Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                            -------->ATHB1                            <                                                          --------->YAB1                         ----                                                         --------->ICU4                        ------                                                         <---------AHL20(2)                    <-----                                                  ----------->GT1                       ------>ZmHOX2a(2)                                               --------->ZAT2                          <------ZmHOX2a(2)                                               --------->At4g35610                    <---------ARR14(2)                                               <---------ZAT2                         --------->ARR11(3)                                               <---------At4g35610      <---------ARR11(3)<---------ANAC58                                              ------->TEIL<---------ICU4--------->ARR11(3)<---------ANAC58                                              --------->GLK1(2)     ---------->DOF2   --------->ARR14(2)                                         --------->MYB52(1)    <---------YAB1         <---------ARR11(3)      ---------->DOF2             --------->At4g35610    --------->AHL20(2)    ================HOX2a_HOX2a ---->DAG2                        <---------At4g35610    <---------ATHB51      <------ZmHOX2a(1) <--- --->DOF2                <---------TOE2(2)<---------TOE2(3) <---------YAB1     ===============HOX2a_HOX2a   ggcgaagggaaagggaagaagattacataggtattaagctgtctaacgaagctggagaaattattatgcttaaagttcttaggaagaagatcgcgagcga  11660000     --------->MYB55(2)     <---------MYB46(3)     --------->ABI4(2)                                               --------->YAB1    <---------AtMYB61                                               --------->ICU4   <---------MYB52(1)                                  <---------ARR11(1)        --------->YAB1  --------->LBD16                                      ------->TEIL <---------YAB1 ---------LBD16                                        <---------ARR14(2)     <---------CCA1(2) ----->GLK1(1)                        --------->ANAC58 --------->GLK1(2)    --------->YAB1        --- --->ZAT18                            --------->ANAC58 --------->ARR14(2) -------->P  --------->ARR11(3) ----ZAT18                   <---------YAB1--------->ANAC46      <---------YAB1 <---------YAB1   <--- ------GLK1(1)  ----------->GT1     --------->ZAT6    <---------ARR14(1)--------->MYB46(3)       ----   actccggtggtttccaaacgataaaactgttgttattagcactccaagagacaatcgaatctgtattgtgatcatcaaccatatcataggtcttgctcag  11660100                                                                                          -----------                                                                                          <---------MYB46(3)                                                                                     <---------ANAC58                                                                                     <---------ANAC46                                                                                  <------NtERF2                                                                                  <---------MYB52(1)                                       <---------TOE2(3)                         <-----------HVH21           <------NtERF2               <---------TOE1(3)                         ------>NtERF2          ------>NtERF2                <---------AtMYB61                        <---------O2         <---------ANAC46           <----------CDC5                             --------->O2         <---------ANAC58       <-----------RAV1(2)                             --------->RAP2.3(2)         <---------ANAC58       <------NtERF2                                   --------->DEAR3(1)        <------NtERF2           --------->ATERF1(1)                            --------->RAP2.3(1)        --------->ATERF1(1)    <------NtERF2                                   --------->ATERF1(1)       <---------DEAR4(2)      ------>NtERF2                                  ------>NtERF2<-------GAMYB       <---------ATERF1(1)     <---------ATERF1(1)                            --------->LBD16      --------->ALFIN1         --------->At4g35610                            <---------ATERF1(1)      <---------DEAR3(1)       --------->LBD16 <------ZmHOX2a(1)             --------->ANAC46     --------->ATERF1(1)       <---------At4g35610    <---------ANAC58       --------->DEAR3(1)     <------ZmHOX2a(1)        --------->DEAR3(1)      <---------ANAC58     ------>ZmHOX2a(1) ------>MYB52(1)             --------->RAP2.3(1)      <---------ANAC46     <---------ATERF1(1)  <---- ------ARR14(2)              <---------LBD16 <---------ANAC46        ------->TEIL<---------ATERF1(1) ----->ARR14(2)         <---------GLK1(2) --------->ALFIN1          <---------GLK1(2)<---------ANAC58   aaacggaggaggcgcgtttgaacttagaatcgccgcaggctgaggttgaggagatggcttagtctccattgaatctcctccgccgtcgcttgtggttact  11660200                                                                      --------->ANAC46                            --------->ANAC46                          --------->ANAC58  <---------YAB1               <---------ARR14(2)                                     --------->ANAC58<-----------GT1               --------->ARR14(2)                                   <-----------GT1<---------ICU4 >GT1  <-------TEIL <---------YAB1                        <---------TOE2(3)       --------->ICU4 ------DOF2    <---------GLK1(2)                          <---------TOE1(3)  ----------->GT1   ttgctcacatccattcggatttttgattccaagtcaatatttgggaattttgagaaaattagggttttatatacgaaactggtgatttttacaataggtg  11660300                                 <---------ARR14(2)                          ------>ZmHOX2a(2)                         --------->CCA1(2)                         <------ZmHOX2a(2)                        <---------ARR14(2)                                --------->CCA1(2)                        <---------ARR11(3)                               <---------ARR11(3)                        --------->ARR14(2)                --------->CCA1(2)                        --------->AGP1                   <---------ARR14(2)                        --------->ARR11(3)               --------->ARR11(1)                        --------->ARR14(3)               --------->ARR14(2)                 ---------                        <---------ARR14(3)               --------->ARR11(3)                <---------ARR11(3)                        <---------AGP1       --------->KAN4(1)    <------NtERF2            <---------GLK1(2)                  <---------WOX13(1)        <---------KAN4(2)   <---------DEAR3(1)        <---------RVE1(1)                --------->ATHB12 <---------GLK1(1)       <---------ARR11(3)        --------->At4g35610               <---------YAB1    --------->ARR14(2)     *TSS   <---------LBD16  <------ZmHOX2a(2)            <----------DOF2      --------->GLK1(1) --------->ANAC46      --------->ARR11(3)--------->ARR11(3)   agagagagagataacttttgattgaagatctagagaattctcagagaacattcacgagagatatgggcggagagagatatagatcagaagagagattttg  11660400                                                        --------->ANAC46                                                        --------->ANAC58                                                        --------->ANAC58                                                        --------->ANAC55(2)                                                        <---------ANAC55(2)                                                       <---------LBD16                      --------->CCA1(2)               --------->MYB52(1)                         <---               ---------->DOF2                        <-----------GT1                ---------->DOF2             --------->ANAC58                   --------->ANAC58                --------------->AGL15             --------->ANAC58                   --------->ANAC58                <---------------AGL15           <------ZmHOX2a(1)                    --------->ANAC55(2)       <----------DOF2        ---- >GLK1(2) <----------ID1----------->HVH21       --------->ANAC46          <---------DAG2      -------   aaatcgatggagaggacgaaagagagacgacgggagactcatgaacacttacgaaattacggaattagacatttcgctttttctcttaaaagcggatgat  11660500      <-----------HVH21   <---------ANAC46                                                                            ------   <---------ANAC55(1)                                                                         ------   --------->ANAC55(2)                                                                    --------->AHL20(2)   <---------ANAC55(2)                                                                   --------->YAB1   <---------ANAC58                                ----------->HVH21                   --------->AHL20(2)   <---------ANAC58                              <---------At4g35610                --------->TOE2(3)   <---------bZIP60(2)                           --------->At4g35610               ----------->GT1 <-----------GT1                          <----------DOF2                     <---------AHL20(2) ------AHL20(2)        <----------DOF2  ---------->ID1        <<<<<<<GRF7     <---------YAB1--------- ----->AHL20(2)<---------YAB1          <-----------GT1      ----------->HVH21<---------AHL20(2)<----- -->ATHB12     <---------AHL20(2)  <---------MYB52(1)     ----------->RAV1(2)--------->AHL20(2)<-----   ttattacgtgtcactatattattcgctattacgctctgttttttctttttgggctgactagcctgacacgagtatcgattttaattcgttaaaataataa  11660600                                                                                                    <                                                                                                   <-                                                                                                   --                                                                                                -----                                                                                                <----                                                                                                <----                                                                                                -----                                                                                                -----                                                                                                <----                                                                                               ------                                                                                               <-----                                                                                             <-------      --------->AHL20(2)                                                                    <--------      <---------AHL20(2)                                                                    ---------      <---------AHL20(1)                                                                  --------->YAB1     --------->AHL20(2)                                                     <---------CCA1(2)-------- --->AHL20(1)                                                --------->MYB52(1)         --------->AHL20(2) --->AHL20(2)                                              <---------MYB52(2)<---------ARR11(1)------ >YAB1--------->AHL20(1)                                   <---------MYB46(2)--------->ARR11(3)<----- ----AHL20(1)                                              <---------MYB111(1)          --------->AHL20(1) ----AHL20(2)          <---------ICU4           --------->ANAC55(2)     <-----------GT1--------->YAB1   attgaaattttattttgtcttacaatcttttcaaattccatcagagatttatgtattagtaactaacaaagttttttcaaatcttttaaaaataataata  11660700 ---------AHL20(2) --------AHL20(2) ------->AHL20(2) --->HAHB4 -----ICU4 ----ATHB1                                                                          <-----------GT1 ---->YAB1                                                                   <---------AHL20(1) ---->ATHB51                                   --------->TOE2(3)             --------->AHL20(2)     - ----HAHB4                                    --------->ATHB12               <---------AHL20(2)    <- --->AHL20(2)                                 <---------ICU4              --------->AHL20(2)    <---- ----YAB1                           <---------GLK1(2)                    --------->AHL20(2)    <----- --ICU4                      ---------->DOF2  --------->YAB1            <---------YAB1         ------ -YAB1                   --------->YAB1      <---------ATHB12        --------->AHL20(1)     <-------- >ICU4                  <---------YAB1   <---------AHL20(2)          <---------AHL20(2)     --------- ->YAB1                 --------->ICU4   --------->AHL20(2)         --------->AHL20(2)     --------->ICU4 --->ICU4             --------->YAB1--------->ARR11(3)      --------->ZAT6<---------AHL20(2)<--------HAHB4 ----ATHB51      <---------YAB1     <---------ARR11(3) --------->YAB1--------->AHL20(2)    <---------YAB1   attaaatctacaaactattttgaataataataaaagtagatttttaaatcattagtttaataacactaaattttattaaaaaattttaacttcataatta  11660800                                                                                                  ---                                                                                                 ----       --------->ATHB12                                                                          <---   --------->AHL20(1)                                                                           <----   <---------AHL20(2)                                                                           <----   <---------AHL20(1)                                                                           <---- -------->AHL20(2)                                                                              ----- --------AHL20(2)                                                                               ----- -----AHL20(2)                                                                                 <----- ----AHL20(2)                     --------->AHL20(2)          --------->AHL20(2)       ------>ZmHOX2a(1) --->AHL20(2)                  <---------ANAC55(2) <-------TEIL                        <------------- -ICU4<---------YAB1<-----------GT1            <---------AHL20(2)   --------->DAG2     ============== >ATHB51   ----------->GT1  <---------ATHB12  --------->AHL20(2)   ---------->DOF2    <--------------   aataatatatgatttgtaaattttacacaaatcacttaaaatactatattaaatacatcgtctaaaaaataaagtcatggttttatttcctctatgtgga  11660900  Previous    Next  AGI:  At1g32330.1    Description:  ATHSFA1D (Arabidopsis thaliana heat shock transcription factor A1D); DNA binding / transcription factor. Identical to Heat stress transcription factor A-1d (HSFA1D) [Arabidopsis Thaliana] (GB:Q9LQM7); similar to HSF1 (ARABIDOPSIS HEAT SHOCK FACTOR 1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G17750.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN71266.1); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain Heat shock factor (HSF)-type, DNA-binding; (InterPro:IPR000232) Range:  from: 11656966    to: 11660356    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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