Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Publications Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   1        10        20        30        40        50        60        70        80        90        100                                                        >>>>>>>>>TBF1 <-------GAMYB<-----------HVH21                    >>>>>>>>>TBF1 ---------->GT1<------NtERF2---------->DOF2    <------ZmHOX2a(1)         ---------->DOF2   gagcgttaagaacagccgtcagactcagaccaaagaacaagacagacgaggaagaagaagaagacgattgaattgcaaaggagattagaaacagagacga  8946200                      ------>NtERF2                                                          <-------                      ----------->RAV1(1)                                                <----------DOF2                     ------->GAMYB             <-------GAMYB                          ------>NtERF2    ------>NtERF2    ----------->HVH21     ------->GAMYB                       ---------->DOF2   aatcgcagccgattcagacacagccgacataaatccgcgttacaaacgccgttgttgttccgattgcttctcaaatacccaaaaatcccgacttttaact  8946300                ----------->GT1                                                        ----------->GT1               ----------->GT1                                                  ---------->DOF2  ------>ZmHOX2a(1)                                                    <---------------AGL15 ----GT1   ---------->DOF2                          <---------ALFIN1   --------------->AGL15 --------   gttcctgttcttcaaaagagataaaaacccacaagagataagtgagacacacacacacagctacaacctaaaacccttagaagaaagaagtgtaaaaaag  8946400                                                                    <-----------RAV1(2) -->DOF2                                  ---------->DOF2   <-----------GT1                         -   ggttcttgaattaaactccgattcaaacaaaacgcaaatctttagaaagagaagaacataaattacagtcgcaggctcacagtaagcaaatataagagag  8946500                                                             ---------->DOF2     ------>MYB83  <--------P                                             ---------->DOF2         -------->P <-------- ---------->GT1                                    ----------->GT1               ------>MYB46   acgggttactattcaagtaatgatttcgtggagaaatgcagagagtttgtgatgagaaaaaaagaaagaagaaatctttcacctaccttgtgctcttttt  8946600                                 <----------DOF2                            ---------->DOF2                         <------ZmHOX2a(1)        <-------GAMYB    -------->P --DOF2            ----------->HVH21    <----------DOF2       <-----------GT1          <-----------GT1   ctgaaaattctatctgtttctctcacaggataaagctttaacctttatatgctgttagtattattcacttaccttgattttctcacttgttacgttagac  8946700                                                                ---------->DOF2                   <-----------RAV1(1)                       --------->AtLEC2                <-----------GT1           <----------DOF2------->TEIL    ----------->GT1     <-----------GT1        ---------->DOF2         <---------AtLEC2   ---------->DOF2     <---------   ccgatttttactactattttactgctggtctaaaggaaccattcctttttttttgcatgaaccattcaaaggaaaaagtaacaaatcttggaatatctaa  8946800 --ARR10                                       <-----------GT1                         <-----------GT1   tctaattttcgatgatattatcttgactaattgttttccaaattgttttaaactgctcaaaacatagtatttttagtttacttataaatttacatattga  8946900                                             <----------DOF2                                      <----------DOF2                                    ---------->ID1                                   <-----------GT1            <------ZmHOX2a(1)     <<<<<<<<<<GT-3b       <-------GAMYB  <-----------RAV1(1) <-----------GT1   cgtaaatgtggttaggaaatgttattgttgtggtatttttcttttttcttttgtgtttgtttagccaattcaaatatgtagcattcgtgaaaatactgat  8947000                                                                    ------->TEIL                                                             <------NtERF2                   <------MYB46                              ---------->DOF2               ------>NtERF2                    <------MYB83   ataaaaatatttaaatactcatttatatgtgttaaagcgtttacaaaattatcatcaatggccggccatgaatcataactagccaatatagaattaggtt  8947100  Previous    Next  AGI:  At1g25470.1    Description:  AP2 domain-containing transcription factor, putative. Identical to Ethylene-responsive transcription factor ERF116 (ERF116) [Arabidopsis Thaliana] (GB:Q8GW17;GB:Q9C6L7); similar to AP2 domain-containing transcription factor, putative [Arabidopsis thaliana] (TAIR:AT1G68550.1); similar to AP2 domain-containing transcription factor, putative [Arabidopsis thaliana] (TAIR:AT1G68550.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO42134.1); contains InterPro domain DNA-binding, integrase-type; (InterPro:IPR016177); contains InterPro domain Pathogenesis-related transcriptional factor and ERF, DNA-binding; (InterPro:IPR001471); contains Range:  from: 8944596    to: 8946615    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g25472.1    Description:  CPuORF54 (Conserved peptide upstream open reading frame 54). similar to CPuORF53 (Conserved peptide upstream open reading frame 53) [Arabidopsis thaliana] (TAIR:AT1G68552.1) Range:  from: 8944596    to: 8946615    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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