   
Description:  transposable element gene. copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)
Range:  from: 17523300    to: 17527397    Orientation: Forward
Links:  TAIR  MIPS 
 
AGI:  At1g47655.1   
Description:  Dof-type zinc finger domain-containing protein. Identical to Dof zinc finger protein DOF1.6 (DOF1.6) [Arabidopsis Thaliana] (GB:Q9SX97); similar to Dof-type zinc finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G60200.1); similar to unknown [Populus trichocarpa] (GB:ABK94982.1); contains InterPro domain Zinc finger, Dof-type; (InterPro:IPR003851)
Range:  from: 17527805    to: 17528746    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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