Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                             <----------ID1                                                        ---------->DOF2                                                    --------->ANAC58                                           <---------AHL20(2)         <---------ARR11(3)                --------->AHL20(1)                    --------->YAB1        <---------CCA1(2)                  --------->AHL20(2)           <---------GLK1(1) -------->DOF2                             <---------AHL20(1)           --------->GLK1(1) ----->ANAC46                      ----------->GT1  --------->ANAC58--------->ANAC58               <- ----->ANAC58           <---------ARR14(2)<---------AHL20(2)        --------->ANAC58        --------- ----->ANAC58           --------->ARR14(2)--------->AHL20(2)      --------->MYB52(1)  --------->GLK1(2)   cgaaagacatatatctaagcgtttcggttctgagaaacagcaaaataaattcagacgaaaaagaacaaaaacggaaatcggaatcaaaattctatcatca  135700                                                               <---------DOF5.7(2)                                                               --------->MYB52(1)                                                              <---------WRKY38(1)                                                   --------->ANAC58                    --------->MYB52(1)             --------->ANAC58                    <---------DOF5.7(2)   <---------At4g35610 <---------ZAT14                   ----------->HVH21   <-------TEIL--------->ANAC46   <XXXXXXXXXXXXXXXXXXXXMIR159C                 <---------ANAC55(2)  --------->GLK1(2)       <---------WRKY12                     --                 <------MYB46(1)      --------->CCA1(2)       --------->ZAT14                      <-                --------->MYB111(1)   --------->ARR14(1)     ----------->HVH21                     <-    --------->TOE2(3)                <---------ARR14(2)    <------MYB83                          <---    --------->TOE1(3)                --------->ARR14(2)    <---------DEAR3(2)                --------   ----------->RAV1(2) ------->GAMYB --------->ARR11(1)    <------MYB46(1)                  <--------  -------->P    --------->MYB46(2)   <---------GLK1(2)    <---------DEAR3(1)        --------->ANAC58 --------MYB52(2)<------MYB83      ----------->ARR10      <---------DREB2C(2)       --------->ANAC58 >YAB1          --------->MYB59----------->GT1   --------->MYB52(1) <---------ANAC46--------->ANAC46<   aactaacctgaaacgaagtaggtaacggcgagatagtaagattcggctaataaacggaagtcggtgaacggcgttttcttcaattcaagcaactggtccc  135800                                         ------->TEIL                                        <---------CCA1(2)                                    <---------ANAC46                                    <---------ANAC58                                    <---------ANAC55(1)                                    <---------ANAC58                                   --------->MYB52(2)                                 <---------MYB52(1)                                 <---------ARR14(2)                                 --------->ARR14(2)                                --------->At5g28300  <---------DEAR3(1)            <-------GAMYB                        --------->DAG2            ------ <------NtERF2                 <---------DEAR3(2)                   ---------->DOF2            <----- ------->O2                    <---------MYB46(3)               --------->HSFB2a(2)            ------ --------O2                    ----------->GT1                  --------->LBD16                ------ --------DEAR3(1)             <---------ANAC46                  ------>ZmHOX2a(1)         <---------YAB1 --------HVH21                <---------RAP2.6(2)               <---------HSFB2a(2)    --------->AHL20(1) ->PCF5 ---------->DOF2       <---------DEAR3(1)               <---------LBD16         --------->AHL20(2) ---HVH21                   ------------>MYB.PH3(1)            --------------->AGL15   <---------AHL20(2) -----------HVH21           ------------>AtMYB77              <---------ANAC46        --------->AHL20(2)   gtcgtcgctggaaagagagagagactcatatggcggttacttgtatctctctctgtatattgtttcctggaaaagtagtatatgagaattttattatacg  135900                                                                                                    -                                                                                                    <                                         ---------->DOF2                                            <                                      --------->YAB1                                                <                                     <---------YAB1                                            <-----  --------->DAG2                    --------->AHL20(1)                                         <----- ---------->DOF2                    --------->AHL20(2)                                         <----- --->ANAC46                     <---------AHL20(2)                                             <----- -----ID1                      --------->AHL20(2)                                          <---------WOX13(1) --->ANAC58      <------ZmHOX2a(1) <---------ICU4                                     --------->At4g35610 --->ANAC58---------->DOF2     <---------AHL20(2)             <---------ICU4          <---------At4g35610   acaaaaagggagggaaagaggaatattatgcaattaaatattataaagtctgttcaattgaaaatcatttcataaaacaatttcattcagatgaatgact  136000                                                            ------->TEIL          --------->SPL7                                 <---------YAB1     <-----------HVH21                                 <---------ICU4  ---------->DOF2                                     --------->ICU4 <---------WRKY12                                ------>NtERF2 <---------WRKY38(1)                             <---------PCF5 <---------WRKY45                                --------->PCF2 -------->WRKY18(1)                              <---------TCP15(1)                                 - <<<<<<<<<WRKY18      --------->ANAC46           <---------TCP20                                    - <<<<<<<<<WRKY62      --------->ANAC58           <---------TCP16(1)                                 < <<<<<<<<<WRKY40      --------->ANAC58         --------->LBD16                                     <- ----ANAC46        <---------KAN4(2)          <---------ANAC58                                    <-- ----ANAC58  <------NtERF2                    <---------ANAC58                                    --- ----ANAC58<---------DEAR3(1)                <---------LBD16<---------YAB1      --------->YAB1    <-- ----bZIP60(2)<---------ANAC46              --------->MYB52(1)<------------CBF <-------TEIL       ---   tggtcaaagtcagacggcgagaataagcaagttgccaaattttaagtaccgggcccattatgaatattgagcccatttagattcatgacccaaaatgaag  