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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
KAN4(2)
--------->
ARR11(3)
--------->
HSFB2a(1)
<----------
DOF2
<---------
HSFB2a(1)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
--------->
ARR14(2)
<---------
AHL20(1)
<---------
ARR14(2)
<---------
ARR11(3)
------>
NtERF2
--------->
ARR11(3)
<---------
ZAT18
--------->
TOE2(3)
--------->
CCA1(1)
<---------
ANAC46
<---------
ATHB12
---------->
DOF2
--------->
RVE1(1)
<xxxxxxx
--------->
At4g35610
<-----------
GT1
--------->
TOE1(3)
--------->
YAB1
------->
TEIL
-
<---------
At4g35610
<-----------
GT1
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
--------->
AtLEC2
<--
-------->
MYB52(1)
<---------
MYB52(1)
<---------
ALFIN1
--------->
TOE2(3)
xxxxxxxxxxxxxxxxx
agtagcggacattcttactaatccgttatttccccatcaattcgaacaccttaaatccaagatgagcattcttaatatcttttcatgcacatcttga
ggg
17527400
----------->
GT1
---------->
DOF2
----------->
GT1
--------->
CCA1(2)
<------
MYB46(1)
<---------
ZAT6
<---------
ARR14(2)
<------
MYB83
----------->
GT1
<---
--------->
ARR14(2)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<-----
xxxxxxxxxxxxxxxx
smallRNA(s2)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
--------->
YAB1
--------->
TaMYB80
<------
MYB83
--------->
ZAT14
<--------
HAHB4
----
NtERF2
------->
TEIL
<------
MYB46(1)
<---------
ZAT14
--------->
GLK1(2)
xxxxx>
smallRNA(fl3)
--------->
MYB52(2)
>>>>>>>>>>>>>>>>>
LFY
--------->
ANAC46
<---------
ICU4
ggcatatcagatatgtatattggtttagttggtattagttggtttagtagaaccattgtatagtgtaaagtatataagacatttgtacagaatcatttta
17527500
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<----------
DOF2
------->
GAMYB
--------->
ARR14(2)
<---------
ARR11(3)
<---------
AHL20(2)
--------->
ARR11(3)
<xxxxxxxxxxxxxxxx
smallRNA(i)
--------->
YAB1
<---------
MYB52(2)
<--------
ATHB1
<xxxxxxxxxxxxxxxxxxxx
smallRNA(l2)
-------->
HAHB4
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<---------
ATHB51
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
--------->
ICU4
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<---------
ATHB12
---------->
DOF2
--------->
MYB46(3)
--------->
LBD16
<-----------
GT1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<---------
CCA1(2)
<---------
AHL20(2)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
--------->
YAB1
--------->
CCA1(1)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<---------
AHL20(2)
--------->
RVE1(1)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<-----------
GT1
--------->
AHL20(2)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
--------->
YAB1
<---------
TOE2(3)
<--------
------
YAB1
--------->
DAG2
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<---------
ICU4
--------->
AHL20(2)
------
GT1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<---------
At4g35610
----------->
GT1
---------
caattaatgagaaaaggcttcataatatcttcaacaaacttttctctcatctctattccgctaataattcattttaacgaagtaaatactatttttaaat
17527600
----------
--------->
HSFB2a(2)
<---------
HSFB2a(2)
--------->
AHL20(2)
<---------
AHL20(2)
<---------
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(1)
--
<---------
AHL20(2)
<---------
AHL20(2)
<-
<---------
AHL20(2)
--------->
AHL20(2)
--
<---------
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(1)
<-
--------->
YAB1
----------->
GT1
--------->
ICU4
<---------
