Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                  <-----------GT1                          <-----------GT1 --------DOF2                                  --------->ICU4                --------->YAB1 ->YAB1                                     --------->ICU4               <---------AHL20(2) --ICU4                                   ----------->GT1               <---------AHL20(2)    <------ -ATHB1                          ----------->RAV1(1)                    --------->AHL20(2)  <-------- -ATHB12                     --------->ANAC46<---------ICU4 <----------DOF2  -------->HAHB4 <-------- -ATHB51            --------->YAB1 --------->ZAT6        --------->GLK1(2)--------->YAB1--------->AHL20(2)   cttttctatttttgagtcaaaaacataattcactccaacagtagtagtaattactagagtttctttgagttttttttaataatacaacaattaactttac  11672500                                                                                              <------                                                                                            <------MYB46(1)                                                                                            <--------                                                                                            <------MYB83                                                                                            <--------                                                                                            <--------                                                                                            <--------                                                                                           --------->MYB52(2)                                                                                   <---------At5g28300                                                                                  <-----------GT1                                                                            <-------MYC3   --------->MYB111(2)   <-----------GT1                                           --------->YAB1 <-------MYC2   --------->MYB59  <-----------GT1                                           <---------YAB1  ------->MYC3   --------->MYB111(1) <---------AHL20(2)                                       --------->YAB1    ------->MYC2   --------->MYB46(2) -----GT1                       <-----------GT1          <---------YAB1  <---------ANAC58 <---------MYB55(1) -DAG2<----------DOF2 <-----------GT1                  <---------ZAT6    <---------ANAC58<---------MYB52(1) --DOF2          <---------TOE2(3)             <---------REM1(1)        <-------TEIL    <-----------HVH21   cattttatctttttgaaaaaaggtttaccattttttacttcttgtagagttgtagtagtattatcatagtatggtgcatgtgtgttactgtgttaggtgt  11672600                   --------->AHL20(2)      <---------ANAC46  --------->ATHB12                                            <---------YAB1 ---ANAC46         <---------AHL20(2)                                          --------->ARR14(2) -ANAC58      --------->ANAC58      ----------->GT1                            <---------ARR11(1) -ANAC55(1)   --------->ANAC58   <---------ANAC58        --------->AHL20(2)   <---------CCA1(2)<----- -ANAC58      --------->ANAC46   <---------ANAC58--------->ANAC58        <-----------GT1     -------- -ANAC46   <---------ARR14(2)    <---------ANAC46--------->ANAC58  <-------TEIL<---------ARR11(3)  <-   gtattgttttgtatatacgaaataaatgtttggaggcttggaaaatttttcaaggaaaaaaaaatcacatccatatgaccatatctattaatgagcaaca  11672700                                                                                         <---------At5g28300                                                                                        <-----------GT1                                                                                    --------->AHL20(2)                              <---------AHL20(2)                                    <---------AHL20(2)                             --------->AHL20(2)                                     <---------YAB1                         --------->ICU4                     <---------YAB1    --------->ARR11(3) ----ALFIN1              <---------YAB1                 <----------DOF2       <---------ARR11(1)    - --->RAV1(1)       ------>NtERF2                   ---------->DOF2           <---------CCA1(2)   <--- --------ICU4     <---------ANAC46                <---------AHL20(2)  <---------GLK1(2)<---------YAB1   ctcatttcatcatatagatgccgagtgatcatttaatacactgtaagaaaatttaaagctttctgattccaaaattctcaaatctttttattacagtgtc  11672800                                                                                                 ----                                            <---------ANAC55(1)                                  <---                                  ------>MYB83     <---------ZAT2                   --------->YAB1                                <---------MYB59    --------->At4g35610              ---------->DOF2                                --------------->AGL15                   --------->ATHB51  ===========                                <---------------AGL15                   <---------ICU4    ===========                               ----------------->AG<---------At4g35610  -------->ATHB1    ------>ZmHOX2a(2)                               ----------------->AGL3                   --------->ATHB12<---------AGP1                               <-----------------AGL2                  <---------AHL20(2)============                               ----------------->AGL2 --------->At4g35610           =================                               ----------------->AGL1 --------->ZAT2   --------->ICU4   --------->ARR11(3)                               <-----------------AGL3 <---------At4g35610<------------CBF<------ZmHOX2a(2)                             <-----------GT1<---------ANAC58           <---------ATHB51 <---------ARR14(2)                          <---------ICU4    --------->ANAC55(2)     <---------AHL20(1)  <---------ARR14(3)                          --------->YAB1    <---------ANAC55(2)     --------->AHL20(1)  <---------ARR11(3)                         --------->ICU4     <---------ANAC58        <---------AHL20(2)  <-----------ARR10         <----------DOF2 <---------YAB1    <-------TEIL            <---------AHL20(2)   --------->ARR14(3)      <-----------GT1 <---------YAB1      <-----------GT1          --------->AHL20(2)   --------->ARR14(2) -------->YAB1       <---------GLK1(2) ----------->GT1<---------ZAT2--------->AHL20(2) --------->RVE1(1) -------DOF2       --------->ICU4 ------>MYB46(1) <-----------RAV1(1)  --------->AHL20(2)============   