136100                                                                            <------NtERF2       ----------->RAV1(1)                                                <---------DEAR3(1)       ------>NtERF2                                                      --------->DEAR3(1)      <---------ALFIN1                                                   <------NtERF2     --------->MYB46(3)                                                  --------->ATERF1(1)    --------->DEAR3(1)                                                  <---------ATERF1(1)   --------->PCF2                                                       ------>NtERF2   --------->ANAC46                                                   <------NtERF2 --------->DEAR3(1)                                                   --------->ATERF1(1) --------->ANAC46                                                    <---------ATERF1(1) ------->GAMYB                                                       <---------RAP2.3(1) -------->DEAR3(2)                                           <---------ARR14(2)                     - -------->MYB46(3)                           <---------AHL20(2)     <---------DEAR3(1)          ----- ------------AtMYB77              --------->ZAT14      --------->ETT(1)<---------ANAC46         <---- --------At5g28300        <----------DOF2   --------->AHL20(2)     --------->SPL7           <-------- -------ARR14(2)        *TSS      <---------REM1(2)    <---------ANAC46--------->DEAR3(1)   --------- ------>MYB52(1)       <-----------GT1      <---------AHL20(2)     <---------ORA47(1) ----------->HVH21 ---------GT1      ------>ZmHOX2a(1)       <---------WOX13(1)--------->ARR14(2)   <----------DOF2 --- ------>ARR14(2)  --------->TOE2(3)  --------->ZAT6 <-----------RAV1(1)<---------DEAR3(1)<---------DEAR3(1)   taaccgccccaccatatgttccttatttcttttctcttcacactgatttattttctgtcggaaaatacggacggcgtcgtcgttctttttgacggtgtag  136200       <------NtERF2      ------>NtERF2     <---------ANAC46     <---------DEAR3(1)     --------->DEAR3(1)    --------->RAP2.3(1)       ----------->GT1  --------->DEAR3(1)         <---------TOE1(3) --------->DEAR3(2)          <---------TOE2(3) -------->MYB52(1)     <---------------AGL15         <---------AHL20(2) ---->At4g35610      <---------AHL20(2)          <---------ANAC46               <---------ANAC58 -----At4g35610    <---------RVE1(1)         <---------ANAC58               <---------DAG2 -REM1(1)         <---------GLK1(2)          <---------ANAC58               <----------DOF2         < >ALFIN1          --------->ARR11(3)         <---------ANAC46           ------>ZmHOX2a(2)      <----- -------->HVH21   <---------ARR11(3)  <---------GLK1(2)          <----------DOF2<---------ANAC58    <   ctcaccggcgtcgatttttagatttttttttaaggtaacatattcttccttgtgtttaatctccatacttttgatctacttttcgttcttgtttagtctt  136300                                                                         --------->WRKY38(1)                                                                         --------->WRKY12                                                                         ----------->HVH21                                                                        <---------MYB52(1)                                                                       <---------At4g35610                                                                       <-------GAMYB                                                                      <---------ANAC46                                                                  <---------ANAC58                                                                  <---------ANAC58                                                                 <---------At4g35610                                                      --------------->AGL15                                         ----------->GT1         --------->At4g35610 ---------ZAT6   ---------->ID1      ---------->DOF2  <---------------AGL15 -----DOF2  <----------DOF2   <---------ATHB12       ----------------->AGL1 -----------RAV1(1)         --------->WOX13(1)       ----------------->AGL3                         <   tagtgttgttcgagcttttgtctccaatttcaatcaattcaaagggtttttagattccaaattttgtagcttccgttgacacatcgagttgtcgaactgt  136400                                     ------>ZmHOX2a(1)                                    <---------ANAC58                                            <----          ------>ZmHOX2a(2)         <---------ANAC58                                            -----          ==================================HOX2a_HOX2a                                    <---------ANAC58         <---------At4g35610   --------->At4g35610                                         <---------ANAC58     <---------WOX13(1)        <---------At4g35610             --------->DREB2C(2) ----------->GT1 <---------ANAC46  <---------At4g35610       <---------ZAT6   <------NtERF2   <---------STY1(2) <---- ---------LBD16--------->HSFB2a(2)  --------->TOE2(3)        ------>NtERF2   --------->MYB59    -----   gtttcggattgatctgtctggagcttctatttctgcttccttatctactgtgaatgaaattgccaccgatatagatagttagctagggtttattcgtgag  136500                                       <-----------RAV1(1)                                   <---------AHL20(2)             --------->GLK1(2)                                   --------->AHL20(2)             <---------ARR14(2)                                 --------->ICU4                   ------->TEIL                               <---------ICU4                     --------->ARR14(2)                              --------->ICU4                     <---------GLK1(2)                         <---------At4g35610                <-----------GT1                         --------->At4g35610             --------->YAB1 <---------ANAC46      <-----------RAV1(2)            -------->ATHB1 -----At4g35610        ============================RAV--------->ATHB51 ---->ZAT2          <---------GLK1(1) <---------TOE2(3) <---------YAB1              --------->AHL20(2) -----ZAT2   --------->MYB59  <---------YAB1          --------->YAB1            <---------YAB1 ---->At4g35610<------ZmHOX2a(1) <---------YAB1      <---------YAB1   ----------->GT1<---------AHL20(2)   ctcgcgtagatgaattaggaagaattcaggtgatcatttttatgttgcattgtctattattgtaactgaatctggagaaattttgataaaattgttgttt  136600  Previous    Next  AGI:  At1g01350.1    Description:  nucleic acid binding. similar to zinc finger (CCCH-type/C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G06420.1); similar to zinc finger (CCCH-type/C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G06420.2); similar to Os02g0301000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046620.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN64331.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 136124    to: 138162    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version