Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                   <-----------GT1                                               <-------GAMYB                                              <---------MYB46(3)                                            <---------ANAC58                                            <-------GAMYB                                            <---------ANAC46               <-------TEIL                 <---------ANAC58              <------ZmHOX2a(2)            <------MYB83             <---------ARR11(3)            <------MYB46(1)                <---------HSFB2a(2)             --------->ARR11(3)            --------->MYB52(2)            ----------------->AG             --------->AGP1                <---------MYB46(3)       <---------ICU4    --------->LBD16                        --------->MYB55(2)      <---------YAB1   <---------LBD16                        <---------AtMYB61      --------->YAB1        --------->At4g35610  <---------LBD16  --------->YAB1        <---------MYB52(1)      <---------ICU4 <---------GLK1(2) ---TOE1(3) <---------GLK1(1)          <-----------RAV1(1)    --------->YAB1---------->DOF2 ---TOE2(3) --------->GLK1(1)      --------->ZAT18         <----------DOF2--------->HSFB2a(2) <------   ttttccctggagagagatccatgatcagagattggaggtcactgttggttgttaccagacgctttcatcatcatttccaaaagagtctcagccaaattca  1017700                                 --------->ICU4   <---------ZAT18                            --------->YAB1        --------->PCF2            <---------ZAT6                   <---------AtMYB61 --------->AHL20(2)           --------->REM1(1) -TEIL<-----------GT1      <---------YAB1     --------->ALFIN1    --------->ANAC46   <-----------GT1   tgaaatttttgcaattttgttttggtttcattataaagattatatcaagttgggccctctctccctctacatcatctagtgtccatataaccagttggat  1017800                                                                  <---------AHL20(2)                                                                 <---------AHL20(1)                                                                 <---------ARR11(3)                                                                 --------->AHL20(1)                                                                 --------->AHL20(2)                                                            --------->ANAC58    --------->GLK1(1)                                                 <---------ZAT14 <---------AHL20(2)                 --------->YAB1         <----------DOF2     --------->ANAC58    <---------GLK1(1)              ------->TEIL    ----------->GT1   <----------DOF2  --------->ARR11(3)      ----------->GT1          --------------->AtSPL8   <-----------GT1    <-----------HVH21    ---------->DOF2         <-   tgtccaactcagaatgtactcataaatctgaattgttaaactcttttagtctttactgtcacacgaatatattttcagaaagaaatctgaattgtaaatc  1017900                 <----------DOF2              <---------ARR11(3)             <---------GLK1(1)                            <---------ARR11(3)       ----------->GT1             <---------CCA1(2)                       --------->YAB1      <---------AHL20(2)             --------->GLK1(1)              <---------GLK1(1)      --------->TOE2(3)           ------      --------->ZAT18                       --------->GLK1(1)    <-----------GT1 ---------->DOF2  ---  --------->MYB52(2)  --------->YAB1   ---------->DOF2    --------->ARR11(3)---------->DOF2 <-------- ---------DOF2--------->ARR11(3) ---------->DOF2     ----------->GT1     --------->AHL20(2) ---------   tctttagttgcactgatatctttttcataaaaaaaaaaagagaaagaaatctgaatagtaaatcttttttcttaattaaaaagaaaagaaaaaacatctc  1018000                                                                                            <--------                               <<<<<<<<CAMTA3                                         ----------->GT1                             --------->ANAC58                                         <---------MYB46(3)                             --------->ANAC58         <---------AHL20(2)            <-------MYC2                             --------->ANAC55(2)      --------->AHL20(2)            <-------MYC3                             <---------ANAC55(2)   ----------->GT1                  ------->MYC2                          ----------->HVH21    --------->ATHB12                     <-------PIF5     <---------ZAT14     <-----------HVH21<---------ANAC58                          ------->MYC3 --------->AGL15        --------->ANAC58  <---------ANAC58                          ------->PIF5 --->ZmHOX2a(1)         --------->ANAC46 --------->ZAT18        ----------->GT1    <---------ANAC58 -ARR11(3)              --------->ANAC58 <---------ZAT18  --------->AHL20(2)       <---------ANAC58 >ARR11(3)           <-------TEIL       --------->ALFIN1  <---------AHL20(2)       <---------ANAC46*TSS   cttatagtatagttgatagaaggtgcaagtcacgcgtttaatgtgcgcgtgattagttaattaaacttgtatatagagagtaagcgcgtggttacattgc  1018100                         ------>ZmHOX2a(2)                        --------->GLK1(1)                        <------ZmHOX2a(2)                        <---------GLK1(1)                       <---------AGP1                            <---------MYB52(1)                       --------->ARR11(3)                      <---------YAB1              --------->TOE1(3)                             <---------ARR14(2)       <---------ZAT6  <---------ARR11(3)          <---------ARR14(2) --------->ZAT6    ---------->DOF2 ------>ZmHOX2a(2)        --------->ARR14(2)<----------DOF2    >>>> ----CBF     --------->ZAT6       <---------GLK1(1)--------->ARR14(2)   <----------DOF2        ------   aaaacactagagataaccctagaaagatctctctcgatctctggttcgaagaaaatccaccatttccgattgttctttctctttgacaaaacccagatag  1018200                                    <---------RAP2.6(2)                              --------->ARR14(2)                              <---------ARR14(2)                            --------->LBD16                           --------->HSFB2a(2)                           <---------HSFB2a(2)                          <---------LBD16                       <---------At4g35610                                                     ------                       <---------ZAT2                                                          <-----                       --------->ZAT2 <------NtERF2                                         <--------                       --------->At4g35610                                               <<<<<<<<<TBF1                       <---------GLK1(1) ------>ZmHOX2a(1)                           --------->ICU4--     <-------TEIL    --------->ZAT14<---------ANAC58                              <---------MYB52(1) >>>>>GATA-1         <---------ZAT18<---------ANAC46                             --------->LBD16 <--- ----->GT1----------------->AGL1    <---------ANAC58                             --------->At5g28300   ataaaaattcgttccaattccagtgagctccggaaatggcgtccttcaagttgatgtcttcttccaattccgacttgtctcgccgtaattcttcttctgc  1018300                                                --------->ANAC58                                                --------->ANAC58                                              <---------ALFIN1                                             ------>ZmHOX2a(1)                                         <---------ARR14(2)                               <---------WRKY12                                         --------->ARR14(2)                           <------ZmHOX2a(1)                                        ------>MYB83                               --------->ATERF1(1)                                   ------>NtERF2--------->ANAC46     <---------ARR14(2)   <---------WRKY38(1)                   =================================HOX2a_HOX2a --------->GLK1(2)  <------NtERF2 <---------At4g35610        <---------ALFIN1 ================HOX2a_HOX2a         <---------ANAC46 --->At4g35610     <------ZmHOX2a(2)    ------>MYB46(1)      --------->LBD16     <---------DEAR3(1) ----At4g35610    <---------ARR11(3)  <---------MYB59 <---------ATHB12          <---------LBD16 -At4g35610 <---------HSFB2a(2)   <---------ETT(1) --------->DEAR3(1)--------->ARR14(2)   <---------WRKY45 ------->REM1(1)  --------->ARR11(3)  --------->AtMYB61  --------->ANAC46    --------->SPL7<---------DOF5.7(2) -------DOF2--------->HSFB2a(2)   --------->DEAR3(1)  <------ZmHOX2a(2)     --------->MYB52(1)   ttcatcttccccttctataagatcatcgcaccatctccgaccaaatcctcacgccgatcactccagaatcagtttcgcttacggcggaggagtcaacgat  1018400                                                               ------>ZmHOX2a(2)                                                              <------ZmHOX2a(2)                                                             <---------ARR14(2)                                                             --------->ARR14(2)                                                            <---------GLK1(1)                                                      --------->MYB52(1)           ---------->DOF2                                                      --------->GLK1(2)          ------->GAMYB                                        <---------TOE2(3)   --------->GLK1(1) --------->MYB52(1)                                     <---------WOX13(1) <---------ANAC46     --------->MYB46(3)    --     <---------ANAC58      <---------HSFB2a(2)        <---------ARR14(2)   <---------DOF5.7(2)    <--     <---------ANAC58      --------->HSFB2a(2)  ------>ZmHOX2a(2)        --------->DOF5.7(2)  <------  <----------DOF2---------->DOF2    <-------GAMYB     --------->ARR14(2)--------->TOE2(3)--------->ALFIN1   tacactttcgcgtctgattcaaagcccttcgagatggcgattgatgttgatcggagtatcggagatcggaacagcgttaacaacggaaagagtgttgacg  1018500                                                                                <------ZmHOX2a(1)                                                                              <---------TOE2(3)                                          <---------REM1(1)               ===========================                                          <---------YAB1                  --------->O2                                        <---------ICU4                    <---------TGA1a                                       --------->ICU4                     --------->TGA1a                  <---------LBD16      <---------YAB1              --------->YAB1                <---------ARR14(2)   <---------ICU4               <---------AHL20(2)           ------     ---------->DOF2                 --------->YAB1>>>>>>>>>TBF1--------->CCA1(2) --------->GLK1(1) ------->ATHB12 --------->ARR14(2)  <------ZmHOX2a(2)          <---------ARR11(3) <---------GLK1(1)-- -------YAB1    ------->TEIL---------->DOF2  <---------TOE2(3) --------->ARR11(3)<---------ARR14(2)<- ---TOE2(3)    <---------CCA1(2)   --------->ARR11(3) <---------ARR14(2)  <---------O2      ---------   atgtttggaaagagattgtatctggagagcaaaagacgatcatgatgaaggaagaagaaccagaagatataatgacacttgaggatttcttagcgaaagc  1018600  Previous    Next  AGI:  At1g03960.1    Description:  calcium-binding EF hand family protein. similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT5G28900.1); similar to calcium-binding EF hand family protein, putative / protein phosphatase 2A 62 kDa B'' regulatory subunit, putative [Arabidopsis thaliana] (TAIR:AT5G44090.1); similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT5G28850.2); similar to putative protein phosphatase 2A regulatory subunit [Oryza sativa (japonica cultivar-group)] (GB:AAK13162.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40604.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65086.1) Range:  from: 1013714    to: 1017928    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g03970.1    Description:  GBF4 (G-box binding factor 4); transcription factor. Identical to G-box-binding factor 4 (GBF4) [Arabidopsis Thaliana] (GB:P42777); similar to bZIP transcription factor family protein [Arabidopsis thaliana] (TAIR:AT5G44080.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43627.1); contains InterPro domain bZIP transcription factor, bZIP-1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) Range:  from: 1018099    to: 1019246    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g03980.1    Description:  ATPCS2 (PHYTOCHELATIN SYNTHASE 2); glutathione gamma-glutamylcysteinyltransferase. Identical to Glutathione gamma-glutamylcysteinyltransferase 2 (PCS2) [Arabidopsis Thaliana] (GB:Q9ZWB7); similar to CAD1 (CADMIUM SENSITIVE 1) [Arabidopsis thaliana] (TAIR:AT5G44070.1); similar to phytochelatin synthase [Thlaspi japonicum] (GB:BAB93119.1); similar to phytochelatin synthase 1 [Brassica juncea] (GB:BAB85602.1); similar to phytochelatin synthase [Thlaspi caerulescens] (GB:BAB93120.1); contains InterPro domain Phytochelatin synthase (InterPro:IPR007719); contains InterPro domain Phytochelatin synthase, C-terminal (InterPro:IPR015407) Range:  from: 1018569    to: 1022107    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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