AHL20(2)
---
-
AHL20(2)
<-----------
GT1
--------->
AHL20(2)
--------->
AHL20(2)
---------
>
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(1)
<---------
YAB1
--------->
AHL20(2)
<---------
YAB1
<--
ccactctcatattttaaccattttttagttaaatttaatatagaagaaattatttttaaaaaaaactaaatatgaattaaattatttttagaaggggaaa
17527700
<---------
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
->
GT1
--------->
AHL20(2)
------->
AHL20(2)
<---------
AHL20(2)
--------
AHL20(2)
--------->
AHL20(2)
--------->
bZIP60(2)
------->
AHL20(1)
<---------
ATHB12
--------->
At4g35610
--------->
ANAC46
--------
AHL20(1)
--------->
WOX13(1)
<---------
At4g35610
<---------
AHL20(2)
------>
AHL20(2)
------------>
CBF
--------->
DAG2
----------->
TBP
-->
GT1
<-------
TEIL
--------->
AHL20(2)
------->
GAMYB
----------->
TBP
<---------
ALFIN1
-------
AHL20(2)
------->
TEIL
---------->
DOF2
---------->
DOF2
<-----------
GT1
ataaattaaattcatatgtatcaattaataaataaaaggcaactgaaaaaaacgtctaaaagcctctatataaaaaccacatcaccactctcacaacatc
17527800
<---------
MYB59
------>
MYB83
------>
MYB46(1)
--------->
AtMYB61
<---------
MYB59
<---------
DEAR3(2)
<------
NtERF2
<-----------
HVH21
------>
NtERF2
--------->
AtMYB61
<---------
RAP2.6(3)
<---------
SPL7
<----------
DOF2
<---------
ANAC58
----
*
TSS
<---------
DAG2
<---------
ANAC58
------>
MYB46(1)
<----------
DOF2
<---------
ANAC46
------>
MYB83
ccct
tctctttcgctttctctcttctctcttctctccattaacttctctctcgttttctcatactctcaacttaat
atgccgtcggaaccaaaccaaacc
17527900
--------->
DEAR3(1)
--------->
ANAC46
--------->
RAP2.6(2)
--------->
DREB2C(2)
------->
GAMYB
--------->
DEAR3(2)
------>
MYB46(1)
------>
MYB83
<---------
ATERF1(1)
--------->
MYB55(1)
--------->
ANAC46
<---------
ALFIN1
<---------
MYB55(2)
-------->
P
<---------
ANAC58
<---------
ANAC58
--------->
At4g35610
<------
NtERF2
<---------
At4g35610
<-------
--------->
MYB52(1)
------>
NtERF2
<---------
ARR14(2)
--------->
AtMYB61
------>
MYB83
<---------
RAP2.3(3)
<---------
ALFIN1
------>
MYB46(1)
<---------
RAP2.3(2)
--------->
DEAR3(1)
----------->
RAV1(1)
<---------
DEAR3(1)
--------->
ARR14(2)
--------->
AtMYB61
-------->
P
<---------
RAP2.6(2)
<---------
ALFIN1
<---------
ALFIN1
------->
GAMYB
--------->
MYB46(3)
--------->
MYB46(3)
<---------
MYB55(2)
<---------
DEAR3(1)
--------->
GLK1(2)
------>
ZmHOX2a(1)
--------->
MYB46(3)
--------->
MYB46(3)
--------->
MYB52(1)
------>
NtERF2
<---------
ANAC58
--------->
ANAC46
----->
ANAC46
<---------
At4g35610
--------->
MYB46(3)
<---------
ANAC58
<---------
ALFIN1
<--
cgacccaccagagttcagccctcaacggcggcttacccaccgccaaatctggctgagcctcttccttgtcctcgctgcaactccaccaccaccaagttct
17528000
<-----
<-----
<---------
ANAC58
<---------
ANAC58
================
<---------
bZIP60(1)
<---------
O2
---
--------->
O2
<---
--------->
TGA1a
<---------
bZIP60(2)
--------->
TGA2(1)
--------->
bZIP60(1)
<---------
TGA1a
<---------
MYB52(1)
<---------
TGA2(1)
=========================================
MYC_MYB
<-------
GAMYB
<---------
TGA2(2)
<-----------
HVH21
<---------
MYB52(1)
--------->
At5g28300
----------->
HVH21
<------
NtERF2
--------->
LBD16
<---
--------->
RAP2.3(1)
<-----------
HVH21
<--
------>
NtERF2
<---------
ANAC55(2)
--------->
DEAR3(1)
--------->
ANAC55(2)
--------->
ARR11(3)
<---------
ANAC58
----
<---------
ARR11(3)
--------->
ZAT18
<------
--------->
ARR14(2)
--------->
ZAT14
<------
<---------
ARR14(2)
