Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                    -------->ATHB1                                                  <--------HAHB4                                                  --------->ATHB51                                                  <---------ICU4                                                  --------->YAB1                                                 <---------ATHB51                                         <---------PCF5                                           <--                                         ------>NtERF2                                           ----                                        <-----------TCP11(1)                                     <---      --------->YAB1                    <---------ATERF1(1)--------->DAG2                        ----     <-------TEIL                     <---------LBD16     ---------->DOF2                        <--- ----->ANAC58                 <---------PCF2     --------->ICU4                                 <---- ----->ANAC58                <------MYB83--------->PCF2<---------ANAC55(2)                      ----- ---->DOF2                 --------->ALFIN1      <---------YAB1        --------->ARR11(3)  --------->At5g28300 --ATHB12    <-----------GT1 <------MYB46(1)----------->RAV1(1)    ---------->DOF2        -----------   agcaagtttcataagttaccacatattaagtgggtctgagcccggcccacaattattacataaagcccagaaagagctcgacggacttgagacggtaaat  11881400                       ------->GAMYB                      --------->MYB46(3)             --------->ATERF1(2)             <---------ATERF1(2)         <---------WOX13(1)                        <---------ANAC58   ----------->GT1--------->At4g35610              <---------GLK1(2) -------AHL20(2) --------->RAP2.6(2)               <---------ANAC58             <---------ATHB12 ----->AHL20(1)--------->ZAT2                <---------YAB1                     <<<<<<<<<ARR2  <----- ------AHL20(2)<------NtERF2                --------->AHL20(2)                --------->WOX13(1) ----->AHL20(2)<---------ZAT2             --------->ICU4                  <---------ETT(1) <---------DAG2 ------AHL20(1)--------->At4g35610   ----------->GT1                 --------->At4g35610   <--------- -----AHL20(2) <---------At4g35610  --------->ANAC58                 <---------At4g35610<---------ALFIN1 ---->AHL20(2)------>NtERF2         --------->ANAC58             --------->ARR14(2)  --------->ANAC46 >GT1  --------->MYB52(2)         --------->MYB52(1)             <---------ARR14(2) --------->MYB46(3)   taattttgttaattgccagcagcaacgacggacttcaaacggaaatttttatagcttctctcgttcagttctgcttccgacaatcaaacaccactttctt  11881500                                                 <---------At4g35610                                        ------>NtERF2                                        --------->LBD16                                       --------->RAP2.6(2)                                       --------->ANAC58                                       --------->ANAC58                                       --------->RAP2.3(2)                                       --------->ANAC46                                      ----------------->AGL1                                  <---------At4g35610                        <---------GLK1(2)        --------->At4g35610              <---------ARR14(2)  --------->ATHB12     --------->At4g35610 <---------ZAT2                         --------->GLK1(2) -----DOF2             <---------At4g35610 --------->ZAT2                         --------->ARR14(2) -DOF2   <---------GLK1(2)     <---------At4g35610  <-------TEIL   >>>>>>>ZML2   <---------GLK1(2)   tggatgatttggaatctctctgttcagcttctctgctactgccgcaactggagatgcataagtcgagttctagtttctgttcagaatctggagtctaatt  11881600               <---------ANAC58                                            <---------TOE1(2)               <---------ANAC58               --------->HSFB2a(2)         ------>ZmHOX2a(1)             <---------ARR14(2)               <---------HSFB2a(2)  <---------YAB1             --------->ARR14(2)               --------->HSFC1(1) <----------DOF2        --------->CCA1(2)                <---------ANAC58   <----------TaMYB80                  <----     ----------->HVH21                   <---------ANAC58   --------->GLK1(1)               <--------   <---------At4g35610                  <---------TOE1(2)   <---------GLK1(1)           <------------CBF   --------->At4g35610            <---------At4g35610       --------->CCA1(2)    <---------MYB46(3) <-----------RAV1(2)         ----------->RAV1(2)           ---------->TaMYB80    --------->MYB52(2)   tcttcaggtgatacggttcttgttcttgaaaccctgagctcttacgttctcgaatttgagggatatactttgattcctagggtttgttagaattgacgaa  11881700          <---------AHL20(2)          --------->AHL20(2)                                                                       --        <---------YAB1                                                                             ==        ----------->TBP                                                 <---------TOE2(3)         <--     <---------YAB1                                                     <---------TOE1(3)         ===    <-------GAMYB                                                    <--------P                  <---   ----------->GT1               <---------ANAC46                <---------ANAC46                ----   <---------MYB46(3)            <---------ANAC58               <---------LBD16                  ----  <--------P         <---------AHL20(2)                        --------->ALFIN1          ---------->DOF2 <-------GAMYB     <---------RVE1(1)                         <------------CBF <---------ANAC46   <--- --------CBF     <------ZmHOX2a(1)  <---------ZAT14   --------->YAB1<-------GAMYB    --------->At4g35610 -TOE2(3)--------->YAB1          <---------ANAC58    <---------YAB1<---------MYB46(3)--------->CCA1(2)   ttgggttgttataaaaataggattttttttaagttgtgtgtagtttaggcgaagaattatagaaattgggggttagggttttgtgagagatgaaaggaag  11881800                                <---------ARR14(2)                                --------->ARR14(2)                               --------->ATHB12                              <---------YAB1                        ------>ZmHOX2a(1)                      ------>ZmHOX2a(2)                      ================HOX2a_HOX2a                     =================HOX2a_HOX2a                     <------ZmHOX2a(2)            <---------------AtSPL3            <---------------AtSPL8  --------->ARR14(2)<---------GLK1(2)  <---------ARR14(2)<---------ARR14(2) ---->ZmHOX2a(2)    --------->ARR14(2)         <----------DOF2 ==============================HOX2a_HOX2a   ------->TEIL               <---------ANAC58 ----ZmHOX2a(2)  --------->ANAC58      <---------MYB46(3)               <---------ANAC58 ==============================HOX2a_HOX2a<---------WOX13(1)            <---------ANAC46 ------ARR14(2)  <---------ANAC55(2)   <---------AtMYB61       <---------YAB1 ----->ARR11(3)  --------->ANAC55(2)  <--------P           <---------ANAC58         <---------YAB1  < ----->ARR14(2)  --------->ANAC58    <-------GAMYB         <---------ANAC58   ----------->TGA1     -- ------ARR11(3) <---------LBD16<------ZmHOX2a(1)           <---------ANAC46  <---------WOX13(1)    <-   atcgtatcggttttcaagtacggatcctcatgaggattgggttgatggactttggactgtggattgtgtttgtggtgtgaatgacgatgatggaacagag  11881900                                                                                --------->ICU4                                                                                <---------YAB1                                                                         <---------ANAC58            --------->ATHB12                                             <---------ANAC58           --------->ICU4                                          <----------DOF2           <---------YAB1                                       --------->ARR11(3) -------GAMYB                <-------TEIL                       <---------ARR11(3) --------->GT1       <---------MYB46(3)                   <------ZmHOX2a(1)   --------->YAB1 --------MYB46(3)   <---------ANAC46                     <----------ID1<-----------GT1   atggttaaatgtgatgattgtggtgtttgggttcatactcgttgttctcgttttgttgaaggacaagagctttttacttgtcataagtgtaagagcaaga  11882000                                                                                            <--------                                                                                            <--------                                                                                           --------->ALFIN1                                                                                          -----------                                                  <---------ANAC58                       <---------ANAC46                                                  <---------ANAC58                 <---------REM1(2)                                         <---------ANAC46                        <---------ZAT18                                        <------MYB46(1)                          <---------ZAT14              --------->ZAT14           <---------MYB46(3)                       --------->ZAT14              <---------ZAT14           --------->MYB55(2)                    <---------ANAC58        --------->YAB1                  --------->MYB52(2)                    <---------ANAC58        -------->HAHB4                  <------MYB83                       <---------ARR14(2)       <---------YAB1               --------->MYB55(2)                     --------->ARR14(2)    <---      <---------TOE2(3)             <---------MYB46(3)                     --------->GLK1(2)---------  --------->YAB1           <--------P  <---------AtMYB61              ----------->GT1<---------LBD16  --------->TOE2(3)     <---------TOE2(3)<-------GAMYB       <----------DOF2  <---------ANAC46-------   acaatgttaatgatagtgaagagactgaggttgctcagttgttggttgaattgcctactaagactttgggaatggagaattcgtgtactcggagtgtacc  11882100                                                                            ------>ZmHOX2a(2)                                                                           <------ZmHOX2a(2)                                          ---------->DOF2            --------->ALFIN1                                  ----------->RAV1(2)              --------->ZAT2                                  <---------At4g35610              <---------ZAT2                                  --------->At4g35610             --------->LBD16                                  --------->ZAT2                 --------->LBD16                                  <---------ZAT2                 <---------LBD16                             <------ZmHOX2a(2)               <---------GLK1(1)                            --------->ARR11(3)           --------->ANAC46 <---------ARR14(2)             <---------TOE1(3)  <-----------RAV1(2)      --------->ANAC58 --------->ARR14(2) -ZAT14  ============================HOX2a_HOX2a         --------->ANAC58<---------GLK1(1)   <------- -ZAT18  <----------DOF2   <---------GLK1(1)           <---------AtLEC2<------NtERF2         <------- ---->AtSPL8 <---------TOE2(3)------>ZmHOX2a(2)     <-------MYC3 <---------ANAC46         <---------WOX13(1) -------DOF2 --------->MYB59<---------ARR11(3)      ------->MYC3<---------LBD16    <----------DOF2 >ZAT18  ===========================HOX2a_HOX2a <-------TEIL --------->GLK1(1)     <---------DAG2   < >TEIL   ------>ZmHOX2a(1) --------->GLK1(1)--------->DAG2  <---------GLK1(1)  <---------CCA1(2)  ---   tttcaagcgtccttttaggttatggactgagatcccagctgaagaaaaggttcatgtgcaaggaatcccgggtggggatccgtctctttttgatggattg  11882200                 --------->ZAT2                 --------->At4g35610                 <---------At4g35610            <---------HSFB2a(2)            --------->HSFB2a(2)            <---------LBD16            --------->LBD16  <---------MYB46(3)                     ------->TEIL  <---------DEAR3(2)          <---------ANAC46 <---------TOE1(2)          --------->ZAT18                                     <---------ANAC58 <---------TOE2(2)   --------->ALFIN1 <---------ANAC58                          <---------ANAC58 <---------DEAR3(1)<---------ANAC46   <---------ANAC58                          <---------ANAC46 --ANAC58  <---------LBD16  --------->ZAT14                                    <---------ZAT2 --ANAC58 <---------LBD16  --------->ALFIN1              --------->TOE2(3)     --------->ZAT2 ------NtERF2--------->LBD16<---------ZAT14              --------->TOE1(3)  <---------ANAC58 ------>ETT(2)   <---------ZAT2  <---------MYB46(3)   <-----------GT1       <---------ANAC58       <-   tcgtcggttttctcccgggagctgtggaagtgtagtggttatgtgcctaagaagtttaaccttaagtatagagagtttccttgctgggatgagcaagaga  11882300  Previous    Next  AGI:  At1g32810.2    Description:  protein binding / zinc ion binding. similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT4G10600.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62897.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011) Range:  from: 11881790    to: 11885823    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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