Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                       <---------ANAC46                     <---------ANAC55(2)         ------>ZmHOX2a(2)                     --------->ANAC55(2)        --------->GLK1(1)                    <---------LBD16             <---------GLK1(1)         --------->TOE2(3)                   --------->MYB52(1)          ------->TEIL               --------->TOE1(3)       <----------DOF2                         --------->ARR11(3)         --------->TOE2(2)  <------ZmHOX2a(2)      ------>ZmHOX2a(2)                        <---------ARR11(3)         --------->TOE1(2) ---------    --------->ARR11(3)--------->LBD16          <---------AGP1          <---------DOF5.7(2)  <--------    <---------ARR11(3)----------->GT1  <------ZmHOX2a(2)         ---------->DOF2      --------->ETT(1)   cagtatgatctttcaaacacattacggaaaaaccagaccggatcaaatggatctctcgagattagaagaaagttaaccttcgattttgtcggaagatcga  1421400                                                <---------TOE2(2)                                                <---------TOE1(2)                                            <-------TEIL                                          <---------SPL7        =====================================bZIP_DOF        ---------->DOF2                  <---------MYB46(3)                                    ------      ---------->DOF2                --------->ALFIN1             --------->ARR11(3)           <-----      =======================================bZIP_DOF            --------->YAB1     ----------->RAV1(1)    --------->ANAC58               <---------bZIP60(2)      <---------------------WRI1        -------    --------->ANAC58               ================================bZIP_DOF        --------->MYB46(3)   ------>NtERF2                   <---------O2<---------AtLEC2 <---------YAB1  --------->MYB46(3) >ARR11(3)                         <---------TGA1a      ---------->DOF2   --------->YAB1    --------- -ARR11(3)                      ----------->HVH21      <------ZmHOX2a(1) <---------YAB1------->GAMYB   atcgacaccaaagagctctgtacatgctgagtgtctgacatgggggttcgcatgtaaggaaagacgatgatcacgatgatcaacaacaacagaagaaagg  1421500                               ---------->DOF2                        <---------ARR11(3)                                        <------ZmHOX2a(1)                        --------->ARR11(3)                                    <---------ANAC46                       --------->YAB1    <---------ARR11(3)                ----------->HVH21 ----->GT1            <---------YAB1     <---------GLK1(2)            --------->ANAC58 -----ID1          --------->ICU4--------->ANAC58                     --------->ANAC58         <----- ---->GT1      <-----------HVH21 --------->ANAC58     ------>ZmHOX2a(1)    ----------->TGA1   <------ ->DOF2   ---------->DOF2<---------YAB1  --------->ARR11(3)    <---------LBD16<---------bZIP60(2)   aaaaatcacagagaaagtgtcacgatgatcatcgaaagaaacagatttttgttatcctctatttttctgggtaagaaatgacgaggaagaacagaggtag  1421600                                                                  <---------AHL20(2)                                                            <------ZmHOX2a(2)                                                           --------->AGP1                                                           <---------ARR14(2)                                                   <---------TOE1(2)  --------->CCA1(2)                            <---------TOE2(3) --------->AHL20(2)               <-- --TEIL                       <---------YAB1   <---------YAB1<-------TEIL                    <------- --P                     <----------DOF2     --------->YAB1--------->ARR14(2)             -----------   atagatagaagaaaaaattcaatttttcttttatcacagacagagaattatcgttggaacagatccatttaatgctaaataatacagaaatgtagtaaat  1421700                                                                <------ZmHOX2a(2)                                                               --------->ARR14(2)                                                               <---------ARR14(2)                                                               <-----------ARR10                                                               <---------ARR11(1)                                                   <------ZmHOX2a(1)                                                   ====================HOX2a_HOX2a                                                   =====================HOX2a_HOX2a                                                  ----------->GT1    --------------------->WRI1                 --------->LBD16 --------->ARR11(3)    <---------ANAC46                    <---------RVE1(1)      <---------ARR11(3)    <---------ANAC58                    <---------CCA1(1)     <---------ARR14(1)        *TSS<--------    <---------ANAC58                   <---------ARR11(3)     <---------CCA1(2)       <---------DAG2 ---------GT1                          --------->ARR11(3)  <---------LBD16            <----------DOF2 --AHL20(2)                   --------->ANAC58--------->HSFB2a(2) <----------DOF2<-----------GT1 >GT1                         --------->ANAC58<---------HSFB2a(2)------>ZmHOX2a(2) ---------->ID1 ---   tttcttccttgttttttttgttttacacagacactcactgagatatttccagaggaaaaatttcggatctttgttttttgtttttgcccttttttttctc  1421800                                                                                                -----                                   <---------At5g28300                                         ------                                  --------->MYB52(1)                                <---------AHL20(2)                             --------->AHL20(1)                                     --------->AHL20(1)                             --------->AHL20(2)                                     <---------AHL20(1)                             <---------AHL20(2)                                     --------->AHL20(2)                            --------->AHL20(2)        <---------AHL20(2)       <---------ARR11(3) ---GT1               ----------->GT1------->GAMYB   --------->YAB1 ------>ZmHOX2a(1)       <-------- --->ZmHOX2a(1) ---------->DOF2   <-----------GT1   --------->AHL20(2)         --------->ARR11(3)----   ctccgatgtctctgtgtgaaaaggaagaaaattaattaaccgtgtttttaaaaaataaaaatgaatactcctcgtgtacaagataataaatttgatgtac  1421900                                                                                 --------->At4g35610                                                  <---------DEAR3(2)             <---------ZAT2                       <------MYB46(1)            <---------MYB46(3)    --------->ARR11(3) --------->At4g35610   <------MYB83           ----------->HVH21         <---------ARR11(3) <---------At4g35610<---------ANAC58--------->ARR11(3)             --------->STY1(2)      <----------DOF2 ------>RAV1(2)     <---------ANAC58<---------ARR11(3)             <---------STY1(2)  ---------->ID1 ->TEIL            --------->ZAT2  <---------CCA1(2)              ------>MYB83   <---------At4g35610 -REM1(1)   <-----------GT1        --------->GLK1(1)          ------->TEIL       --------->ZAT2 ----->TOE1(2)     <---------ZAT2  <---------GLK1(1) <-------TEIL ------>MYB46(1)<------NtERF2   ctgagatgacaatattacccctgcttggtctggtctgatatcttcaatgtgacggttcattgtgaacctagctagaccttggcagcttggctctttttca  1422000                                                                                                   --                                                                                                   <-                                                                                                  ---                                                                                              -------                                                                       --------->AHL20(1)     -------                 --------->HSFB2a(2)           <---------ZAT14        --------->AHL20(2)      <------                 <---------HSFB2a(2)    ------>MYB46(1)          --------->YAB1            --------->YAB1       --------->MYB52(1)               ------>MYB83            ----------->GT1          --------->AHL20(2)      ------->GAMYB                   <---------MYB59    <---------ANAC46              --------->AHL20(2)     --------->MYB46(3)  --------->YAB1--------->MYB55(1)<---------ANAC58       <-----------GT1   ---   <-----------GT1--------->LBD16  <-----------GT1       <---------ANAC58 <---------YAB1--------->YAB1   agttttaaccatcggttttccagagaataatactgaattacctactgactatacaattttcttgtaatgaaaatatatgattttactaaataaaaataaa  1422100                                                                                                   --                                                                                                   --                                                                                                   --                                                                                                   --                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                                                                -----                                                                                                -----                                                                                               ------                                                                                               <-----                                                                                               <-----         --------->CCA1(2)                                    <---------ARR11(3)              <------        --------->ARR14(2)                                    --------->ARR11(3)            <------MYB46(1)        <---------ARR14(2)                                   <---------GLK1(1)              <------MYB83 ------->ARR11(3)                                         --------->ANAC58                <---------ANAC46 --------ARR11(3)                                         --------->ANAC58                <--------P ------>CCA1(1)      ----------->GT1                      --------->ANAC46              <---------MYB46(3) -->AHL20(1)        ----------->GT1                <---------HSFB2a(2)                  --------->MYB55(2) -->AHL20(2)  --------->At5g28300                  --------->HSFB2a(2)                 --------->ALFIN1 ---AHL20(2)----------->GT1                      ----------->RAV1(2)<---------YAB1  --------->DAG2<-- ------>RVE1(1)  ---------->DOF2             --------->ICU4  --------->GLK1(1)     ---------->DOF2---   atatcatccagataggggtaaaagggtaaaatagtcagaacaatgtaattcttctggcacaagaaatcttatgcttcgcagtttgtaaagtggttgggac  1422200                                                                                                  <--                                                                                            <--------                                                                                            ---------                                                                                            <--------                                                                                            ---------                                                                                       --------->ANAC46                                                                                       <---------bZIP60(1)                                                                                       --------->ANAC58   <---------MYB52(1)                                                                  <---------ANAC55(2) ------>P                                                                         <---------ICU4  <-- ------->MYB52(1)                                                             --------->TGA2(2)  <--- ---->MYB83                      --------->ARR14(2)                          <-----------TGA1 ------- ---->MYB46(1)                   <---------GLK1(2)                          <---------TGA1a --------- ------ABI4(2)                 <---------YAB1                               <---------O2    --------- ------MYB55(2)             --------->ARR14(2)                              --------->ANAC46--------- ----->MYB46(3)             <---------ARR14(2)                              --------->TGA1a------>NtERF2 ---->TCP15(2)            <---------MYB46(3)          <---------ANAC46=============================== ---->DEAR3(2)      --------->GLK1(2)             --------->At4g35610 ================bZIP_DOF<------ --->PCF2  <---------------AtSPL8<---------ARR14(2)  --------->At4g35610    --------->O2  <---------ALFIN1 ----TCP20--------->DAG2 <---------TOE1(2)        <---------ZAT2      <----------DOF2  --------->ANAC55(2) ----TCP15(1)<----------ID1----------------------->TaNAC69(2)      --------->ARR11(3)  --------->ANAC58 ---PCF2 ---------->DOF2 <---------TOE2(2)        <---------At4g35610------>ZmHOX2a(2) --------->bZIP60(1) -------ALFIN1      --------->ARR14(2)            --------->ZAT2   <---------ARR11(3)<-----------GT1 ------>MYB55(1)   <---------GLK1(2)     <-----------HVH21   --------->At4g35610 --------->ICU4  ----   ccaccggtagaaaaagggacagaatcggaggttacgattcgctggtcactggagcagcgtaagagctgtgatctttagacgtcagtattacgccacgtta  1422300  Previous    Next  AGI:  At1g04990.1    Description:  zinc finger (CCCH-type) family protein. Identical to Zinc finger CCCH domain-containing protein ZFN-like 4 [Arabidopsis Thaliana] (GB:Q94AD9;GB:Q9MAU8); similar to ZFN2 (ZINC FINGER PROTEIN 2), nucleic acid binding [Arabidopsis thaliana] (TAIR:AT2G32930.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN76191.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) Range:  from: 1419079    to: 1421788    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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