Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                >>>>>>>>>E2Fc              >>>>>>>>>E2Fd             --------->LBD16             ------>NtERF2             <xxxxxxxxxxxxxxxxsmallRNA(i)     ---------->DOF2            --------->ANAC58               --------->ANAC58            --------->ANAC58      --------->ARR14(2)        <xxxxxxxxxxxxxxxxsmallRNA(i)   ------>NtERF2   <---------TOE2(3)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       ------>ZmHOX2a(1)           -------  <-----------GT1    --------->ANAC58 ------>NtERF2             <---------ANAC58          <----------  xxxxxxxxxxxxxxxx>smallRNA(s)    <---------ARR14(2)   <-----------GT1              <---------TOE2(3) <-----------GT1     --------->ANAC58 --------->LBD16 ----------->HVH21            <-----------GT1 -------->AHL20(2)   --------->ANAC46<---------RAP2.6(2)        <---------ANAC58  <-----------GT1 -->ANAC58  --------->ANAC46     <---------GLK1(1) --------->ARR14(2)      --------->ANAC58   ------>NtERF2 -->ANAC46  <<<<<<<<<<E2Fa       --------->GLK1(1)<------ZmHOX2a(1)        --------->ANAC46  -------- -->ANAC58 <---------LBD16  --------->YAB1 --------->ANAC58   <-----------GT1    --------->AHL20(2)-- ->DOF2<xxxxxxxxxxxxxxxxsmallRNA(i) <---------LBD16<---------ARR14(2)      --------->ANAC58 <--------   aatttaacattttcccgccaaaaacgacattcagcatttccggccaagaaaaggatttgacatttttcctgccaaaaacgcaatttaacatttttccgcc  6743900                                                                                                 ----                                                                                            ---------                                                                                            <--------                                                                                            <--------                                                                                            ---------   --------->ANAC58                                                                         <--------   --------->ANAC46                                                                         ---------   --------->ANAC58                                            <---------AHL20(2)          --------->AHL20(2) -->LBD16   <---------TOE2(3)                           --------->AHL20(1)             --------->AHL20(2) -GT1      <-----------GT1                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <---------AHL20(2) ->ANAC46 <-----------GT1                   <-----------GT1  --------->ANAC55(2)     --------->AHL20(2) -------->DOF2                          <---------DAG2  <---------AHL20(1) --------->AHL20(2)    <--- -LBD16  --------->AHL20(2)             <----------DOF2--------->AHL20(2)  <---------AHL20(2)<-------   aaaaaacgcaatttaacattttcccatcaaaaacgaattcaacttttttcccatcaaatatatatgtaattcagaaaataaatacaatttaaaatatatt  6744000 --------->ANAC58 --------->ANAC58 --------->ANAC46                                                                            <xxxxxxx ----->YAB1                                                                              --------->ANAC46 >AHL20(1)                  --------->YAB1                                           xxxxxxxxxxxxxxxx -AHL20(1)                 <---------AHL20(2)                                        --------->GLK1(1) -ARR11(3)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                      <---------GLK1(1) >ARR11(3)                --------->AHL20(2)                                        --------->ARR14(2) -AHL20(2)              --------------->AGL15                                       <---------ARR14(2) >AHL20(2)            <-------TEIL                                  xxxxxxxxxxxxxxxx>smallRNA(i)    < ------AHL20(2)<-------TEIL<---------YAB1        --------->YAB1    xxxxxxxxxxxxxxxx>smallRNA(s)   <xx --AHL20(2)   --------->CCA1(2)           ----------->GT1       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   tataagcaaaatatagatacaatatacatataatagtatattagcagttaaacataaactctaagaaaatgacagaaaccaagttggatacccacaagta  6744100          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          --------->YAB1          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       --------->WOX13(1)      --------->MYB46(3)     <---------KAN4(2)   xxxxxxxxxxxxxxxx>smallRNA(i)        --------->AHL20(2) <xxxxxxxxxxxxxxxxsmallRNA(i)         --------->AHL20(2)                                xxxxxxxxxxxxx xxxxxxxxxsmallRNA(i)           ------>MYB46(1)               <------MYB46(1)          --------->ZAT2 xxxxxxx>smallRNA(le3)          ------>MYB83                  <------MYB83             <---------ZAT2 ---------LBD16          <----------DOF2                    <--------P             --------->ALFIN1<- xxxxxxxxxxxxxxsmallRNA(s)    --------->MYB46(3)  <---------TOE2(2)           <-------TEIL    <------   gtctcggaacaatcaggtttttttgggctttacccactaaataaaaaacccataggtttttggtaggggttttttttgggttcaagtcgggctgggcttt  6744200            ------->GAMYB          --------->At4g35610      <---------ALFIN1      --------->AtMYB61     --------->MYB46(3)    ------>MYB83    ------>MYB46(1)   --------->MYB55(1)   --------->ANAC46                                                            ----------->GT1      <  --------->MYB46(3)                     <---------TOE2(3)               ---------->DOF2            <  <---------MYB55(2)       --------->ANAC58                           ----------->TBP   ------------- xxxxxxxxxx>smallRNA(si3)  --------->ANAC58                         <----------DOF2---------->DOF2<-- ----------GT1             --------->ANAC46                         --------------->AGL15     ------- ----DOF2 <---------At4g35610       <----------DOF2                 =================================   tttacccaccacaactgcctataacctataagctatcacttttaagaaatactaagtagccgagtttgggctttaaaaaggaagtaaaagcccatataaa  6744300        <---------ANAC58                                      ----------->ARR10        <---------ANAC46                                    <---------At4g35610        <---------ANAC58                                <---------DEAR3(1)  --------->At4g35610                                 --------->MYB52(1)  <---------At4g35610                         --------->CCA1(2)     <----------DOF2                 - ---------WRKY38(1)                          --------->ARR11(3)  --------->GLK1(2)               ---- ---------WRKY12                             <---------ARR11(3) <---------ARR14(2)           >>>>>>>> ---->AGL3                             <---------HSFB2a(2)  --------->At4g35610       =============== ---------HVH21    <---------ALFIN1<----------DOF2   ----------->HVH21                --------->LBD16 --->DOF2<-----------HVH21--------->SPL7    *TSS  --------->DAG2--------->ARR14(2)    ------>ZmHOX2a(1) =====MADS_MADS  <---------ALFIN1--------->ZAT18 ---------->DOF2<---------GLK1(2)   ----------->RAV1(2)   ggtcatcggagcgtgagagccactctcgtacagagcgcgttagagaagatataaagcgacggagcagattctttttcttccctctctcctgagaagaaga  6744400                                       ------>ZmHOX2a(1)                            ------------>MYB.PH3(2)     --------->GLK1(2)            <------ZmHOX2a(2)         --------->TOE1(2)<---------GLK1(2)             <-----------GT1           <---------ARR11(3)  --------->MYB52(2)      --------->ARR14(2)        <---------AHL20(2) --------->DOF2       ------>NtERF2   --------->TOE2(2)<---------ARR14(2)        --------->AHL20(2) ------->GT1==================================HOX2a_HOX2a                       --------->AHL20(2) >TBF1     --------->ARR11(3)<---------MYB52(1)  <---------GLK1(1)    <---------HSFB2a(2) ==================HOX2a_HOX2a --------->MYB59   --------->GLK1(1)    --------->HSFB2a(2)    <-------   agtaaagaagtaagatcaattctcggccgtagttagttatcctccgaatagatttccgattctctgtttcttctagattgaatttaaaaaccctactttt  6744500                                                                                       ------>MYB46(1)                                                                          <---------ARR14(2)       --                                                                          <---------GLK1(2)     -----                                                                          --------->ARR14(2)  <------                                                                        --------->ANAC46    <--------                               --------->MYB46(3)                   <---------ALFIN1   ------>MYB83<-                       <---------DAG2                           --------->ANAC58     --------->TOE2(3)                 --------->WOX13(1)                          --------->MYB46(3)--------->YAB1-------- ---DOF2       <---------KAN4(2)------->GAMYB  ---------->DOF2  --------->ANAC58     <---------MYB59   gaattttcacatgggagaacaatcaccttctcaaccatcgactcaatgccaaagtcatccacaatcacccaaacccgatactcataacctaatcccaccg  6744600     --------->DEAR3(1) --------->MYB46(3) ------->ARR14(2)       <---------At4g35610 ---->LBD16             ----------->RAV1(2) ---LBD16               --------->ZAT2                  --------->TOE2(3)        <---------ZAT14 -ALFIN1                <---------ZAT2                -------->P     ----------->HVH21              - --------ARR14(2)     <-----------RAV1(2)          <---------At4g35610           --------->ZAT14    < ->MYB52(1)------->TEIL --------->At4g35610        --------->At4g35610      <------ZmHOX2a(2)  ------   gaatccaccgatgaatgtctcgattcagctggagtttcaggctcaatcgtctcatctaccacaatcgacgctcgacggatcactgaactaggcaatgtat  6744700       ------>NtERF2       --------->ORA47(1)      --------->DEAR3(1)                                                                    <--------      --------->RAP2.3(2)                         --------->ANAC46                          <--------      --------->RAP2.6(2)                --------->ARR14(2)                                 ---------     --------->RAP2.3(1)                 <---------ARR14(2)                                 ---------     --------->ATERF1(1)              <---------HSFB2a(2)                                  --------->GLK1(1)     --------->ORA47(2)            <---------ARR14(2)                                      <---------GLK1(1)    ------>NtERF2                  --------->ARR14(2)                                     <---------ARR14(2)    <---------ATERF1(1)            --------->GLK1(2)                                      --------->ARR14(2)    --------->LBD16               <---------GLK1(1)                                   <------NtERF2   --------->ANAC46               <---------HSFB2a(1)        --------->O2           <---------DEAR3(1)   --------->DEAR3(1)             --------->GLK1(1)          <---------TGA1a        --------->ALFIN1  <---------LBD16                ---------->TaMYB80  --------->MYB52(1)  --------->ICU4   --------->ARR11(3)  --------->ATERF1(1)       <---------LBD16     --------->ZAT6      --------->LBD16<---------LBD16 <---------ATERF1(1)      --------->DEAR3(1)    <---------ALFIN1  <---------LBD16--------->DAG2 -------->ARR14(2)      ------>NtERF2<---------LBD16----------->HVH21<---------------------WRI1   --- ---------ARR14(2)     --------->ANAC46--------->LBD16       <---------O2<---------YAB1  <------ZmHOX2a(1) ->TEIL<---------SPL7  --------->DEAR3(1)<---------GLK1(2)   --------->TGA1a<---------YAB1<---------ARR11(3)   cgtctccgccgtccaaaatccctctccgccctcggaaaatccggaaactcacactcgacggagacgtctccggtgaagattataaggcggaggatatctc  6744800  Previous    Next  AGI:  At1g19480.1    Description:  HhH-GPD base excision DNA repair family protein. similar to HhH-GPD base excision DNA repair family protein [Arabidopsis thaliana] (TAIR:AT1G75230.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN72984.1); contains InterPro domain DNA glycosylase; (InterPro:IPR011257); contains InterPro domain HhH-GPD; (InterPro:IPR003265) Range:  from: 6744344    to: 6746399    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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