<---------
ZAT18
<------
<---------
ARR11(1)
<---------
ZAT14
<------
NtERF2
<-----------
ARR10
<---------
ZAT18
<---------
ANAC58
<----
--------->
MYB46(3)
--------->
GLK1(2)
--------->
ZAT14
--------->
ANAC46
<------
--------->
REM1(1)
--------->
ANAC58
--------->
ATERF1(2)
<---------------
AtSPL8
<--------
--
ARR11(3)
--------->
YAB1
--------->
ANAC58
<---------
ATERF1(2)
--------->
ALFIN1
<---------
SPL7
-------
MYB52(1)
---------->
CDC5
<---------
CCA1(2)
<---------
ZAT14
<---------
ALFIN1
--------->
ANAC46
gttactacaacaactataacctcgctcagcctcgctactactgcaaatcttgccgccgttactggactcaaggtggtacactccgtgacgtccccgtcgg
17528100
<-----------
HVH21
----
DEAR3(2)
<-----------
HVH21
-----------
----
MYB46(3)
<-----------
TGA1
--------->
ANAC58
===
MYC_MYB
--------->
ANAC58
--------->
bZIP60(2)
------>
MYB55(2)
--------->
bZIP60(2)
--------->
ANAC58
------
AtMYB61
--------->
ANAC58
<---------
ALFIN1
--------->
O2
------
DEAR3(1)
--------->
ANAC46
--------->
AtMYB61
--------->
ANAC46
-------
MYB46(3)
<-----------
STF1
--------->
bZIP60(2)
<---------
ALFIN1
----->
ALFIN1
------>
ZmHOX2a(1)
<---------
ALFIN1
--------->
ANAC46
---
DREB2C(2)
--------->
HSFC1(2)
--------->
AtMYB61
--------->
AtMYB61
---
MYB46(3)
<---------
HSFC1(2)
--------->
MYB46(3)
<-----------
HVH21
---
At1g77200
--------->
HSFB2a(1)
--------->
ANAC46
------>
ZmHOX2a(1)
--------->
MYB46(3)
---
GAMYB
<---------
At4g35610
<---------
ALFIN1
------>
ZmHOX2a(1)
<-----------
TGA1
-----
---
DEAR3(1)
<---------
HSFB2a(1)
<----------
DOF2
------>
NtERF2
--------->
ANAC55(2)
-----
---
HVH21
<---------
ZAT2
<---------
MYB52(1)
<---------
ALFIN1
------>
ZmHOX2a(1)
<---------
ALFIN1
tggtggaactcgtcgaagctcctcaaaacgtcaccgttctttctccaccactgccacctcctcttcctcctcttcttccgtcatcaccaccacgacacaa
17528200
--------->
ANAC58
--------->
TGA1a
--------->
ANAC58
<----------
DOF2
<--
--------->
O2
<---------
ANAC58
<--
------>
MYB46(1)
<---------
AHL20(2)
<---------
ANAC58
<---
------>
MYB83
--------->
AHL20(2)
<----------
DOF2
<------
MYB46(1)
<---
--------->
ANAC46
<---------
AHL20(1)
--------->
HSFC1(2)
<---
--------->
ANAC58
<---------
AHL20(2)
<---------
HSFC1(2)
<------
ZmHOX2a(1)
<-
--------->
ANAC58
--------->
AHL20(2)
<---------
HSFB2a(1)
<---------
TOE2(3)
<---
>
RAV1(1)
----------->
GT1
--------->
WRKY18(1)
<------
MYB83
-----
---->
ANAC58
<---------
TOE1(3)
<-----------
HVH21
--------->
MYB59
<----
---->
ANAC58
<---------
ZAT14
<---------
TOE2(3)
<---------
At4g35610
<---------
MYB52(1)
<-----
gaaccagccacgactgaagcgagtcaaactaaggttactaatttaatttcaggtcatggaagctttgcttctctgttaggtttaggaagtggaaatggtg
17528300
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AGI:
At1g47650.1
Description:
transposable element gene. copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)
Range:
from: 17523300
to: 17527397
Orientation: Forward
Links:
TAIR
MIPS
AGI:
At1g47655.1
Description:
Dof-type zinc finger domain-containing protein. Identical to Dof zinc finger protein DOF1.6 (DOF1.6) [Arabidopsis Thaliana] (GB:Q9SX97); similar to Dof-type zinc finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G60200.1); similar to unknown [Populus trichocarpa] (GB:ABK94982.1); contains InterPro domain Zinc finger, Dof-type; (InterPro:IPR003851)
Range:
from: 17527805
to: 17528746
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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