Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          --------->AHL20(2)                                                         --                       --------->AHL20(2)                                                      ------                  --------->At5g28300                                                       ---------                 ----------->GT1                                                           <---------YAB1                --------->ANAC46                                                         --------->YAB1               <---------LBD16                                                          <---------YAB1               <---------At5g28300                                                    <---------ICU4              <-----------GT1                                                         --------->YAB1              --------->MYB52(1)                                                      -------->ATHB1         --------->AHL20(2)                                                          --------->AHL20(2)         <---------AHL20(2)                          <---------AHL20(1)              --------->ICU4<-         --------->AHL20(1)                       <-----------GT1                    <---------AHL20(2)         <---------AHL20(1)                    <---------ICU4                        <---------ATHB51     <------ZmHOX2a(1) <---------AHL20(2)      --------->YAB1                     --------->AHL20(2)- -------MYB52(1)<---------TOE2(3)           --------->YAB1                      --------------->AGL15   gttagtaggaataaatttacggtatataaattagtaatcgccagattaataataacatatttccatcactcttacattcttacttaaattattatgataa  11817600                                                                                               <xxxxx                                                                                               <xxxxx                                                                                              -------                                                                                              <xxxxxx                                                                                             xxxxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                             xxxxxxxx                                                                                             <xxxxxxx                                                                                             <xxxxxxx                                                                                            ---------                                                                                            ---------                                                                                            <--------                                                                                           <xxxxxxxxx                                                                                           <xxxxxxxxx                                                                                          xxxxxxxxxxx                                                                                          xxxxxxxxxxx                                                                                          xxxxxxxxxxx                                                                                          ------>NtERF2                                                         --------->DAG2                  --------->ANAC46                                                        ---------->DOF2                  <xxxxxxxxxxx                                                  <------MYB83                           --------->ANAC58                                                  <------MYB46(1)                        --------->ANAC58                                                  ----------->GT1                      xxxxxxxxxxxxxx                                                 <---------MYB46(3)                   <xxxxxxxxxxxxxx                                                 --------->MYB55(2)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                <---------ANAC46       --------->TOE1(3)<xxxxxxxxxxxx                                           <---------bZIP60(2)         <---------MYB59xxxxxxxxxxxxxxx                                           <---------ANAC46            --------->TOE2(3)xxxxxxxxxxxxx                                           <---------ANAC58          ------>MYB83  xxxxxxxxxxxxxxxxxx        --------->GLK1(2)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) -------->P xxxxxxxxxxxxxxxxxxxxx ------->ARR11(3)   <---------ARR14(2)     <---------ANAC58          ------>MYB46(1) <-----------GT1 ---->DOF2  <---------LBD16  <---------TOE2(3)  <---------MYB55(1)  <---------ALFIN1<xxxxxxxxxxxxxxxxsmallRNA(i) >YAB1 <---------GLK1(2)  <---------MYB52(2) --------->ALFIN1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --------ARR11(3) ----------->ARR10    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) -------->CCA1(2)<--------P --------->MYB52(1)<---------MYB46(3) <xxxxxxxxxxxxxxxxxsmallRNA(le3)-----   agatatatagaatctctgggtagatttgactaacgaatagagatgtcgtggtgggtaaaaaagtccagccctacctaaacccaaaataaacccgcccacc  11817700                                                                                        --------->MYB46(3)                                                                                        <---------MYB59                                                                                       --------->ANAC58                                                                                       --------->ANAC58                                                                                    xxxxxxxxxxxxxxxx>smallRNA(s)                                                                              <xxxxxxxxxxxxxxxxxxxxxx                                                                              <xxxxxxxxxxxxxxxxxxxxxx                                                                              <xxxxxxxxxxxxxxxxxxxxxx                                                                             <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                            -------->P <-------------                                                                            <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                            --------->MYB52(1)                                                                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                           xxxxxxxxxxxxxxxx>smallRNA(i)                                                                           <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                          xxxxxxxxxxxxxxxx>smallRNA(i)                                                                          xxxxxxxxxxxxxxxx>smallRNA(s)        --------->TOE2(3)                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)        <----------DOF2                                                  <xxxxxxxxxxxxxxxxsmallRNA(i)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     ------>MYB46(1)                                                     <xxxxxxxxxxxxxxxxsmallRNA(s)     ------>MYB83                                                        xxxxxxxxxxxxxxxx>smallRNA(s)   <---------MYB59                                                      <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  --------->ANAC46                                                      xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                        xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxsmallRNA(le3)                                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ---->RAV1(1)                                                          xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxxsmallRNA(si3)                                       xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxx>smallRNA(fl3)                                         --------->LBD16 xxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxsmallRNA(i2)                                        xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxsmallRNA(fl3)                                      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxx>smallRNA(le3)                                    <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxsmallRNA(si3)                                   --------->KAN4(2)  <---------PCF2 xxxxxxxxxxxxxxxxsmallRNA(le3)                                   xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxx >DEAR3(1)                                                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) >MYB46(3)                                                      <---------MYB46(3) <---------DEAR3(2) -MYB55(2)      <---------ARR14(2)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxsmallRNA(le3)                                <xxxxxxxxxxxxxxxxsmallRNA(i)xxxxxxxxxxxxx xxxxxxxxxxxxxsmallRNA(le3)                                 <---------YAB1xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxx>smallRNA(le3)                                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxx>smallRNA(le3)                          <xxxxxxxxxxxxxxxxsmallRNA(s)  <xxxxxxxxxxxxxxxxxx xxxxxxxxx>smallRNA(si3)                            xxxxxxxxxxxxxxxx>smallRNA(s)--------->LBD16 xxxxxxxxxxxxsmallRNA(le3)                         --------->LBD16  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxx>smallRNA(le3)                           ----------->GT1<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxsmallRNA(si3)                           --------->ANAC46xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxsmallRNA(le3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <---------WOX13(1) <---------MYB46(3) xxxxx>smallRNA(se3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxx>smallRNA(i)------>MYB46(1) xxxx>smallRNA(si3)<-----------RAV1(2)  ----------->GT1<xxxxxxxxxxxxxxxxsmallRNA(i)xxxxxxxxxxxxxxxxx>smallRNA(si3) x>smallRNA(si3)--------->GLK1(2)   <---------AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)------>MYB83 ---->AtMYB61   --------->ARR14(2) --------->AHL20(2)<xxxxxxxxxxxxxxxxsmallRNA(i)--------->ALFIN1   aaaaacccaactttagaaaatccagatgggtttttgatttaatggataaaacccgaaaaaacctgattgttccgagactacccgtgggtacccaacttgg  11817800                                                                                   --------->AHL20(2)                                                                                  <---------AHL20(2)                                                                             --------->ARR11(3)                                                                             --------->AHL20(1)                                                                             <---------AHL20(1)                                                                             <---------ARR11(3)                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <---------ARR11(3)                        <-----------RAV1(1)        <---------AHL20(2) xsmallRNA(fl3)                                  ------->TEIL                --------->AHL20(2) xsmallRNA(le3)                            <---------AHL20(2)               --------->AHL20(2) xsmallRNA(se3)                           --------->YAB1------->TEIL<---------ANAC46 ----AGL1                                 --------->AHL20(2)        <---------ANAC58 x>smallRNA(s)                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<---------AHL20(2)  <-- xxxxxxxxxxxxxxx>smallRNA(se3)           <---------YAB1<---------CCA1(2)<---------YAB1        <------ xxx>smallRNA(s)                       <---------------AGL15        <---------ANAC58<---------AHL20(2) xxxxxsmallRNA(se3)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->AHL20(2)    -------   tttctgtcaatttcttagagtttatttcaagtgctaatatactattatatgtatgttgtatctataatttgcttataaatatattttaaattgtatttat  11817900                                                             <---------AHL20(2)                                                             --------->AHL20(2)                                                   <------NtERF2                                        <---------ANAC58     --------->AHL20(1)                              ----------->GT1     --------->LBD16                             <---------TOE2(3)    ----------->GT1                             --------->DAG2      <---------ANAC46                          --------->ARR14(2)                          xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------AHL20(1)       <-----------HVH21                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                      ----------->GT1          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------LBD16<------------CBF<------NtERF2       <-        <---------ANAC55(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)            --------->LBD16      <- ---------GT1 <---------AHL20(2)        <---------ANAC58    --------->AHL20(2)----------->GT1  ------ ---AHL20(2) <---------AHL20(1)         <---------ANAC46--------->AHL20(1)   <---------ANAC46  <----- -->AHL20(2) --------->AHL20(1)     <------------CBF    <---------AHL20(1)  <---------LBD16<---------ARR14(2)   tttctgtattacatatatatttgatgggaaaaaggttgaattgcgtttttggcggaaaaatattaaattgcattttttggcggaaaaatgtcaaatcctt  11818000                                 <xxxxxxxxxxxxxxxxsmallRNA(s)                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                <------NtERF2                               --------->LBD16                              >>>>>>>>>>E2Fa                              <---------ANAC58                              <---------ANAC46             <------NtERF2               <xxxxxxxxxxxxx                              <---------ANAC58     --------->ARR14(2)                 >>>>>>>>>>E2Fa                             <<<<<<<<<E2Fd       <----------DOF2                      >>>>>>>>>>E2Fc                             <---------LBD16    <---------ANAC58                      >>>>>>>>>>E2Fd                             <<<<<<<<<E2Fc<---------AHL20(2)    <---------AHL20(1)    >>>>>>>>>>E2Fe                      xxxxxxxxxxxxxxxx>smallRNA(i) <---------ARR14(2)                --------->LBD16                     <---------ANAC58  --------->TOE2(3)  ----------->GT1           <---------LBD16           --------->ICU4   xxxxxxxxxxxxxxxx>smallRNA(i)  --------->LBD16 <---------YAB1         --------->GLK1(1) xxxxxxxxxxxxxxxx>smallRNA(i) --------->At4g35610  <---------YAB1     <----     --------->ETT(1)<---------ANAC58  ----------->GT1  <---------At4g35610  --------->ICU4  -------- --------ANAC58  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    <---------LBD16  <---------ARR11(3)  -------- --------ANAC58 xxxxxxxxxxxxxxxx>smallRNA(i)    <---------ANAC46--------->AHL20(1)  <---------ANAC46 >ZmHOX2a(1)  *TSS   <---------ANAC46 ----------->GT1 <---------DEAR3(1) --------->ARR11(3) --------- -----DOF2<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <---------ANAC58--------->ARR11(3) <---------LBD16   ttcttggtcggaaatgttgaatgtcgtttttggcgggaaaatgttaaattgcgttttcggcggaaaaatattgaatatcatttttagcgggaaaatgtta  11818100                                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                  <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                 <------NtERF2                                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                --------->LBD16                                                               <---------ANAC46                                      <------NtERF2            <---------ANAC58                                    >>>>>>>>>>E2Fa             >>>>>>>>>>E2Fa                                    <---------ANAC58           <---------ANAC58                                    <---------ANAC58          <<<<<<<<<E2Fc                                    <---------ANAC46          <---------LBD16                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                   <---------LBD16          xxxxxxxxxxxxxxxx>smallRNA(i)  <---------ANAC58                 <<<<<<<<<E2Fc       xxxxxxxxxxxxxxxx>smallRNA(i)  <---------ANAC58                 <<<<<<<<<E2Fd      <---------ANAC58  ----------->GT1  <---------ANAC46                xxxxxxxxxxxxxxxx>smallRNA(i)<<<<<<<<<E2Fd<---------AHL20(2)     --- xxxsmallRNA(s)                  xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxx>smallRNA(i)   <------NtERF2 -----AHL20(2)               <----------DOF2          <---------ANAC58  --------->TOE2(3)  --------->LBD16 ->TOE2(3)                   <---------DAG2       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      ---------- --->GT1            <-----------HVH21--------->LBD16  <---------ANAC46 ----------->GT1    <---------ANAC46 -->GT1  >>>>>>>>>WRKY18<---------At4g35610      xxxxxxxxxxxxxxxx>smallRNA(i)            <---------LBD16   aattgcgtttttgacagaaaaatgtcaactcctttttggcgggaaaatgttgaatgtcgtttttggcgggaaaatgttaaattgtgtttttggcggaaaa  11818200                                                                           --------->AHL20(1)                                                                           --------->ARR11(3)    <---                                                                           <---------AHL20(1)   -----                                                                      ----------->GT1          >>>>>>                                                                      <------NtERF2            <-----                                                                     --------->LBD16           <-----                                                                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                    <---------ANAC58           <-----                                                                    <---------ANAC46          <<<<<<<                 <------NtERF2                                      <---------ANAC58          <<<<<<<                ----------->GT1                                     >>>>>>>>>>E2Fa            <------                --------->LBD16                                    <---------LBD16           xxxxxxxx               <---------ANAC46                                    <<<<<<<<<E2Fc       xxxxxxxxxxxxxx        <---------YAB1             <----------DOF2                 <<<<<<<<<E2Fd      <---------ANAC58     <---------ATHB12--------->ARR11(3)                         <xxxxxxxxxxxxxxxxsmallRNA(i)xxxxxxxxx     --------->ICU4  <---------AHL20(1)                      <----------DOF2          <---------ANAC58  xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                        <---------ANAC58          <---------ANAC46 -------->GT1 <---------LBD16   <---------ANAC46            <---------ANAC46      xxxxxxxxxxxxxxxxxxx ->GT1<---------ICU4 --------->AHL20(1)                     <---------ANAC58  xxxxxxxxxxxxxxxxxxxxxxx   atgtgaaatcatttttggcggaaaatattgaatcgcgttttttggcgaaaaaattttgaattgcgttttggcgggaaaatattgaatgtcgtttttggcg  11818300                                                  <------NtERF2                                                 --------->LBD16                                                <---------ANAC58                                                <---------ANAC58 ---NtERF2                                      <---------ANAC46 ---->LBD16                                     >>>>>>>>>>E2Fa                                      < >>>>E2Fa                   --------->AHL20(1)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)               < ----ANAC58                 --------->ARR11(3) <<<<<<<<<E2Fc                                      xxx ----ANAC58            <------NtERF2           <---------LBD16                               xxxxxxxx ----ANAC46  <---------ANAC58                  <<<<<<<<<E2Fd      <---------ANAC46      <---------WOX13(1) <<E2Fc      <---------ANAC46                xxxxxxxxxxxxxxxx>smallRNA(i)              <---------ANAC58 <<E2Fd      <---------ANAC58  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<----------DOF2     <---------ANAC58 ---LBD16<---------GLK1(1)  <---------AHL20(1)xxxxxxxxxxxxxxxx>smallRNA(i)<---------ANAC46 ---------- xxxxxxxx>smallRNA(i) --------->LBD16   xxxxxxxxxxxxxxxx>smallRNA(i)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2) xx>smallRNA(i)       ----------->GT1  <---------ANAC58           <---------ANAC58    --------->ATHB12 xxxxxxx>smallRNA(i) <---------ANAC46  <---------ANAC46           <---------ANAC58   <---------YAB1xx xxx>smallRNA(i2)   <---------LBD16    <---------ANAC58        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)< >smallRNA(i2) <---------MYB52(1)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <---------AtMYB61<xxxxxxxxxxxx   ggaaaatgttgaattccgttttggcggaaaaatattgaatgtcgtttttggcgggaaaatgttgaattgcgttttggtgggaaaatgttgattgtcgttt  11818400   <------NtERF2  --------->LBD16                 --------->AHL20(1) >>>>>>>>>>E2Fa                   <---------AHL20(1) <---------ANAC46                 --------->ARR11(3) <---------ANAC58            ----------->GT1            <------NtERF2 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 --------->HSFB2a(2) <---------ANAC58          <---------ANAC46            <---------HSFB2a(2)         <------NtERF2 ---------LBD16     <----------DOF2                   --------->ETT(1)            ----------->GT1 <<<<<<<<E2Fc      <---------ANAC58                   <---------ANAC46            --------->LBD16 xxxxxxxxxxxxx>smallRNA(i) <---------ANAC58           <---------LBD16      --------->ARR14(2) xxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                 <---------ARR14(2) ------- >ID1              <---------ANAC46                <-----------RAV1(1) <---------LBD16   ----------->GT1 xxxxxxxxxxxxxx>smallRNA(i)<---------ANAC58    <---------YAB1        <xxxxxxxxxxxxxxxxsmallRNA(i) <<<<<<<<E2Fd      <---------ANAC58            --------->ICU4  --------->TOE2(3) <---------ANAC46 xxxxxxxxxxsmallRNA(fl3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)----------->GT1   <---------LBD16   ttggcgggaaaatgttgaattgcgttttggcgagaaaatattgaatgtcatttttgtcgggaaaatgttaaatcgcggttttggcggaaaaatgtgaaaa  11818500  Previous    Next  AGI:  At1g32680.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35880.1) Range:  from: 11818014    to: 11818259    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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