tttcatattcactttcttacaaagattattattaccaaatttagttacatgtctgctgctgagtttcaaataaattattgtcttaataaagatcttatcc  11672900            <---------ARR14(2)            --------->ARR14(2)           *TSS          ------->MYC3          <-------MYC3         --------->TGA1a         <---------TGA1a         --------->O2         <---------O2         --------->ANAC46         --------->ANAC58         =====================bZIP_DOF         --------->ANAC58         --------->ANAC55(1)         =====================bZIP_DOF       <---------ALFIN1     --------->ANAC46     <---------ALFIN1   <---------ALFIN1                                               <---------AHL20(2)   <----------DOF2 -->ZmHOX2a(1)                                       <---------YAB1                   ------>ZmHOX2a(2) ------CCA1(2)                                      --------->KAN4(2)               --------->ARR11(3) ======================HOX2a_HOX2a                 <---------HSFB2a(1)              <---------ARR11(3) ===HOX2a_HOX2a    <----------DOF2                 --------->KAN4(1)        --------->LBD16 ===HOX2a_HOX2a ------>ZmHOX2a(1)                  --------->HSFB2a(1)     --------->HSFB2a(2)      - ==================bZIP_DOF      <----------DOF2   <---------KAN4(1)       <---------HSFB2a(2)     -- ======================HOX2a_HOX2a                <---------KAN4(2)       <---------LBD16     -------   tatctccacacacgtttcctcctttttatttctcactttcaagcttagaaagaatattcttgttcgattttttttctcccgaacatgatctttcaatctc  11673000                                                         <---------ICU4                                                         --------->YAB1                                                        <---------YAB1                                                      <---------ICU4                                                      --------->YAB1                                                     <---------YAB1                                                   <---------ICU4                                                   --------->YAB1                                                  <---------YAB1                                                <---------ICU4                                                --------->YAB1                                               <---------YAB1 ------>GAMYB                                <---------ICU4 ------->MYB46(3)                            XXXXXXXXXXXXXXXXXXXX>MIR414 -->TOE2(3)         --------->ZAT6           --------->YAB1   --------->At4g35610<-------TEIL <------   aacgacgatttctcagtgactaatactacatttgtatacattcttcatcatcatcatcatcatcatctgtgtttttgttcatattcatttttcagttatc  11673100                                                                                              -------                                                                                              -------                          <---------ANAC58                                               --------->ARR14(2)                          <---------ANAC58                    <---------WOX13(1)     --------->HSFB2a(2)                         <---------TOE1(2)                   >>>>>>>>>ARR2       <---------CCA1(2)                      <---------ANAC58       <---------MYB52(1)           <------ZmHOX2a(2)   -------                      <---------ANAC58     ----------->GT1 <---------YAB1<---------ARR11(3)   -------               <---------DAG2             ---------->ID1   <---------AHL20(2) --------->MYB46(3)  <-- ---DOF5.7(2)  <----------DOF2 <-----------GT1          ------->TEIL     --------->ARR11(3) <--------   gttttcaatttttaaaactttttttcttgggtttcacaaaatttgtcgttaatcgatgaatttgattgttttcaagatcacccatctctcgaattcacga  11673200               <---------MYB52(1)              --------->LBD16             <---------ANAC46             --------->ANAC55(2)             <---------ANAC55(1)        <---------DAG2      <---------At4g35610                                            <---------TOE2(3) -->ANAC58   <---------ANAC55(2)                               <---------AHL20(2)  <---------HSFC1(2) -->ANAC58   <---------ANAC58                                  --------->AHL20(2)  --------->HSFC1(2) -->ANAC55(2)<---------ANAC58                                  --------->ICU4   ---------->DOF2 -->ANAC46  <---------LBD16 --------->ICU4                ----------->GT1     <------ZmHOX2a(1) -------ARR11(3)  <---------YAB1 <-----------GT1        ---------->DOF2     <---------TOE2(3)    ---- ---GT1 <----------DOF2----------->GT1              ---------->DOF2  <---------TOE1(3)         <-----   aatctctcagcttttccgtgattcttggtaaaaattcacaaaatcgaaattggagaaagaaagaaaaaattagggtttgaggaaaagcttcgatttttca  11673300                             <------NtERF2                            --------->LBD16                           <---------ANAC46                          <---------LBD16                         --------->LBD16  --------->ANAC46                                  <------NtERF2                         ------>NtERF2    --------->O2                                --------->ARR14(2)                        <---------LBD16   <---------TGA1a            --------->LBD16  --------->GLK1(2)                        <---------RAP2.6(2)<-------MYC3             <---------ANAC46  <---------ARR11(1)                        <---------RAP2.3(2)------->MYC3            <---------LBD16    <-----------ARR10                       <---------LBD16    --------->TGA1a         --------->LBD16     <---------ARR14(2)                     --------->GLK1(2)    --------->ANAC55(2)     ------>NtERF2       ------->TEIL                     <---------ARR14(2)   <---------O2           --------->DEAR3(1)  <---------GLK1(2)                     --------->ARR14(2)   <---------ANAC55(2)    --------->ANAC46    <---------CCA1(2)                    <---------GLK1(2)  <---------ZAT18         ------>ZmHOX2a(1)     <---------ARR14(1) ----->ANAC46--------->DEAR3(1)  <---------REM1(1)     --------->ANAC58    <---------WOX13(1)       < ------GT1  <---------LBD16<---------DEAR3(1)          --------->ANAC58  --------->ATHB12 <---------DEAR3(1)   cacgatgagtcatcaccggcgagattccggcggagatgtagttcacgtgattcccacaaacaatcctccgccggataattggtttccgaatctcggcgat  11673400  Previous    Next  AGI:  At1g32360.1    Description:  zinc finger (CCCH-type) family protein. similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT2G35430.1); similar to hypothetical protein OsI_026903 [Oryza sativa (indica cultivar-group)] (GB:EAZ05671.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) Range:  from: 11672911    to: 11675319    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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