Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          ------->MYC2 -----------RAV1(2)     <-------MYC3 ------ZAT14            <-------MYC2 ----TEIL<---------ANAC58                                                                         --- ----->ZAT14            ------->MYC3                                                             ---- ------->HVH21    --------->YAB1   <---------YAB1       <---------GLK1(1)                        <--- -------HVH21   --------->GLK1(2)  --------->ICU4     <------ZmHOX2a(1) ---------->DOF2         <---- --GT1   <---------ANAC58--------->ALFIN1          <---------LBD16---------->DOF2     <---------ANAC46   tcacaggggatgcgagagaatcagaacgtggatgctcatgatcaagagaaaactcaggaactcggtttcaaaggaaaagagggagatggagtttaagagg  10335500        --------->ANAC55(2)        <---------ANAC55(2)                         --------->ANAC58                        <-------TEIL       <-----------------------TaNAC69(2)           --------->ANAC46                 --------->YAB1      --------->CCA1(2)                         --------->ANAC46              --------->ANAC58      <-----------GT1                          <---------LBD16                --------->ANAC58 ------>MYB52(1)                              <---------At5g28300       <----------DOF2 <---------ICU4 ----->ARR14(2)   ---------->DOF2         <----------DOF2    <---------ANAC46 --------->ANAC46    <-- ------ARR14(2)  --------->AtMYB61  --------->ATHB12--------->ANAC58<-----------GT1 --------->AHL20(2) --ZmHOX2a(1) --------->AtMYB61    <---------YAB1--------->LBD16 ----------------------->TaNAC69(2)   aaacggagttacgagaccaccaaagagaactctcaagatgatttcttttaccgcaagaaactgatgtgtttttcctttgaacgcaaataataagttcatt  10335600                                      --------->ATHB12                                   <------------CBF       <----------DOF2                                  --------->ATHB12  <---------YAB1                               <------------CBF   --------->YAB1      <---------AHL20(1)                       <------------CBF          <---------ATHB12     --------->AHL20(1)          ------>ZmHOX2a(2)<---------ZAT6        --------->ICU4 --------->AtLEC2     --------->MYB52(1) -------YAB1        ------------>CBF<---------WOX13(1) ------->TEIL   <---------ARR11(3)  <---------MYB52(1)   ttgataaactgatcgtttcggaatcaattgtgttattgattgattaaacgaatgatgaaacttttaatgcaaaatatttgaacaaaataactgttattta  10335700                                         --------->ANAC58   --------->DEAR3(1)                                         --------->ANAC46  --------->RAP2.3(1)                                         --------->ANAC58  <------NtERF2                                      <---------ARR14(2)  ------>NtERF2                                      --------->ARR14(2)  --------->LBD16                                ----------->GT1          --------->ANAC46                      <-----                                <----------ID1 --------->MYB52(1)                             <------          ------------>CBF    ---------->DOF2 ----------->HVH21       ---------->DOF2   <----------DOF2 ---------->DOF2   <------------CBF>>>>>>>>>>GT-3b      <---------LBD16     ------------>CBF  -------   gaagaaagaaatatcaatagctattgaagataaaaagaaaaatacgccctaacagtttcccgccgaaaaaactaaagaaacaataccattctttgattaa  10335800                                         <---------TOE2(3)                                        >>>>>>>>>WRKY18                                     <------------CBF                                   <---------YAB1                      <------ZmHOX2a(1) ----AHL20(2)               <------------CBF                       <---------TOE2(1) ---AHL20(2)              <---------ARR14(2)                       <---------TOE1(1)     ------------ -->AHL20(2)              --------->GLK1(2) ---------->DOF2      --------->CCA1(2)      --------->TOE2(3)   atagagaaacaaaaacagcattagagagaatattgttagcattgacgaaagagagtcgaagagactgatacgaggagaactcactctcaacttcaatggc  10335900                                                             ---------->DOF2                                                            --------->AHL20(2)                      --------->ZAT2                    <-------TEIL                      <---------At4g35610              <------ZmHOX2a(2)                      --------->At4g35610             --------->AGP1                          -------                     --------->GLK1(2)                --------->ARR14(2)        --------->ANAC46             --------->YAB1                           <---------ARR14(2)        --------->ANAC58        <---------ARR11(3)                            <---------ARR11(3)        --------->ANAC58 >CBF   --------->ARR11(3)                            --------->ARR11(3)----------->GT1       <------   agacgctggagataatcagcaagaagctgagagaagaagcgatgaaacagagtcgagatccattaaagaaccgaaggtaaacaagaaactgaacaagaac  10336000                                                                                            <------ZmHOX2a(2)                                                                    <----------ID1        <------ZmHOX2a(1)                                                            <------ZmHOX2a(1)         ------>ZmHOX2a(1)                                                           --------->LBD16            =============HOX2a_HOX2a        <----------DOF2                                  <-----------RAV1(2)      --------->GLK1(2) -->ARR11(3)                     --------->MYB52(1)------->TEIL---------->DOF2    <---------ARR14(2) ---ARR11(3)              ----------->GT1----------->GT1 <---------LBD16          --------->ARR14(2)   ttgccctgttctttaactatggattgtttcgaaaaaaacagagtcgataaacgaatttctcaggagaaagaagacgaagatgagaatcctcaggatcaaa  10336100                                                                     <---------ICU4                                                                     --------->ATHB12                                                                    <---------YAB1                                                                  <---------ICU4         --------->GLK1(2)                                                                  --------->YAB1        <---------GLK1(2)                   <---------ARR11(1)                            <---------YAB1------>ZmHOX2a(2)                   --------->ARR11(3)                           --------->ARR11(3)    <---------TOE2(3)                  <---------CCA1(2)                             <---------ARR11(3)<----------DOF2       <---------TOE2(3)                 ------>ZmHOX2a(2)     --------->YAB1<---------ARR11(3)    --     ---------->DOF2                 <---------YAB1           <---------YAB1 --------->ARR11(3)    <-   tacagagcaaaggtagtttcaaatctttgagagaaccatatgatcgatctacggttttctacttatgatcatcatttgtgatctctttaagaatcgtatg  10336200                                                                                                   --                                                                                                  ---                                                                                                <----                                                                                             <-------                                                                                            <--------                                                                                            <--------                                                                                          --------->ARR14(2)                                                                                    <---------ARR11(1)                                              <------MYB83                          <---------ARR14(2)                     <---------GLK1(1)        <------MYB46(1)                       --------->ARR14(2)          ------>ZmHOX2a(2)                 <---------ANAC46                       <---------CCA1(2)    <-------GAMYB    --------->CCA1(2)    <---------MYB46(3)                     <---------ANAC55(2)   <-----------RAV1(1)            <----------DOF2    <---------YAB1              <---------ANAC58 --- ------->GLK1(1)    --------->ARR14(2) <-----------RAV1(1)                       --------->ANAC55(2) --------GLK1(1)    <---------ARR14(2)<---------TOE2(3)         <------ZmHOX2a(1)<---------ANAC58----   gatttctgttgatccaagtttggatatgtgtataatctttgatgttgttggtatgatgtttagagaggatgaggcagtcgagtccgtatccagttcgtcc  10336300    ---------->DOF2 ------->At5g28300 ------>LBD16 -----LBD16                                                        --------->YAB1 --SPL7               --------->TOE2(3)                           <---------ATHB12     ============== -ANAC58              --------->TOE1(3)                         --------->WOX13(1)     <---------TGA1a -ANAC58   <-----------HVH21                        --------->MYB111(1) ------>ZmHOX2a(1)    -------- -------->GT1      <-----------GT1     ---------->ID1     <---------ANAC58             --------->TGA1a ----->LBD16<---------MYB52(1)       <-----------RAV1(1)  <---------ANAC58--------->ANAC46   <-------   cggtaaaaaagactgtcagttttacctcaaaaatggtctgtgtcgctatagaagtagttgccgtttcaatcatcctactcaacgtccacaagtgagaact  10336400  Previous    Next  AGI:  At1g29560.1    Description:  nucleic acid binding / zinc ion binding. similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT1G29570.1); similar to mCG120171 [Mus musculus] (GB:EDL00663.1); similar to PREDICTED: similar to hCG1642996 [Mus musculus] (GB:XP_909443.3); similar to PREDICTED: trichohyalin [Mus musculus] (GB:XP_001000857.2); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) Range:  from: 10332357    to: 10335680    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g29570.1    Description:  zinc finger protein-related. similar to nucleic acid binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G29560.1); similar to 17 kDa surface antigen [Parvibaculum lavamentivorans DS-1] (GB:YP_001412400.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) Range:  from: 10335896    to: 10337840    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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