Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 ------                                                                                             ------>ZmHOX2a(2)                                                                                             <-------                                                                                             --------                                                                                             --------                                                                                             <-------                                                                                             ========                                                             --------->ANAC58               =========                                                             --------->ANAC58               <------ZmHOX2a(2)                                                            <---------ZAT18                --------->ARR11(3)     --------->ZAT2                                         --------->ZAT18                <---------GLK1(2)     <---------ZAT2               --------->YAB1   --------->YAB1                          <---------ARR11(3)     <---------At4g35610     <---------YAB1       <---------ATHB12                         --------->ARR14(2)     --------->At4g35610   --------->CCA1(2)     --------->ANAC58                          <---------ARR14(2)   --------->ZAT18      --------->ANAC58         --------->ANAC58                       --------->HSFB2a(2)   <---------ZAT18      --------->ANAC46        --------->WOX13(1)                      --------->HSFC1(1) ------->DAG2           --------->ANAC58       --------->MYB46(3)  --------->TOE2(3)    <---------HSFB2a(2) ------->DOF2         --------->ZAT6 --------->ARR11(3)---------->DOF2    <----------DOF2  --------->AGP1   aaaagtgagctcgatatagcattaacacgatatgaataagaaattgacaacaatcaacaaagcacactacctcaagctttctcaactcttctagatcctt  3388000 <---------ALFIN1 --------->ANAC58                                                <---------ANAC58 --------->ANAC46                                                <---------GLK1(2) --------->ANAC58                                 ------>ZmHOX2a(1) >ZmHOX2a(1)                              <----------DOF2        <---------ANAC58 --HSFC1(2)                             ------>ZmHOX2a(1)------>ZmHOX2a(2) ->HSFC1(2)                             ========================HOX2a_HOX2a                  -------- ->HSFB2a(1)       --------->ANAC46  ------>ZmHOX2a(1) <---------ARR11(3)                  ------>ZmHOX2a(1) --HSFB2a(1) ------>ZmHOX2a(1)       ===========================HOX2a_HOX2a     <----------DOF2 ===================HOX2a_HOX2a=================================HOX2a_HOX2a  <---------ARR11(3) ===================HOX2a_HOX2a------>ZmHOX2a(1)  ==============HOX2a_HOX2a  --------->ARR11(3)     -   ccaacgcctctcttcctcttcccgcttcgcttcctcttcctcctctttcttcctcttgatctccatagcttctctccaagctctttcactctcctcaaag  3388100                                                                      ------>ZmHOX2a(2)                                                                      ==============================HOX2a_HOX2a                                                                      ----------->GT1                                                                     ===============================HOX2a_HOX2a                                                                     <------ZmHOX2a(2)                                                                    --------->ARR14(2)                                                                    <---------ARR14(2)                                                                  --------->LBD16                          <---------ARR14(2)                    <---------LBD16                       --------->ANAC46                        ------>NtERF2                      --------->LBD16                          --------->LBD16                      ------>NtERF2                          <---------LBD16                      <---------LBD16    ------->GAMYB     --------->ARR14(2)                    <---------LBD16--------->TOE2(3)     ------>ZmHOX2a(1)             <-----------GT1  ------>ZmHOX2a(1)          ====================HOX2a_HOX2a -->DOF2 <----------DOF2  --------->ARR14(2)             ===================HOX2a_HOX2a ----->ZmHOX2a(1)  ------>ZmHOX2a(1)------>ZmHOX2a(1)  ----------->RAV1(2) <-----------GT1   ------>ZmHOX2a(1)   tccttcaactccttttctctcctccgcgcatcctcttcctcaatcgccttcaatctctcctgttccgccggatcgtttaacttagccttcgcttcctccc  3388200                                                                                            ---------                                                                                     <----------DOF2                                                                                     <---------DAG2                 ------>ZmHOX2a(1)                                                 ------>NtERF2        --------->LBD16                                                           --------->RAP2.3(2)        ------>NtERF2                                                           <---------ATERF1(1)        <------NtERF2                                                           ------>NtERF2       --------->RAP2.3(2)                                                      --------->LBD16       --------->RRTF1(2)                                                      --------->DEAR3(1)       --------->RRTF1(3)                                                      --------->ANAC46       --------->RAP2.6(2)                                                    <---------LBD16<-------       --------->ANAC46                                                    <---------At4g35610       --------->DEAR3(1)        ------>ZmHOX2a(1)               ------>ZmHOX2a(1)--------->DEAR3(1)      <---------LBD16       <---------ANAC58        <---------DAG2         --------->At4g35610      --------->RAP2.3(1)   <---------ANAC58        <----------DOF2--------->SPL7--------->RAP2.3(1)  ------>ZmHOX2a(1)  ------>ZmHOX2a(1)   <---------ARR11(3)      --------------------->WRI1<---------   tctccttcgccgcaatctccttcctcacttgcttcctcttcaatttcttcatcgcttttcgcttctccttacgactcatctccgccgctttctctttact  3388300                                  <-----------RAV1(1)                                     <---------DOF5.7(2)                                <---------ANAC58                                        --------->DOF5.7(2)                                <---------ANAC58                                       --------->TOE2(3)                           <----------DOF2                                             --------->TOE1(3)                         ------>NtERF2                                                <---------ANAC58                         <---------At4g35610                                          <---------ZAT6                        --------->DEAR3(1)                                            <---------ANAC46                        --------->RAP2.3(2)                                           <---------ANAC58                       --------->DEAR4(2)                     <---------ANAC58     <--------P                       --------->RAP2.3(1)                <---------MYB52(1)     --------->LBD16                      --------->LBD16                   <---------ANAC58        --------->LBD16                      ------>NtERF2                     <---------ANAC58       <---------LBD16                     --------->ANAC46               <---------DAG2          <-----------GT1 >ZAT14             <---------LBD16                 <----------DOF2      <---------AHL20(2)        <- ----GT1            --------->MYB46(3)             <------------------------ANAC81<---------MYB52(1)< -DOF2  <----------DOF2<------NtERF2          <<<<<<<<<TBF1   <---------ANAC58<---------LBD16      <-   ctcttcaaaactttccttctctcccgccgcttcttcgtgtcgctcttcttcttccttttcgtttgcttgctccatttttttcccggtagcgttaacctct  3388400          <---------ANAC46        <---------MYB46(3)        --------->MYB55(2)       <---------AtMYB61                              <-----------------AGL1       <---------DEAR3(1)                      --------->MYB52(2)       --------->ALFIN1                <---------ARR14(2) <---------REM1(2)     --------->AHL20(2)    <--------P ----------->HVH21     <---------AHL20(2)    <---------MYB52(1)                           ----------- --------ANAC58       <---------AHL20(2)    <-------GAMYB        --------->ZAT14     <---------AHL20(2) ----------DOF2       --------->AHL20(2)  --------->MYB59        <---------ZAT14    --------->YAB1 --------ANAC58    <---------GLK1(2)   --------->ARR14(2)  --------->MYB52(1) ----------->GT1   <----   ggcttcacggtggtggaaacagaatttaatttaggggtgcaaattcggttagtttgaaccgaaacggtatagtgaagaaatcgaaataaaaatggattaa  3388500                                                                      --------->HSFB2a(2)                                                                  <---------GLK1(1)                                                                  <---------ZAT2                                                                  --------->ZAT2                                                                  --------->At4g35610                                                                  --------->GLK1(1)                        <---------MYB46(3)                        <---------At4g35610                        <------MYB46(1)                        --------->LBD16                      <--------P                              --------->DEAR3(1)             --------->GLK1(1)                           <---------ANAC58             <---------GLK1(1)               <---------ATERF1(1)<------NtERF2          --------->LBD16                --------->TOE1(1)   <---------LBD16                        < >GT1   <---------LBD16 <------MYB83    <---------LBD16  <---------ANAC58    --------->YAB1         - -------GT1  <---------ATERF1(1) <------------CBF    <------------CBF <---------HSFB2a(2)    ------>ZmHOX2a(1)   accatactaaaccggagacccctagttggttcacctattgacctcggagactccaaattgctcgccggagctctcgaaatcagaaaactttcatcctctt  3388600                                  <---------RVE1(1)                                  <---------CCA1(1)                            <-----------HVH21    <----------DOF2              ------------>CBF   <---------ARR11(3)    <------------CBF           <---------WOX13(1)    --------->ARR11(3)  <---------YAB1                 <---------HSFB2a(2)          <------------CBF <----------DOF2    <-----------GT1         <---------ICU4--------->HSFB2a(2) ---------At4g35610     <---------ALFIN1   ----------->GT1           <---------ATHB12 -------->At4g35610  <-----------GT1  <---------AHL20(2)            <---------ARR11(3)             --   gtagctcaagccgattgacaatttctccactttcagatatttgatttgtaactttctcattgaaattcaaaatcattctccatcttctacaacgaggtct  3388700                        <---------ANAC58                        <---------ANAC58                     <---------WOX13(1)            <---------ANAC58                                                               <---------ALFIN1            <---------ANAC58                                                             --------->ANAC58 <----------DOF2    <------------CBF    <------------CBF                                 --------->ANAC58 -------->ID1<----------DOF2  <---------ICU4      --------------->AtSPL8  <---------MYB52(1)------->TEIL   cgtctttttgttttgctttgtagattgcttaatctttgtgcaaattgtatgcgttgtacttccttctcaagtttcagtttgtctcttgaagacgcacttc  3388800                                                                                  <---------HSFB2a(2)                                                                                  --------->HSFB2a(2)                                                                           <--------P                                                                          <---------ANAC58                                              --------->ANAC46            <---------ANAC58                                           <-------TEIL                  <---------MYB46(3)                                         <---------ARR14(2)        --------->ANAC58                                         <---------GLK1(2)         --------->ANAC58          --------                                     <---------At4g35610      --------->ANAC58<---------ANAC58      <             <---------ANAC46     ---------->DOF2             --------->ANAC58<---------ANAC46      <       <---------TOE1(2)     --------------->AGL15    <----------DOF2   <---------AtMYB61    --------   --------->HSFB2a(2) ------>ZmHOX2a(1) --------->ARR14(2)   --------->ANAC46<---------ANAC58      <   atcttctccaacgtttcttatactcctcaaaccagattaagcagattcacacagttcttttgaccagcaacgcattggttgcttcgagatggaagacgaa  3388900  Previous    Next  AGI:  At1g10320.1    Description:  U2 snRNP auxiliary factor-related. similar to ATU2AF35B, RNA binding [Arabidopsis thaliana] (TAIR:AT5G42820.1); similar to ATU2AF35A, RNA binding [Arabidopsis thaliana] (TAIR:AT1G27650.1); similar to ATU2AF35B, RNA binding [Arabidopsis thaliana] (TAIR:AT5G42820.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO46909.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain RNA recognition, region 1; (InterPro:IPR003954); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains Range:  from: 3384166    to: 3388375    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g10330.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN60147.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 3388749    to: 3390152    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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