Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                       --------->MYB46(3)   --------->GLK1(1)                   --------->MYB52(1) ----------->GT1                --------->ANAC58      --------->ANAC58                --------->ANAC58 <---------At4g35610                          <---------MYB59           <---------ANAC55(2)   --------->At4g35610                         --------->ANAC55(2)           --------->ANAC55(2)--------->ZAT2                          --------->REM1(1)           --------->ANAC46   <---------ZAT2                       <---------ANAC58          <---------LBD16     --------->At4g35610   <---------HSFB2a(2)      --------->YAB1          --------->MYB52(1)  <---------At4g35610   --------->HSFB2a(2)      --------->ANAC46   <---------HSFB2a(2)    <-----------HVH21        <---------LBD16 <---------ANAC58   --------->HSFB2a(2)------->GAMYB   --------->ANAC58    --------->YAB1    <-------TEIL   <---------LBD16   gacttgtggaactacgggactcaacagccttcagctgcagacgtaaatccatctccagaagcataaattgcttcaacatacataactcaaaactctggag  1753800                                                                      <-----------GT1                                                             <---------YAB1                                                       --------->AHL20(2)                ------->MYC3                    --------->TOE2(3)                  <---------AHL20(2)                <-------MYC3             >>>>>>>>>TBF1---------->DOF2 <----------DOF2  --------->YAB1  <----------DOF2   actgaagaacaagaagaagaaacatcaaaaaagaaacaatttttcttttgcacataaaaaattataagaaatatacacttttgtgcatacacatgtagtc  1753900                                                  --------->YAB1                                                 <---------ATHB12                                ----            ----------->GT1                     --------->ANAC58                                 <---       --------->AtMYB61                        --------->ANAC58                           --------->ZAT14   --------->ZAT18<---------AHL20(2)        --------->ANAC58                               <---------ZAT14   --------->DEAR3(1)                       --------->ANAC58  <---------GLK1(2)          ------------  --------->DEAR3(2)                        --------->ANAC46<---------YAB1            <---------ZAT14 --------->PCF2------->TEIL  ------->TEIL<-------TEIL--------->MYB46(3)               --------->ZAT14   tcgagcccaccaaaacgtatataatgtaatgtatatgtatacatacacacaatcaacaacttctgattctgaaatgaacaagtttttgtatactgtacaa  1754000                                                      --------->ARR14(2)                                                      <---------ARR14(2)                                                   <---------TOE2(3)                                                  <---------ICU4   ------->TEIL                             <----------DOF2 ----->ARR14(2)             --------->AHL20(2) --------->YAB1                      >>>>>>>>>GATA-1 ------ARR14(2)  <-----------GT1     <-----------GT1 <------ZmHOX2a(1)           ----------->GT1----- --->AtSPL8 <---------AHL20(2)--------->AHL20(2)  --------->YAB1         <-------TEIL      ----------   atacgaatttgaatttttttttcccctcaaaaaaatataaaaccagctttaataaggatttgaaaagtttccaagttcatatatagataaaccgaaagaa  1754100                                                                                                  <--                                                                                                  ---                                                                              <---------ARR11(3)  <--                                                                              --------->ARR11(3)  <--                                                                              --------->ARR14(2)  <--                                                                              <-----------ARR10  <---                                            <---------ICU4                    --------->GLK1(2) <----                                    <---------ANAC55(2)                       <---------ARR14(2)-----                                    --------->ANAC55(2)                      <---------ARR14(1)------                      <---------ARR14(2) --------->YAB1                ---------->DOF2         <-----                      --------->ARR14(2) <--------HAHB4         <-------TEIL <---------GLK1(2) <-----            --------->YAB1     ----------->HVH21              --------->ARR11(1)          --------->MYB52(1)   =========================HOX2a_HOX2a <---------YAB1        --------->ARR14(2)     --------->ANAC58   <------ZmHOX2a(2) <------ZmHOX2a(1)--------->YAB1          <---------ARR14(2)     --------->ANAC58 ---->GLK1(2) --------->ICU4 <---------At4g35610              <---------GLK1(2)      --------->ANAC46 >DOF2     <---------YAB1    --------->At4g35610 <----------ID1--------->ARR14(1)    --------->AtLEC2   tttggatcaaactataatttttaggaactggaactgacacttatcattaagacaacaagagacagattcgattaaaagagaatcttcaggcaaaacggcg  1754200                                                              ---------->DOF2                                                     <---------HSFB2a(2)                                                     --------->HSFB2a(2)   <---------ANAC58                                 ------>ZmHOX2a(2)   <---------ANAC46                                --------->CCA1(2)   <---------ANAC58                                <------ZmHOX2a(2)                                < -------ANAC58                                    <---------ARR11(3)                                - ------>O2                                        <---------ARR14(2)                                < -------O2                                        --------->ARR11(3)                                < -------ANAC58                                    <---------ARR14(3)                               -- -------ANAC46                                    --------->ARR14(3)                               <- ---NtERF2                                        --------->ARR14(2)                               <- -------HVH21                                     <---------AGP1                                   <- ->NtERF2                     <---------AHL20(2)  --------->AGP1           <---------ARR11(3)      -- --->DEAR3(1)               <---------YAB1 *TSS  <---------CCA1(2)         --------->ARR11(3)      <- ----ANAC46            ----------->GT1 <---------HSFB2a(2) >>>>>>>>>TBF1>>>>>>>>>TBF1             <-- ----DEAR3(1)--------->ANAC46--------->AHL20(2) ----------->ARR10    >>>>>>>>>TBF1    ----------->GT1   tcgtgtcttgtttacacataaacagaggttattaaaaagtttgggaagagcagatctggaagaagaaagaagaagaagaactctctactggttaatttta  1754300              --------->GLK1(1)              <---------RVE1(1)           ----------->GT1        --------->MYB52(1)       <---------WRKY12       <---------WRKY38(1)    <------NtERF2   ------>NtERF2   --------->LBD16   <---------MYB46(3)  <---------ANAC46 <---------LBD16 <------NtERF2<---------CCA1(1) <---------MYB52(1) --------->ATERF1(1) ---------ATERF1(1) ----->NtERF2--------->ARR14(2) ---------DEAR4(2) ---------RAP2.3(1) ------->DEAR3(1) --------DEAR3(1)                                                                               ----- --------ATERF1(2)                                 ------>MYB46(1)                   --------->TOE2(3) --------RAP2.3(3)                <-----------ARR10------>MYB83               --------->ETT(2)  ----- ------->ATERF1(2)               <---------At4g35610                 --------->TOE1(3)        <------ --------RAP2.3(2)       <------ZmHOX2a(1)       --------->AtMYB61   --------->TOE2(3)------>ZmHOX2a(1) -------LBD16<---------ARR14(2)  --------->At4g35610     <----------DOF2     <---------HSFB2a(2)-----   gccggcgggtaaacggatatttttggaggaagagcagctcttctctcaaaaccatccctctttctctaaaaccctaattctcgacatccttcaaaaccta  1754400                                                                                                    -                                                                                                   <-                                                                                             --------                                                                       ---------->DOF2       --------                          <----------DOF2                     <---------ANAC46             --------->GLK1(1)                      --------->MYB46(3)                    <---------ANAC58              <---------ARR11(3)                      <---------MYB111(2)                   <---------ANAC46            ----------->ARR10                    ------>MYB83                            <---------ANAC58        <------ZmHOX2a(1) ->MYB46(1)         ------>MYB46(1)              --------->ATHB12    <---------------AGL15--------->ARR14(2) ->MYB83         --------->ANAC46                <---------ICU4      --------------->AGL15<---------ARR14(2) ---MYB59  --------->WOX13(1)             <----------DOF2 <-----------HVH21   >>>>>>>>>TBF1--------->CCA1(2) ---->MYB52(1) <-----------GT1 <-----------GT1 <---------WOX13(1)   ----------------->AGL3--------->ARR11(3)   acaatttcaatttcaattaacccaacaactttcttactctcttcctttgaatgatttcaatgtcgtgtgtcccaaaagaagaagaaggagaagataccca  1754500                         --------->At4g35610 --------->ANAC55(2)                         <---------ZAT2      <---------ANAC55(2)                         --------->ZAT2      --------->ANAC58                     --------->ANAC46     <---------MYB52(1)        ------>MYB83 --------->ANAC58    <-------GAMYB                      ------>ZmHOX2a(1)        ------>MYB46(1)  <---------At4g35610 --------->ANAC58           <---------ARR14(2)      <---------MYB59--------->ANAC58   --------->MYB52(2)              --------->ARR14(2) -------->YAB1     <---------ALFIN1     <---------MYB46(3)     --------->ARR14(2)             <------ --------ATHB12--------->MYB46(3)     <---------MYB52(1)       <---------ARR14(2)       <---------YAB1 ->ANAC58      --------->ANAC46     ------>ZmHOX2a(1)         --------->DOF5.7(2) ------>ZmHOX2a(1)<- ->ANAC58--------->GLK1(1)      ----------------------->TaNAC69(2)     <---------MYB52(1)--------->ATHB12   aatcaaaaccgaactccacgaccacgctgctgataatcctgttcgttacgcctctcttgagagcgtttactccgtttcctcttcctcgtcttcattgtgt  1754600            <---------MYB46(3)                                                     --------->MYB52(1)          <---------MYB52(1)             <---------At4g35610                      ------>NtERF2         ------>NtERF2                   --------->ZAT2                           <---------SPL7         <---------At4g35610            --------->ANAC58                         ----------->HVH21         --------->At4g35610            --------->ANAC58                         --------->DEAR3(1)        --------->DEAR3(1)       <---------ZAT18                                 --------->ETT(2) <--       --------->RAP2.3(1)   <---------WRKY38(1)                              <---------DEAR3(1)  ---     --------->DEAR3(1)     --------->WRKY18(1)                            ========================== -----RAV1(1)     --------->ANAC46    ---------->DOF2                      ---------->CDC5        --- --------AtLEC2--------->PCF2<---------WRKY12    <---------ATHB12      ------>NtERF2  --------->LBD16   tgcaagaccgccgctggttcccacaagaaggtcaatgccctcaagctcccaatgagcgatagttttgagttgcagcctcatcggcgaccggagattgttc  1754700  Previous    Next  AGI:  At1g05820.1    Description:  peptidase. similar to protease-associated (PA) domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G43070.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45292.1); contains InterPro domain Protease-associated PA (InterPro:IPR003137); contains InterPro domain Peptidase A22, presenilin signal peptide; (InterPro:IPR006639); contains InterPro domain Peptidase A22B, signal peptide peptidase; (InterPro:IPR007369) Range:  from: 1749681    to: 1753766    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g05830.1    Description:  trithorax protein, putative / PHD finger family protein / SET domain-containing protein. Identical to Histone-lysine N-methyltransferase ATX2 (ATX2) [Arabidopsis Thaliana] (GB:Q9MA43;GB:Q8RXL4); similar to ATX1 (ARABIDOPSIS HOMOLOGUE OF TRITHORAX), histone-lysine N-methyltransferase/ phosphatidylinositol-5-phosphate binding [Arabidopsis thaliana] (TAIR:AT2G31650.1); similar to hypothetical protein OsJ_027330 [Oryza sativa (japonica cultivar-group)] (GB:EAZ43847.1); similar to hypothetical protein OsI_029454 [Oryza sativa (indica cultivar-group)] (GB:EAZ08222.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67769.1); contains In Range:  from: 1754243    to: 1761816    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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