Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                              ------>NtERF2                                                                                            ---------                                                                                            <------NtERF2                                                                                           --------->DEAR3(1)                                                                                           --------->RAP2.6(2)                                                                                           --------->RAP2.3(2)                                                                                          --------->RAP2.3(1)                                                                                         --------->LBD16                                                                                         --------->At4g35610                                                                                         <---------ATERF1(1)                                                                                         ------>NtERF2                                                                                        --------->ANAC46                                                                                 <----------DOF2                                                                             --------->ANAC46                                                                             --------->ANAC58           <---------ARR11(3)                                                --------->ANAC58    ----         <---------YAB1                                                    <---------ALFIN1--------->RRTF1(2) ----ZmHOX2a(1)        --------->AtLEC2                                    --------->MYB52(1)   ----- -----TOE2(3) <-----------GT1                                 --------->AGP1<---------LBD16----------   ggaagcatatcaagataaactctccatgaagactcttcttcatacttctctctgatcaaaaacagagctactgaaacccacggctttaatccgccgcata  4807100                                                     --------->GLK1(2)                                                     --------->ARR14(2)                           ---                                                     <---------ARR14(2)                         -----      <---------ATHB12                              <---------GLK1(2)                 --------->ANAC46  ----------------->AGL1                            <---------GLK1(1)                 --------->ANAC58 >LBD16                    <---------LBD16    <---------ANAC58                        --------->ANAC58 ----->DAG2         <---------At5g28300       <---------ANAC58                    <---------ARR11(3) ----->DOF2   <---------At4g35610             <---------ANAC46                    --------->ARR11(3) ->RAV1(1)    --------->At4g35610     --------->ANAC46                 <---------CCA1(2)----------->RAV1(2)   aaggtccaatcttggaagcagtcactgtctctgggtttatccacaatcgcttgggaatctccaatacgacctcgtttcttccaatatcacgcctggctac  4807200                        <---------TOE1(2)                        <---------TOE2(2)                       ======================RAV                       <-----------RAV1(2)                    --------->ANAC46                  --------->AtMYB61                  <---------ALFIN1                 <---------ABI4(2)                 --------->MYB46(3)                --------->SPL7            --------->HSFB2a(2)            <---------HSFB2a(2)           <---------LBD16 --------->ARR14(2)   --------->CCA1(2)          ------>MYB46(1)--------->HSFB2a(1)   <---------ARR14(2)                     --------->LBD16          --------->MYB52(1)                   --------->ARR14(2)                 --------->GLK1(2)          ------>MYB83--------->LBD16       --------->LBD16                  --------->LBD16     ----       <---------HSFB2a(1) <---------ARR14(2)--------->LBD16                --------->HSFB2a(2)  ----       --------->HSFB2a(1)<---------GLK1(2)<---------LBD16                  <---------HSFC1(1)   ----     <---------ALFIN1--------->DEAR3(1)    <---------HSFB2a(2)              --------->HSFC1(1)  <---- ------>ANAC46<---------MYB52(1)           --------->HSFB2a(2)              <---------HSFB2a(2) <---- ---->REM1(1)--------->LBD16     ----------->RAV1(1)                 ----------------->AGL2    <-----   aagtcccaaaccttccggtaccaccgcaggttctgccacagacttcccggatacgactccttggtctctgagccatttccagaaattccgaacattttcc  4807300                                                     ---------->DOF2                                                 --------->HSFB2a(2)                             ----                                                 <---------HSFB2a(2)                             ----                                         <---------ANAC58                                      <-----                                         <---------ANAC46                                     ------- ----->ANAC46                            <---------ANAC58                                    -------- ----->LBD16                          --------->GLK1(1)                                 <---------LBD16 -->NtERF2                            <---------GLK1(1)                                --------->MYB52(1) -----LBD16                      ---------->DOF2----------->GT1                       ----------->HVH21 -----ETT(1)   --------->At4g35610   --------->ARR11(3)                       ======================= ----LBD16     <---------At4g35610   <---------ARR11(3)    ---------->DOF2    <----------DOF2<-------   ggcaactctgagcttgaagctgaaatgggtctcaccaaagatttcttgggtcgagaaaagagaaaggaagggttttgagacttttgaattgacgggatac  4807400                     <---------ANAC46                    <------NtERF2                    --------->ATERF1(1)                   <---------ATERF1(1)                   ------>NtERF2                  <---------DEAR3(1)                  --------->DEAR3(1)                  ----------->HVH21                 <------NtERF2                 --------->RAP2.3(1)                 --------->ATERF1(1)                <---------RAP2.3(1)                ------>NtERF2                <---------ATERF1(1)               <---------DEAR3(1)              --------->RAP2.6(3)             --------->MYB52(1)            --------->ANAC46            --------->ANAC58       --------->ANAC46       --------->ANAC58       ----------->HVH21                              <--------P       <---------ETT(1)                             <------NtERF2       --------->ANAC58                            <---------MYB46(3) ----->LBD16--------->ANAC58                       --------->MYB55(2) ------->GT1----------->HVH21                     <---------ANAC58                        --------->YAB1 ----LBD16  <---------TGA1a          <---------MYB46(3)    <---------YAB1                 --------->AHL20(2) -->CCA1(2) --------->O2  <---------At4g35610     <---------ANAC46                     --------->YAB1 ->ARR14(2) --------->TGA1a ----------->HVH21    <---------LBD16             <---------ANAC46 =====================bZIP_DOF <---------bZIP60(2)<---------ANAC58           --------->ALFIN1 --ARR14(2) <---------O2  --------->At4g35610  <---------DEAR3(1)          --------->ALFIN1   ggagaaaacccgacacgacggcgacggaggctgacatggtggttttccgatggcgggtagtatcagtgaaacagagagtgtgtggataacaataatatca  4807500                                               <-----------GT1                               <---------ARR11(3)        ---------->DOF2     <----------ID1     <----                               --------->GLK1(2) ------------>CBF         ---------->DOF2    <-------                               --------->ARR11(3)<---------YAB1    <---------ICU4            <-------               <---------MYB46(3)  ----------->GT1    --------->YAB1 <---------YAB1      --------->REM1(1)              *TSS     <----------ID1   <---------YAB1--------->TOE2(3) <---------HSFB2a(2)  --------   catcagttttttctaagttgttgatgagacaaaaatctagttattctagttaccaatgttaaaggcccattattctaaaaggccaaggcctacattttat  4807600                                                                 <-----------GT1                   ----------->GT1                              <-----------GT1               --------->AHL20(2)                   --------->AHL20(2)                       <-------        ----------->GT1                             <---------AHL20(2) <---------YAB1      ---------- -----YAB1     --------->AHL20(1)        <---------YAB1     <----------DOF2     --------->REM1(1) --AHL20(2)    <---------AHL20(2)       <-----------GT1  <-----------GT1  <--------P   <----------DOF2 --AHL20(1)   <---------AHL20(2)    --------->AHL20(2)   --------->ARR11(3) <---------At4g35610 ->AHL20(2)   --------->AHL20(2)    <---------AHL20(2)   <---------ARR11(3) --------->At4g35610   ttttgttctgatgtaattaaattgttaattgtctgtatttattttcatttttaaaaaattatctttttaacttatggtagcttcaacttctttttctttt  4807700                                                                          --------->O2                                                                     ----------->HVH21                                                                   <---------ANAC58                                                                   <---------TGA1a                                                                   <---------ANAC58                                     <---------WRKY45         --------->At4g35610        --------->ANAC55(2)                          ----------->GT1            --------->TOE1(3)    <---------O2  --------->MYB59                --------->TOE2(3)    <---------WRKY38(1)  --------->ARR14(2)       --------->AHL20(2) ---DOF2 <---------At4g35610         <---------WRKY12--------->TOE2(3)    <---------TGA1a<---------ANAC55(2) >ID1    --------->At4g35610        --------->WRKY18(1)  <---------CCA1(2)--------->TGA1a----------->GT1   ttttttttgtcatctcaacctttgtaagaagaaaaatggtcaactatagcttcaacctcaaatctactgacttgacacttgagttttaaataggtaacat  4807800                <-------TEIL              --------->YAB1        =============================HOX2a_HOX2a        ------>ZmHOX2a(2)       <------ZmHOX2a(2)       ==============================HOX2a_HOX2a      --------->ARR11(3)      <---------ARR14(2)                            --------->REM1(1)      --------->ARR14(2)                   ----------->RAV1(1)      <---------ARR11(3)            <---------ARR11(3)     <---------GLK1(1)              --------->ARR11(3)     --------->GLK1(1)        ------>ZmHOX2a(1)----------->GT1   ctcatggagatcccaatattcattctaaattcctccaagataatgcaacatgttacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaa  4807900                                                                               <---------ICU4                                                                            --------->YAB1                                                                         <---------ICU4                                              <---------CCA1(2)          --------->YAB1                                            --------->AtMYB61           <---------YAB1                                          ------>MYB83                --------->YAB1                                          ------>MYB46(1)             <---------ICU4                                         --------->ANAC46            <---------YAB1                                        <---------MYB111(1)        <---------ICU4                                        <---------MYB55(2)         --------->YAB1                                        --------->MYB46(3)        --------->ICU4 <---------YAB1                                      ------->TEIL              <---------ICU4 --------->YAB1                  <------NtERF2      <-----------GT1            --------->YAB1<---------YAB1     ---------->DOF2              --------------->AtSPL8     --------->YAB1 <---------ICU4 ----------->RAV1(1)              <---------------AtSPL8  --------->TOE2(3)<---------YAB1   ---------   caacaacaaaagagattggccgagacatatatgtagtatgtacccaccatatcacacataccttcataatcatcatcatcatcataatatcaagtggtct  4808000  Previous    Next  AGI:  At1g14030.1    Description:  ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase, putative. Identical to Probable ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor (RBCMT) [Arabidopsis Thaliana] (GB:Q9XI84); similar to SET domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G07670.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68462.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN82664.1); contains InterPro domain Rubisco LSMT substrate-binding (InterPro:IPR015353); contains InterPro domain Rubisco methyltransferase; (InterPro:IPR011192); contains Inter Range:  from: 4805303    to: 4807514    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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