Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                               <---------YAB1                         --------->ANAC55(2)                         <---------ANAC55(2)                     <-------GAMYB                    --------->MYB55(2)                    <------MYB83                    <------MYB46(1)                                   <------------MYB.PH3(2)     ---                    ----------->GT1                        <---------MYB59                       ----                   --------->ALFIN1                       <---------ANAC58                       <---                   <---------AtMYB61                      ----------------->AGL1                <----      --------->YAB1<---------MYB46(3)                <---------ANAC58<---------MYB52(2)        ----- -------->YAB1   <---------ANAC58                     <---------ANAC58--------->MYB46(3)        <---- ---->At5g28300  <---------ANAC46               ---------->DOF2  ----------->GT1       <-------TEIL ----->GT1       <---------ANAC58       ---------->DOF2   <---------ANAC58     <----------ID1  ------   taacataatcatatatatggggtggttacttatttttggtatcaaagtcacaaagtacttgcctacttggtaacaaactagaagacaaattcatacatta  954100      ----------->GT1  <---------AHL20(2) <---------AHL20(2) <---------AHL20(1) --------->AHL20(2)            ------>ZmHOX2a(1) ------>YAB1                  --------->TOE2(3) ----->ICU4                   --------->TOE1(3) ------YAB1  --------->DAG2 <---------YAB1 -----AHL20(2)     <-------GAMYB                                                  ------->TEIL ---->AHL20(2)    --------->MYB52(2) <----------DOF2                     ----------->GT1   --------->DAG2 -----AHL20(1) ------------>MYB.PH3(2)        <---------YAB1           ---------->DOF2<---------YAB1 --->YAB1   ---------->DOF2<-----------GT1  --------->YAB1  <----------ID1 --------->AHL20(2)   taattaatttgttataaagttagttgttttatccttatactttcaagtataattctaacaaaaaaacaaattagaaagtaaatggatgttgataagggag  954200                                           <------MYB46(1)                                           <------MYB83                                          --------->MYB59                ------>ZmHOX2a(1)                                        <---------MYB52(1)             ----------->RAV1(2)                                       <-----------HVH21             --------->ARR14(2)                                     <-------MYC3                    <---------ARR14(2)                                     ------->MYC3                   <---------ZAT2                                   <-------MYC3                     <---------At4g35610                                   ------->MYC3                     --------->At4g35610                                   <-------MYC4                     --------->ZAT2               <---------At4g35610 ------->MYC2              ---------->DOF2   <----------DOF2         <------ZmHOX2a(1)         <-------MYC2   --------->ANAC58  <------NtERF2   <---------AtLEC2 ---------->DOF2                 <-------TEIL     --------->ANAC58 <---------ATERF1(1)   <-----------GT1   agagaaagagaggatgatgctgatgaaaacataggcacatgtgttaggtctgaagcaaggagagaaaggcagctcctgcttcttttgcatgaaacctctc  954300                         --------->HSFB2a(1)                        ------->TEIL                      --------->AtMYB61                     <---------MYB52(2)                     --------->ANAC46                       <---------DAG2                     --------->ANAC58          --------->ANAC58                     --------->ANAC58          --------->ANAC58                    ------>NtERF2              --------->ANAC46  <-----------GT1                --------->ANAC46             --------->ANAC46   <---------AHL20(2)                --------->ANAC58         <-----------HVH21  <----------DOF2        <-----------GT1                --------->ANAC58        --------->ANAC46 <---------ALFIN1      <---------YAB1     ---           <---------CCA1(2)        <---------ALFIN1  ------>ZmHOX2a(1)   ---------->ID1     --------   taaaactcttctcttatctcgccacgaaccctctccccatacccttcacacgactccttccactttttaatctcttgtcttcttattacatctcatcaaa  954400            --------->YAB1                                                                -----------           <---------YAB1                                                       <<<<<<<<<GATA-1         --------->YAB1                                                         <<<<<<<<<GATA-3         -------->HAHB4                   <-------TEIL                          <<<<<<<<<GATA-4        <---------YAB1                   <-----------GT1                        <<<<<<<<<GATA-2   ---     <---------AHL20(2)            --------->AHL20(2)                       ------------>CBF     ----    --------->AHL20(2)     ------------>CBF                                --------->ANAC46   ------- ------>GLK1(2)     ---------->DOF2<---------AHL20(2)               <---------ARR11(3)  --------->AHL20(2) ->YAB1<---------TOE2(3)  --------->MYB52(1)     <-----------GT1   <---------CCA1(2)    ----------->TBP   attctatttaatgataataatccaaagctaacaatatttaaatatacgttttaacttattctcatgtctatatctatactcaatccacatatatataaac  954500                                                                                   <---------ICU4   -                                                                                  <---------YAB1    -                                                                                  --------->ICU4    -                                                                                --------->YAB1     <-                                                                            <---------AHL20(2)     <-   <---------ARR11(3)    --------->GLK1(1)                              <---------CCA1(1)        <--- >TBP                   *TSS                                           <---------ARR11(3)   <-------- --------->CBF  <---------At4g35610          --------->bZIP60(2)       --------->ARR11(3)   <-------- ----->TOE2(3)  --------->At4g35610          --------->ANAC46        ----------->ARR10      <-------- -->ANAC46 <----------DOF2            --------->AtMYB61              --------->MYB59    ------->TEIL-   cacaatatcccatctttcatcttacacaaatccctcaaaaccaaaacacatcacaaacaaaaaaaacaagttagatattatatcatcatggatgtcgttt  954600 -------->ANAC55(2)                           --------->HSFC1(2) -------->ANAC58                              <---------HSFC1(2)                                    < -------->ANAC46                 --------->GLK1(2)                                                  - --------LBD16             --------->ALFIN1---------->DOF2                                          - --------------------WRI1------->GAMYB  --------->LBD16                                            -- ------SPL7           --------->MYB52(1)--------->HSFB2a(2)                                     ----- -ANAC58          --------->ANAC58      <---------HSFB2a(2)                                     ----- -ANAC46          --------->ANAC58   ------>ZmHOX2a(1)                             <<<<<<<<<TBF1----- -ANAC58      <---------TOE2(3)  <---------ARR14(2)   <---------CCA1(2)       <---------GLK1(2) <---- -------->ANAC58<------ZmHOX2a(1)--------->ARR14(2)<----------DOF2          <---------YAB1<---------ALFIN1   gtacggaacatcaaatgaggaagccaacggtggagattcctccgagaaagcttcttttatcttccaagagttttccttctgattcttcttcccctcgctc  954700          --------->MYB52(1)       --------->YAB1 <---------ANAC46                                                                            -------- ------NtERF2                                                                                <------- -------->LBD16                      --------->At4g35610                                  <---------MYB52(1) ----->NtERF2            ----------->RAV1(1)                                      <---------------AtSPL8 ------->DEAR3(1)       <----------ID1                                            <---------------AtSPL3 ---->ANAC58          --------->ANAC58                                ------->GAMYB --------->ZAT14 ---->ANAC46          --------->ANAC58                             ----------->RAV1(1)  <---------ZAT6 ---->ANAC58          --------->ANAC46                 --------->MYB52(1)      ---------->DOF2 -----DEAR3(1)      ---------->DOF2  <---------At4g35610          --------->MYB46(3)<---------ZAT14   gccgcgtaaacataactggaacaaaagcaacaagattacatctgaacatgaagaagacaacgaagacaacaacagagagaataaagagtactgttatgat  954800                 --------->ANAC58                 --------->ANAC46                            --------->ZAT14                 <---------ANAC55(2) --------->HSFB2a(1)     <---------ZAT18                 --------->ANAC58    <---------HSFB2a(1)  <-------GAMYB                 --------->ANAC55(2)--------->ARR14(2)   <---------MYB46(3)              ------>ZmHOX2a(1)   --------->LBD16      <-----------HVH21            <---------ICU4       <---------HSFB2a(2) ------>ZmHOX2a(2)                            ===            ------>ZmHOX2a(2)    --------->HSFB2a(2) <-------TEIL                         --------->ATHB12           <---------YAB1       <---------LBD16     <------ZmHOX2a(2)                    --------->ICU4          <---------ARR11(3)  --------->ARR14(2)   --------->ARR14(2)            --------->ATHB12 <--      --------->YAB1       <---------ICU4          --------->AGP1               <---------YAB1    ---      <---------At4g35610 <---------YAB1           <---------ARR11(3)      --------->ANAC58       === ->ICU4   --------->ARR11(3)  <---------ARR14(2)   --------->ARR11(3)      --------->ANAC46    ------ --YAB1 <---------YAB1    --------->ICU4           <---------ARR14(2)      --------->ANAC58 <--------   tctgactctgatgatccttacgcaagtgatcatttccggatgttcgaattcaagatccgtcgttgcactcgtagccgaagccacgattggactgattgtc  954900                                      --------->O2                                      <---------O2                                      --------->TGA1a                                      =================bZIP_DOF                               ----------->HVH21                             ==========================bZIP_DOF                             --------->O2                             <---------TGA1a                             --------->TGA1a                             <---------O2                                                <---------MYB46(3)                            <------NtERF2                                               <---------YAB1                           <-----------HVH21                                         --------->ALFIN1                 ---------->DOF2      <---------TGA1a                                <---------AtMYB61           --------->LBD16 ------>NtERF2---------->ID1                            --------->ALFIN1 ======================================bZIP_DOF                                 <---------ANAC46 --------DOF2    ======================bZIP_DOF                              <---------ANAC58       - --->ZmHOX2a(1)  ===============================bZIP_DOF <---------MYB52(1)  <---------ANAC58      -- ===============================================bZIP_DOF--------->LBD16--------->LBD16<---------MYB46(3) ---->ID1<---------LBD16   <---------RAP2.6(3)        <---------LBD16 --------->LBD16<---------ANAC46 -WOX13(1)--------->LBD16 --------->DEAR3(1)<----------DOF2 <---------AtMYB61<---------ANAC46     <--   cttttgctcatcccggtgagaaagctcgccgtcgtgaccctcgtcgctttcaatactccggtgaggtttgtcccgagtttcgtcgtggtggtgattgtag  955000  Previous    Next  AGI:  At1g03790.1    Description:  zinc finger (CCCH-type) family protein. similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT5G44260.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69777.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) Range:  from: 954524    to: 956096    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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