Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     --                                                                                                 <---                                                                                                -----                                                                                                -----                                                                                                -----                                                                                               ------                                                                                              ------- ---------AHL20(2)                                                                            ------- -----AHL20(2)                                                                               -------- ----HAHB4                         --------->TOE2(3)                                        ------>MYB46(1) ---->ATHB51                     -------->P                                                 ------>MYB83 ---->AHL20(2)                  <-----------GT1                                           --------->MYB46(3) --->ATHB1                      --------->MYB52(1)                                        <---------MYB55(2) ----ATHB51               <------ZmHOX2a(1)                                             --------->PCF2 --->ICU4               <---------TOE2(3)   <----------DOF2        ------->TEIL <---------AHL20(2) -- ----ATHB12   ---------->DOF2 <---------MYB52(2) --------->HSFB2a(2)            --------->AHL20(2) <-   atttatagacttaggccaaagacactgaggaaactaacctcattagcttttctcgagtctctctcaatggacttggaccattttaaatgcgacccaccaa  7559900       --------->TOE1(3) ------->ANAC55(1) ------ALFIN1 ->MYB83  ----------->ARR10                           <---------ANAC58 ->MYB46(1)                              ================================HOX2a_HOX2a --->P --------->TOE2(3)                 ------>ZmHOX2a(2) ----->RAV1(1)                         --------->ARR11(3)                       <----------DOF2 -->MYB46(3)<---------ARR11(3)         <---------ARR11(3)            <---------YAB1 -->AtMYB61 <---------GLK1(2)     --------->MYB52(2)  <---------ANAC46<---------ICU4 ->MYB46(3) --------->ARR11(3)  <---------MYB52(1)    <---------ANAC58--------->ATHB12 ------->ANAC55(2)       <---------ARR14(2)  ----------->GT1         --------->ICU4  --------->At4g35610 --------ANAC55(2)       --------->ARR14(2)  <---------ANAC46     ------>ZmHOX2a(1)  <---------At4g35610   cacttaataccttagattttctgagggaatacccattagttgatcttgtgtaaattgtgtgtctcttcctcatcattgacaactttcggctgaagataga  7560000                                              --------->ANAC58                                         ------>NtERF2                                         --------->At4g35610                                         <---------At4g35610                                      <---------At4g35610                       ------>MYB83                                      --------->At4g35610                       ------>MYB46(1)            <---------YAB1       --------->DAG2              <----------DOF2  <---------MYB59  <-----          --------->YAB1         <---------TOE2(3)          <---------DAG2   --------->ANAC55(2)         <---------YAB1        ---------->DOF2--------->ANAC58   <---------At4g35610           <-----   atggccctgttatcatgtttgcaaacacaaaaaaaaaggttgcagcccaaggaaaatgagcacctttagatgctaacatacctaatgttgagagaagaac  7560100                                                       --------->ANAC46                                                      <---------LBD16                                                      --------->LBD16           <---------YAB1                                                <----------DOF2              --------->GLK1(2)                                         <-----------HVH21           <------NtERF2                                        --------->ANAC46            --------->LBD16              ----                                        <---------ANAC55(2)        <---------ANAC58            ------        --------->At4g35610             --------->ANAC58           <---------ANAC58            <-----        <---------At4g35610             --------->ANAC58           <---------RAP2.3(2)       --------     ---------->DOF2       ----------------------->TaNAC69(2)      <---------RAP2.6(2)     <-------MYC3 ------------AG        --------->TOE2(3)--------->ANAC55(2)       <---------LBD16          ------->MYC3 ------------AGL1    <-------TEIL      --------->SPL7<---------LBD16<---------RAP2.3(1)   --------->TGA1a   catttcggaaagcagacactgagttcattaatcttctccagtacgtcactcttttccagggaacaagttgcggcacaatattctgatttcgcatgtgagc  7560200                           <---------ANAC58                   <------ZmHOX2a(2)                  --------->ARR14(2)                  <---------ARR14(2)                                             <---------ATHB12                --------->LBD16                                              ------------>CBF               <---------ANAC46                        <----------DOF2      ------>NtERF2              <---------LBD16                         <---------ANAC58   --------->At4g35610             <---------ERF1<---------ANAC58           <---------ANAC58   <---------ZAT2            <---------RAP2.3(3)                       <---------ANAC46   --------->ZAT2        ------ ----->CCA1(2)<---------At4g35610                  <---------WOX13(1)    <---------At4g35610 <------- --->At4g35610--------->At4g35610               <---------YAB1      ----------->HVH21---------->DOF2 ----At4g35610<------NtERF2<---------ANAC46   <----------DOF2 <-----------HVH21--------->WOX13(1) ->ZAT18    <---------DEAR3(1)   --------->ANAC46--------->ATHB12 <---------AtLEC2--------->YAB1   tatgggcattcttggctgcggatcattttgcgtccaaaccagagaaaactttgattgcttaaatggtcgcatgacagctgccaatcaaaaagaaggcgag  7560300                     <---------TOE2(3)                     <---------YAB1                     <---------TOE1(3)             <----------DOF2        <---------ANAC58        <---------ANAC58                                                          <-----------GT1      <---------ARR11(1)                                                      ------->TEIL      <---------ARR14(2)                                                 --------->GLK1(1)      <---------ARR11(3)                                              <---------YAB1      --------->ARR14(2)                                           --------->GLK1(2)      --------->ARR11(3)             --------->ANAC58             <---------GLK1(2)     <---------CCA1(2)----------->GT1--------->ANAC58             <---------ARR14(2) ----->GT1  <---------ANAC58 --------->AHL20(2)                   --------->ARR14(2)      <------ZmHOX2a(1) --ANAC46   <---------ANAC58 <---------AHL20(2)             ---------->DOF2  <---------AtLEC2  ------   taacttcatatcttgcttttgttatggttaaaaaaatgcaagaaaaaaaacaagtatacatagaaagggattctgatatgcatgttactgtaggaaaaca  7560400                                                               <----------DOF2                                        --------->ANAC58    ---------->ID1        --------->MYB46(3)                                      ---------->DOF2    <---------DAG2          ------>MYB46(1)                                  --------->ANAC58   <-----------GT1             ------>MYB83                                  --------->ANAC58 <---------ICU4             --------->MYB46(3)        --------->KAN4(2)    <------ZmHOX2a(1)    --------->AHL20(2)        <-----------GT1   ----------->GT1          <----------ID1        <---------ATHB51   <---------At4g35610 --->ZAT6                ---------->DOF2--------->ANAC58 <----------DOF2 <---------KAN4(2) <---------   ctagatagtttattctcaaaaaaaaaaaaaaggactaagccaaagcaaacaaattattccttttccttttcagcgaataaaccatccactgtttatccaa  7560500                                                <---------ANAC58                                            <----------DOF2                                     <---------RVE1(1)                                     <---------CCA1(1)                                    --------->ARR11(3)                       ---------->DOF2   <-----------GT1                                            <               <---------GLK1(2)    <---------ARR11(3)  --------->MYB52(1)                   --------             ----------->ARR10 --------->MYB52(1)<----------DOF2                            ---------        <---------YAB1 --------->MYB46(3)<---------AHL20(2)   <-----------HVH21             --------- --GT1  ------>ZmHOX2a(1)     ----------->HVH21 <---------ANAC58                        <----------DOF2   atgaacagtcctgataagatgctcaacaagcgctaacagatatttactttgctttacataccagagtcagagaatgctgagctagatggtctttccgaaa  7560600                   ------->TEIL          ----------->HVH21                                                      <---------At4g35610        --------->At4g35610                                                ------>ZmHOX2a(1)        <---------ZAT2                           <---------WOX13(1)       <---------ANAC58 ---------YAB1    <---------CCA1(2)    --------->ANAC58               --------->GLK1(1)           <-- ->LBD16<---------At4g35610            --------->ANAC58    --------->MYB46(3)    --------->At4g35610- >HSFB2a(2)   ------>ZmHOX2a(2)    --------->ANAC58  <---------WOX13(1)   <---------ANAC58<---------- >ANAC46--------->ZAT2             --------->ANAC58--------->ATHB12   <---------GLK1(1)<---------ICU4   ccatgtttgcagctgatcgtgtatctaatgcatcatcaggcaaggaaattgactgattgcaacggctctctgaattccttactagctgatttttacttcg  7560700                                                               --------->AtMYB61                                                               ------->GAMYB                                                              --------->MYB46(3)                                                              <---------MYB55(2)                                                              <---------MYB52(2)                                                             --------->ANAC58                                                       --------->At4g35610                                                <---------ARR14(2)                      --------->GLK1(2)         <---------ARR11(3)                      --------->ARR14(2)        --------->ARR14(2)      <-----------GT1                      <---------ARR14(2)        --------->GLK1(2)------>MYB83                     <---------GLK1(2)          --------->ARR11(3)  --------->ATHB12         <-----------HVH21                     --------->RVE1(1) ------>MYB46(1)        --------->ANAC46                       <---------GLK1(1)--------->MYB52(1) --------DOF2--------->At4g35610              ------->TEIL   --------->ANAC58 --------->DOF2 <------ZmHOX2a(1)          <---------YAB1    --------->ANAC46 -GT1  --------->MYB46(3)             --------->REM1(1)<---------At4g35610  <----------DOF2   cttaaagtacccatcagaggaaggaatctggttctgacttacatcatgaatatctgaagctgcaaccaactgatttgcctttctcttgacatataccatt  7560800  Previous    Next  AGI:  At1g21570.1    Description:  zinc finger (CCCH-type) family protein. similar to ATCPSF30/CPSF30 [Arabidopsis thaliana] (TAIR:AT1G30460.2); similar to ATCPSF30/CPSF30, RNA binding / calmodulin binding / endonuclease/ nucleic acid binding / protein binding [Arabidopsis thaliana] (TAIR:AT1G30460.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61926.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) Range:  from: 7557251    to: 7560272    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g21580.1    Description:  hydroxyproline-rich glycoprotein family protein. similar to Subtilisin-like serine protease [Pediococcus pentosaceus ATCC 25745] (GB:YP_803612.1) Range:  from: 7560554    to: 7565792    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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