Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                 ------>MYB46(1)                         --------->ARR11(3)                           -               ------>MYB83                          <---------TOE2(3)                             <-             <---------------AGL15               --------->At4g35610                              <--             <---------MYB59                ------>ZmHOX2a(1)                                     ---             ------->GAMYB              --------->GLK1(2)                                         ---             --------------->AGL15      --------->ARR14(2)                                        <--           -------->P                   <---------ARR14(2) <---------TOE2(3)                <--------          --------->WOX13(1)           <---------GLK1(2)--------->CCA1(2)       <---------ALFIN1 <---   ctcttacaaaatcaaccaaattttgaaaacttgattctacagaatcctataagctaagatttagatttaagaccaagtagcaccactatgtaagctttag  8722300    <---------HSFB2a(2)    --------->HSFB2a(2)  ------>ZmHOX2a(1)  XXXXXXXXXXXXXXXXXXXX>MIR2111A* ----->ZmHOX2a(2) -----ZmHOX2a(2)                                       --------->MYB52(1) -------ARR11(3)                                       <---------ARR14(2)       ----------->HVH21 ------>ARR14(2)                               --------->ATHB12          --------->ANAC46 ------>ARR11(3)                   ----------->RAV1(1)<------ZmHOX2a(1) <---------LBD16       ------- -------ARR14(2)  --------->HSFB2a(2)         <-------TEIL    <---------------AtSPL8         <------- --DOF2  <-------TEIL             --------->MYB46(3)<---------TOE2(3) -------->P--------->ANAC46    < ---ZmHOX2a(1)    <---------HSFB2a(2) ------->GAMYB <---------------AtSPL8 <------ZmHOX2a(1)<--------   gatcctctagatgcaaatttccagtaatcgcattgaacaacagcgagattcattgaggaacggataagtacttaccaggaacacgacgggccaatgcgga  8722400                                                                               <---------ANAC46                                                                               <---------ANAC58                                                                               <---------ANAC58                                                                              ------>NtERF2                                                                              --------->ABI4(2)                                                                            --------->ATERF1(1)                                                                           <---------ORA47(2)                                                                           <------MYB83  --------->CCA1(2)                                                                           <------MYB46(1)                                                                           <---------DEAR3(2)                                                                           <---------ATERF1(1)                                                                          --------->MYB111(1)                                                                          <---------DREB2C(2)                                                                          <---------DEAR4(1)                                                                          <---------DEAR3(1)                            --------->At4g35610                           <---------MYB46(3)                            ----------->RAV1(2)                           --------->MYB46(2)                            <---------At4g35610          --------->ALFIN1 --------->MYB111(2)   <---- -->LBD16                 --------->YAB1                <------ZmHOX2a(1)<---------ORA47(1)    <----- --ANAC46       <---------At4g35610               --------->TGA1a      <------MYB83     <---------ARR14(2) ------ZmHOX2a(1) ----------->TGA1                <---------TGA1a      <------MYB46(1)  --------->ARR14(2) -LBD16<------ZmHOX2a(1) <---------ATHB12  --------->MYB52(1)         --------->MYB59 ----------->ARR10   gaggagagaggacgatgaagatgacgaatcatctgattcgaagcgtaagggaacgtgaggagggagagagattaggtcggtgcctggagagatttgctcg  8722500                                                                <---------DAG2                                                               <------NtERF2                                                              ------>NtERF2  --------->MYB46(3)                                                              <---------RAP2.6(3)                                              <---------ANAC46<---------ATERF1(1)                            <---------At4g35610     <---------WRKY38(1)      ------>ZmHOX2a(2)                            --------->At4g35610 --------->ALFIN1<----------DOF2                            ----------->RAV1(2)------->MYC3  --------->RAP2.6(2)             <-------                  ------>MYB46(1)           ------->GAMYB    --------->DEAR3(1)             <--------                  ------>MYB83------>ZmHOX2a(1)<-------MYC3  --------->RAP2.3(3)            <--------                <---------MYB59           <---------At5g28300--------->RAP2.3(2)  --------->LBD16                <---------------AGL15    --------->MYB52(1) --------->RAP2.3(1) <---------LBD16 -----ANAC46    --------------->AGL15  <----------DOF2      --------->ATERF1(1)--------->MYB52(1) ----DEAR3(1)  ----------------->AGL1--------->At4g35610   <---------ATERF1(1)<---------ALFIN1  <----   gtggaaatgagtccgataccaaattgagtctcctgagagagcttaaccgcgtggtgaacgaagccgccttctcgcttgatccaccggatgaggtctggtg  8722600                 ------>NtERF2                <---------RAP2.6(2)                --------->ATERF1(2)                <---------bZIP60(1)                --------->bZIP60(1)                <---------ATERF1(2)               --------->RAP2.6(3)              --------->REM1(2)             ----------->HVH21             ----------->TGA1            <-----------HVH21           ========================MYC_MYB           ------->GAMYB          <------------AtMYB77         ------>MYB83         -------->P        ------>NtERF2       <---------ALFIN1      <------NtERF2       --------->DEAR3(1)    ------>NtERF2       --------->MYB46(3)   --------->RAP2.6(2)      --------->ATERF1(1)<---------bZIP60(2)      <------NtERF2      <---------O2     ------>NtERF2<------NtERF2     <---------ATERF1(1) --------->O2    --------->RAP2.3(2)--------->CCA1(2)                           --------->GLK1(2)   --------->RAP2.3(1)<---------ARR14(2)                           --------->ANAC58   --------->ATERF1(1)--------->ARR14(2)                <---------ZAT2  <---------ATERF1(1)<------NtERF2     ----------->HVH21<---------At4g35610 --ANAC46==========================MYC_MYB              --------->At4g35610 -AtMYB61------>MYB46(1) <---------TGA1a          --------->ARR14(2) -MYB46(3)=========================MYC_MYB  ----------->HVH21      --------->ANAC58 -----MYB46(3)--------->MYB52(1)  <---------ATHB12<---------ARR14(2)                            <----   gatgaggcgccaaccgtgacggcagagacgcggccaaacatgtgaagggacggatttgagctgctagagaagctatcgccattttcgaattggccatgag  8722700                                                 --------->LBD16                                              <---------ARR14(2)                 ----------->GT1                                              --------->ARR14(2)               <------------CBF                                          ------>ZmHOX2a(2)                  <-------TEIL                                          <---------LBD16                   >>>>>>>>>>>>>>>>>LFY                                         <------ZmHOX2a(2)            ----------->RAV1(2)                  <-------TEIL           --------->ARR14(1)           <------NtERF2                  <---------ZAT14       <---------ARR14(2)            --------->ATERF1(1)                  --------->ZAT14       --------->ARR14(2)           ------>NtERF2               --------->LBD16          <---------ARR11(3)           <---------ATERF1(1)           <---------ARR14(2)           --------->ARR11(3)           <---------RAP2.3(1)           --------->TCP16(1)           --------->ARR11(1)          <---------DEAR3(1)           --------->PCF5               --------->AGP1              --------->DEAR3(1)           --------->ARR14(2)    ===============HOX2a_HOX2a        --------->ATERF1(1)          ------>NtERF2          ================HOX2a_HOX2a       --------->RAP2.3(1)         <---------ZAT18         <------ZmHOX2a(1)                <---------ATERF1(1)       --------->At4g35610 <---------ANAC58   --------->SPL7      <---------RAP2.3(1)       <---------At4g35610 <---------ANAC58 --------->LBD16       <---------ORA47(2)    ---------->DOF2   <-----------RAV1(1)--------->CCA1(2)       <---------DEAR3(1)   ---------->DOF2 -----GLK1(1)<---------LBD16    *TSS  ----------->ARR10     <---------YAB1 <---------TCP16(1)   