Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                 --------->AHL20(1)                                                                               <---------AHL20(1)                                                     --------->MYB52(1)        --------->ARR11(3)                                                   <---------MYB59             <---------ARR11(3)                                                  --------->ANAC55(2)         <---------AHL20(2)                    <---------RAP2.6(2)           --------->ANAC46        --------->AHL20(2)         <---------ANAC46   ---------->DOF2     <-----------GT1         --------->TOE1(3)   <-----------RAV1(1)<------NtERF2      ----------->GT1                <----------DOF2 ----->DOF2    <-----------RAV1(1)      --------->DAG2                  --------->TOE2(3) --------->AHL20(2)   aaggtatgttggctcgtatgtggccgcttgaaaagaattgaaaaggttttatacataactgatataaaacaaaactttaaatattttcaaaatcaaatag  16486300                                         --------->ATHB12                                        <------ZmHOX2a(2)                               <------------              --------->MYB46(3)        <---------YAB1             <------------------------ANAC81           --------->YAB1             <---------ARR14(1)         <---------AHL20(2)     -------------          <---------ATHB12           --------->LBD16            xxxxxxxxxxxxxxxx>smallRNA(i)        --------->WOX13(1)         <---------LBD16             <---------RVE1(1)       <------------- <---------ANAC46-------->P     <-------TEIL --------->YAB1   <---------ARR11(3)       -------------- <---------ANAC55(2)            <---------ZAT14               --------->ARR11(3)      <-----------GT1 <---------ANAC58------>MYB46(1)--------->ZAT14               <---------GLK1(2)     <---------GLK1(1) <---------ANAC58------>MYB83  <-----------HVH21      <------ZmHOX2a(2)             --------->GLK1(1)   atttcgtaaacaatcatccaacccgtttaatcggttcaccggatcattgatcatggatcaaatagatttttttttttttttttgggatttcccgttttag  16486400                              <---------MYB46(3)                              ----------->GT1                             <--------P                             <---------MYB55(1)                            <-------GAMYB                           <---------MYB46(3)                      <---------YAB1                <----------DOF2      <---------ICU4                    --------->YAB1          <---------ANAC58          --------->ANAC55(2) ---AGL15           <---------ICU4        --------->ARR11(3)          <---------ANAC55(2)         --- -->AGL15          <---------ATHB12       <---------ARR11(3)         <-------TEIL               ----- ----AG            --------->ICU4   <---------WOX13(1)           ----------->GT1            ------>ZmHOX2a(2) --->AGL2        --------->YAB1<-------GAMYB<---------ANAC58     --------->MYB52(2)  <----------DOF2   aattactgaatattagcagtaatcatgagcggttgttaattgaagttcttgtgtctttatattcgattagttacataattccttcaacttttgatccttg  16486500                                                                                                    <                                                                                                  ---                                                                                                  <--                                                                                             --------                                                                                             <-------                             <-----------RAV1(1)                                           <---------            <---------------AtSPL8                                                      <---------AHL20(2)            --------------->AtSPL8                                            <---------YAB1 <-------        <-----------GT1   --------->GLK1(2)                                <---------YAB1--------->AHL20(2)    <-------MYC3        <---------AHL20(2)                              <---------TOE2(3)<---------AHL20(2)    ------->MYC3       <---------AHL20(1)                          --------->LBD16  <---------YAB1--- ------>ETT(2)         --------->AHL20(2)        <---------YAB1 --------->MYB52(1)<---------ZAT6 <--- ---->REM1(2)          --------->AHL20(1)       --------->TOE2(3)<---------LBD16 <---------YAB1<-----   tagacacatgttacaatgtacaaaatataatctgttgaagtaaaccgaaacattattcaatgtgagaaccggataagattattagtattatttatttata  16486600 ------------CBF                                                                            ------>MYB46(1) ------>AHL20(1)                                                                            ------>MYB83 -------AHL20(1)                                                    <----------DOF2      <---------ANAC58 ->AHL20(2)               ----------->GT1                     --------->ANAC46           <---------ANAC58 --AHL20(2)               <------MYB46(1)                 ------>MYB46(1)                ----------->RAV1(2) --TBP                    <------MYB83                  <---------MYB59         --------------->AtSPL8 ----TBP      ----------->GT1                    ----------------------->TaNAC69(2)     -------->P  < ------>ARR11(3)         --------->MYB59    <---------TOE2(3) --------->bZIP60(2)      <-----------GT1 ------AHL20(2) --------->AHL20(2)      --------->GLK1(2) ------>MYB83 *TSS    --------------------->WRI1 ------TBP  ---------->DOF2         --------->HSFB2a(2) --------->AtMYB61   ------>ZmHOX2a(1)   <----   tatattgtttttttaaaagtaaataagttggtaaatatcgagaatataggttttcagaccaaacacatcactttggtcctacttagtacttacctgcccc  16486700                                                                        <------NtERF2                                                                        ----------->GT1                                                                       --------->LBD16                                                                       ------>NtERF2                                                                      <---------ANAC46                                                                      --------->LBD16                                                                     --------->ATERF1(1)                                                                     <---------LBD16                                                                     <------NtERF2                                                                    <---------ATERF1(1)                                                                    --------->ABI4(1)                                                                    ------>NtERF2                                                                   --------->DEAR3(1)                                                                   <---------DEAR3(1)                                                                   <---------ATERF1(2)                                                                   --------->RAP2.3(3)                                                 <------MYB83      --------->ATERF1(2)                                                 <------MYB46(1)  --------->RAP2.3(1)                                                <---------AtMYB61 --------->ERF1                                                --------->MYB59   --------->DEAR4(2)                                                --------->MYB111(1)--------->RAP2.3(2)                                               <---------MYB55(1) --------->ATERF1(1)             <--              --------------->AtSPL8           <--------P        <---------ATERF1(1)            ----- ---------ETT(2)    <----------DOF2           <---------MYB52(1)--------->ANAC46 --------->AHL20(2) -----ALFIN1<----------DOF2         --------->YAB1              <---------DEAR3(1)             <-----   tctcgacaaaatttcttttgtactttcacatttctctgtaataaactcggtaggtttgcgaaaacctcgccgccgggaaaaaaaaaaatcaatggaagga  16486800                                                                   <---------CCA1(2)                                                                  <---------ARR11(1)                                                                  --------->ARR14(2)                                                                  <---------ARR14(2)                                                                  ------->TEIL                                                                 <---------ARR14(1)                                                             <---------DOF5.7(2)                                                            <---------WRKY12                                                           --------->DOF5.7(2)                                                          <-----------HVH21                                                         <---------O2                                                         --------->ANAC46                                                         --------->ANAC58              <---------ATHB12                           --------->bZIP60(2)          <---------MYB59                                --------->ANAC58                        ----       <------ZmHOX2a(1)                                 --------->O2                       ---------      <----------ID1                                     --------->TGA1a              <---------ZAT18 <------ZmHOX2a(1)                                     <---------ALFIN1             <---------ZAT2 ----ZmHOX2a(1)      <---------GLK1(2)             <---------At4g35610        --------->DEAR3(1) <--- ---->ALFIN1------>MYB83                           --------->At4g35610  --------->YAB1--------->ZAT18 -ZmHOX2a(1)------>MYB46(1)                  ----------->RAV1(2) <---------CCA1(2)  --------->ZAT2   ggaggaagaggaccaaatcaaacgattctcagtgaaatagaacatatgcctgaagctccacgtcaacgtatctctcatcaccgtcgagctcgctctgaaa  16486900                                         <---------HSFB2a(1)                                         <---------HSFC1(2)                              =================HOX2a_HOX2a                                         --                          ------>ZmHOX2a(2)                                                        --                          ========================HOX2a_HOX2a                             <---------ALFIN1                         =========================HOX2a_HOX2a                             --------->DEAR3(1)                         --------->GLK1(1)                                                --------->AtMYB61                         <---------GLK1(1)                                               --------->MYB46(3)                        --------->ARR14(2)                                             --------->AtMYB61              <---------ATHB12------>ZmHOX2a(1)                                        <---------ALFIN1        --------->LBD16 <---------ARR14(2)                                             --------->DEAR3(1)        ------>NtERF2   --------->ARR11(3)             <---------GLK1(1)              --------->MYB46(3)       <---------DEAR3(1)<------ZmHOX2a(2)       --------->GLK1(1)                  <---------ALFIN1      <---------LBD16   <---------ARR11(3) ------>ZmHOX2a(1)                     --------->ANAC46 --- ----->HSFB2a(1)        <-----------ARR10--------->HSFC1(2)                     ------->GAMYB<------- -->HVH21<---------------------WRI1      --------->HSFB2a(1)               ------>ZmHOX2a(1) -------- ------HSFB2a(1)--------->WOX13(1)      <------ZmHOX2a(2)                 --------->TOE2(3)----------   ccttcttctccggcgaatcaatcgacgatctcctcttattcgatccttccgatatcgatttctcttctctagacttcctcaacgctccaccaccaccaca  16487000                    <---------GLK1(2)                   <---------HSFC1(2)              --------->ANAC58              --------->ANAC58              ------->GAMYB              --------->ANAC46            -------->P           --------->MYB55(1)           ------->GAMYB          <---------MYB52(2)                 --------->ANAC58  --------->YAB1   --------->HSFC1(2)   <---------LBD16 ------->WOX13(1) --------->ANAC58 <---------MYB52(1) ------->YAB1--------->MYB46(3)   <---------At4g35610      --------->SPL7 ------>MYB46(3)  --------->ANAC58<-------GAMYB           --------->MYB52(1) --ALFIN1 --------->MYB46(3)     <---------MYB46(3)      <---------SPL7    ------>ZmHOX2a(1)     ---- ->AtMYB61<---------MYB55(2)<---------TOE1(2)--------->ANAC58  --------->ALFIN1        ------>ZmHOX2a(1) ->RAV1(1)<---------MYB111(2) <-----------HVH21    --------->TOE2(3)    ------>ZmHOX2a(1)       -----   acaatcacaacaacaaccgcaagcttctcccatgtccgttgattcggaagaaacctcatcgaacggtgttgttcctcctaattctcttcctccaaaaccc  16487100              <------NtERF2            <---------ETT(2)            --------->ETT(2)            --------->ANAC58        --------->MYB59       <-------TEIL      --------->ARR14(1)  <---------ANAC58     --------->ARR14(2)   <---------ANAC58     <---------GLK1(2)   <---------HSFC1(2)     <---------ARR14(2)  --------->HSFC1(2)                 <---------ANAC46     --------->ARR11(1) <---------TOE1(2)                   <---------ANAC58   ----------->ARR10<-------TEIL            --------->GLK1(1)  <-------GAMYB                     <--- ----->LBD16--------->ANAC58      <---------MYB52(1)        <---------ANAC58----------->GT1   <------ ---->ANAC46--------->RAP2.6(2)  <-------GAMYB        --------->ATHB12  <------ZmHOX2a(1)     <------   gaagctagattcggtcgccatgttcgtagcttctcggttgattccgatttcttcgatgatttgggtgttactgaggagaagtttatagctacaagttcag  16487200  Previous    Next  AGI:  At1g43700.1    Description:  VIP1 (VIRE2-INTERACTING PROTEIN 1); transcription factor. similar to bZIP transcription factor (POSF21) [Arabidopsis thaliana] (TAIR:AT2G31370.5); similar to bZIP transcription factor (POSF21) [Arabidopsis thaliana] (TAIR:AT2G31370.4); similar to bZIP transcription factor (POSF21) [Arabidopsis thaliana] (TAIR:AT2G31370.1); similar to unknown [Populus trichocarpa] (GB:ABK96202.1); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827); contains InterPro domain Basic leucine zipper; (InterPro:IPR011700) Range:  from: 16486671    to: 16488681    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version