ttccgacgaagcggacccggttcactgttgctagaggattaagatccggaccgggtttagtttttattcggcgcctgggtccattgttaaaaggaatact  8722800                   --------->MYB52(2)                 <---------MYB52(1)               --------->MYB46(2)               --------->MYB52(2)                            <---------ANAC46                       <               --------->MYB111(1)                           <---------ANAC58                  <<<<<<             <---------MYB52(1)                       <---------TOE2(3)          --------------->AGL15         <---------ANAC58                            --------->MYB52(1)          <---------------AGL15         <---------ANAC58               <----------DOF2      <---------ANAC58 <-----------GT1--------   --------->MYB52(1)       ---------->ID1      --------->AHL20(2)     <---------AHL20(2)    <-------   aaaactaatgggcttgttagttagtttttcgtcgtaaatgggcttttgaaaaaaataacgtttgcgtttgtattaaaaatttacaaaatttagttatgtt  8722900                                                                     <---------ANAC58                                                                     <---------ANAC58                                                                <---------MYB46(3)                                                                --------->MYB52(2)     <---------AHL20(2)                                         <-----------RAV1(1) <---------ICU4                                             --------->MYB52(2)           --------->At5g28300 ---------ATHB12        --------->ANAC46                <---------YAB1                  ----------->GT1 <<<MYB98             --------->ANAC46                 <---------TOE2(3)             --------->MYB52(1) --->GT1  --------->AHL20(2)                 <-------TEIL <---------MYB52(1)     --------->YAB1------ --YAB1   <---------AHL20(2)      <-----------GT1 <----------DOF2<-------GAMYB  <-------TEIL  -------   aaatcatttttttttaatatgcatacaccaaaaattttacaaatgagttcatctttttatgttagtttgttgcgaaccaaaattcataaacggtaaataa  8723000                                ---------->DOF2                  --------->ARR14(2)                 <----------ID1   <---------MYB52(1)        --------->AtLEC2      ---------->DOF2                                  < --->YAB1 --------->ATHB12--------->MYB46(3)    --------->TOE2(3)                                 <-- -->AHL20(2)      <---------ARR14(2)    ----------->GT1  ---------->DOF2 <-----------GT1      -------   aaatcgttttgttcattgcaaatttggaaccattcaaagcatttgtaaaaacttaaagacaaagatgaacagatgttacattttgatgttcgattatcaa  8723100                                  <------MYB46(1)                                  <------MYB83                       <---------YAB1                                 --------->MYB59                   --------->ATHB12                                 <---------------AtSPL8            <---------ICU4                                 --------------->AtSPL8            -------->HAHB4          --------->ATHB12                            --------->AHL20(1)                    <---------ATHB12        <---------YAB1                            <---------AHL20(2)                    <---------YAB1       --------->AHL20(1)    <------MYB83            <---------AHL20(1)         <---------AHL20(2)              <---------AHL20(1)    <------MYB46(1)         --------->AHL20(2)         --------->AHL20(2)      --------->GLK1(2) ---------ARR14(2) <---------AHL20(2)   --------->ANAC46          --------->ICU4 ----------->GT1 -------ARR11(3)<xxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------YAB1  <---------TOE2(3)     <---------AHL20(2) -->YAB1 <---------YAB1    --------->AHL20(2)    --------->AHL20(2)--------->YAB1--------->YAB1   catatttggttcttatactaaatatttgaataaatttggtaccctaaacttataaatataaatttctaatgattagtgaagaatcgtaatatatgatttg  8723200  Previous    Next  AGI:  At1g24610.1    Description:  SET domain-containing protein. similar to ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase, putative [Arabidopsis thaliana] (TAIR:AT1G14030.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42354.1); similar to Os02g0733800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048036.1); contains InterPro domain Rubisco LSMT substrate-binding (InterPro:IPR015353); contains InterPro domain SET; (InterPro:IPR001214) Range:  from: 8720637    to: 8722732    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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