Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                       <---------TOE2(3)                                                                                 --------->YAB1                                                                                 --------->TOE2(3)                                                                               <---------TOE2(3)                                                                               <---------TOE1(3)                                                             --------->TOE1(2)<---------DOF5.7(2)                                                            <---------ZAT2    <-----------GT1                                                            --------->ZAT2    --------->MYB52(1)                                                         ---------->DOF2    <---------MYB52(2)     --                                                     <---------ZAT18     <---------AHL20(2) <--------           <---------AHL20(2)                        <---------ZAT14     --------->AHL20(2) ------->TEIL           <---------YAB1        <---------YAB1      --------->ZAT14   --------->ANAC55(2)  ---------   <---------HSFB2a(2)        --------->ICU4    <---------At5g28300    <---------ANAC55(2) <---------CCA1(2) ----ZmHOX2a(1)     ---------->DOF2            <-----------GT1         ----------->GT1<-----------RAV1(1)   ggattttagaagttttattgacaaaagtagacattatcatttactcgttttacagtggacaaagctgggaattaagtaattaacgataatgttgtatctg  111600                                                               <------MYB46(1)                                                               <------MYB83                   <------                                                           --------->ARR14(2)           <---------At4g35610                                                           <---------ARR14(2)      --------->ANAC58    <---------ANAC46                                 <-----------RAV1(1)  <---------AHL20(2)--------- -------->DOF2              <----------DOF2       <---------TOE1(2) <---------ANAC46<-----------HVH21 -ARR14(2)           ------->TEIL                ------>ZmHOX2a(1)<---------ZAT14  --------->ANAC58<- >ARR14(2)        <---------YAB1       <---------YAB1--------->ALFIN1 ----------->GT1   --------->At4g35610   ttaaagtcgtagactagctcatgaatcagtctttattcattctgatatgtcctatgtgttggatttggtgaagtgtttaatcgacaagtcagataagtgt  111700              --------->GLK1(1)             <---------ARR14(2)          --------->ANAC58          --------->ANAC58          --------->ANAC46                                                            --------->ANAC58          --------->ANAC55(2)                                                         --------->ANAC46          --------->ANAC55(1)                                                         --------->ANAC58          <---------ANAC55(2)                     <---------ANAC58                   --------->ZAT18      <-----------HVH21                           <---------ANAC46              <---------ANAC58     <------MYB46(1)                         --------->ATHB12                   <---------ANAC58     <------MYB83                     --------->At4g35610                      <-------TEIL    <---------AtMYB61                 <---------At4g35610                 --------->YAB1   <---------WOX13(1)                 <---------ZAT2                     <---------YAB1 --------->ATHB12          ----------->RAV1(1)    <---------ANAC58  --------->ZAT6 <---------ZAT14 ---ZAT6 <---------LBD16  <----------ID1    <-------TEIL         <---------ARR14(2)--------->ZAT14 >ANAC55(2)  --------->ARR14(2)       --------->ZAT2             --------->ARR14(2)<---------ZAT18 --------TOE2(3)      XXXXXXXXXXXXXXXXXXXX>MIR863-3P            <------ZmHOX2a(1)  --------->ZAT18<--   tatggattggtcacggaattgctcaagaacaacaaaacacagctgattcattgcttgtgaacaagaggaaacactatgatgttcgtgcacaccattttta  111800                     <---------DOF5.7(2)                   <---------MYB52(1)                   --------->DOF5.7(2)                                                    <xxxxxxxxxx           --------->TOE2(3)                                                     --------->AHL20(2)          --------->YAB1                                                        --------->YAB1        --------->MYB52(1)                                          ----------->GT1      --------->ARR14(2)      <---------MYB52(2) ----------->RAV1(2)                 --------->ALFIN1  --------->AHL20(2)<xxx -------ZAT6  ------------>MYB.PH3(1) ---------->DOF2    <-----------RAV1(2) --------->YAB1 <xxxxxxxx   gtgttcaaactaacataaaccgttatcgcctggggaaaacaaaagttttaagaagagaaacaggtggaaaatgtaacaaaaataaaaataggttccaccg  111900                                              <xxxxxxxxxxxxxxxsmallRNA(le3)                                             <xxxxxxxxxxxxxxxxsmallRNA(i)                                            <xxxxxxxxxxxxxxxxxsmallRNA(se3)                                         <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                         <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                        --------->MYB46(3)                                        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                      --------->MYB52(1)               <------------CBF                                     ------>ZmHOX2a(1)       *TSS     <<<<<<<<<RAP2.2                     <-------TEIL    <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         --------->ANAC55(2)                 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        <----------DOF2         <---------ANAC55(2)            <--------P              <---------MYB59     --------->MYB46(3)         <-------TEIL          ----------->GT1        --------->ZAT18      <---------ARR14(2)     --------->At5g28300 xxxxxxxxxxxxsmallRNA(i2)        <---------ZAT18      --------->ARR14(2)    ----------->GT1 xxxxxxxxxxxxxsmallRNA(s)      <xxxxxxxxxxxxxxxxxxxsmallRNA(l2)      <---------TOE2(3) xxxxxxxxxxxsmallRNA(fl3)   <---------ZAT14 <xxxxxxxxxxxxxxxxsmallRNA(i)  <---------ZAT14     <------   agacttgaactcgggttactagattcagagtctagtgtcctaaccgctagaccatggaaccgcttgatgtttagattgcagtaaatacgtttttaatatg  112000                                          --------->GLK1(1)                                          <---------GLK1(1)                                         <---------ARR11(3)                                         <---------GLK1(2)                                      --------->HSFB2a(2)              ---------->DOF2         <---------HSFB2a(2)      ------>ZmHOX2a(1)             <---------WRKY38(1)  <----------DOF2 --------->At4g35610         ---------->DOF2    <------------CBF         --------->HSFC1(2)   <---------At4g35610      --------->AHL20(2)    ---- ---AHL20(1) <---------WRKY12<---------HSFC1(2)------>ZmHOX2a(1)    <-----------GT1        ----------   tttctctattgtgagtcaaagggtaatgcgatgtttctttctagatttcctaagctaactcagtcctaataaaccgattaaaaagaacatgaacaaagca  112100                 --------->ANAC58                 --------->ANAC58        ---------->DOF2    --------->YAB1                                                       <-----------GT1   <------ZmHOX2a(2)                                                    --------->AHL20(2)  <---------ARR11(3)                                                    <---------AHL20(2)  --------->ARR11(3)                                                 <---------ICU4 <---------At4g35610            <-------TEIL                        --------->ICU4 ----->AtLEC2<-----------HVH21 --------->CCA1(2)                  --------->YAB1 >DOF2<---------YAB1---------->DOF2                 <-----------GT1 <---------YAB1            <------   tgcagatcataaaagtgtcacacaaagagagagatacatgttagattgtttttttttcttctcttaaatgataattaatcgttctaacaaaaacttagct  112200                                               <---------KAN4(2)                                            ----------->GT1                                           --------->ANAC46                      <------------CBF    --------->SPL7                    --------->ARR11(3)   --------->MYB52(1)                    <---------AHL20(1)  <---------SPL7---------->DOF2                    --------->AHL20(1) --------->AtMYB61                                          <--          --------->ATHB12       ---------->DOF2    --------->YAB1                       --------->ARR11(3) ---At4g35610 ----------->GT1 ----------->RAV1(1)--------->YAB1*TSS            <---------TOE2(3)  <--   actagtcttccatgatttgttatatattgagacaacaaagaccatacggtataatcaaaagacttgttgaatatagaatataagattagatgattttggt  112300                                                                                                 <---                                                                                           <-------TEIL                          <---------YAB1                                                  --------->TCP16(2)                         --------->YAB1                                                  <---------ARR14(2) -------ANAC58           --------->TOE2(3)                                ---------->DOF2--------->ARR14(2) -------ANAC58      <---------YAB1                                 ---------->DOF2  ------>ZmHOX2a(1)   gctagcctccctcttcgctgttctcattcttaatgttcttctatggagatggctcaaggcttcagcatgtaaagcccaaaggcttcctccaggtccacca  112400     <---------------AGL15                                                       <---------TGA1a     --------------->AGL15                                                       <---------O2     ====================================================MADS_MADS               --------->TGA1a    <---------------AGL15                                                        --------->O2    --------------->AGL15                 =================================================MYC_MYB   ======================================================MADS_MADS             <---------ALFIN1   ----------------->AGL1                 ---------->CDC5                     <---------ZAT18   <---------ANAC58                     --------->TOE2(3)                   --------->PCF2   <-----------------AGL3              ----------------->AGL1             --------->ANAC58   <-----------------AGL2              ----------------->AG               --------->ANAC58   <-----------------AG                <-----------------AGL1        <---------------AtSPL8     <----   <-----------------AGL1          <----------DOF2                   <---------------AtSPL3   ------>NtERF2   ----------------->AGL3       ------>NtERF2                        <---------ICU4           -------   ----------------->AG     --------->ALFIN1           <---------ANAC58  --------->RAP2.6(3)<--------   <---------ANAC58  ====================================MADS_MADS  --------->ICU4    --------->ETT(2) ------YAB1          <-----------------AGL3            <---------ANAC58  --------->SPL7   --------->AtMYB61   agattgcctattttgggtaaccttcttcaattggggcctttacctcatcgggacttggcttctctatgtgataagtacggcccacttgtctacctccggc  112500  Previous    Next  AGI:  At1g01260.1    Description:  basic helix-loop-helix (bHLH) family protein. similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT2G46510.1); similar to Myc2 bHLH protein [Vitis vinifera] (GB:ABR23669.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) Range:  from: 109032    to: 111609    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g01270.1    Description:  pre-tRNA. tRNA-Gln (anticodon: CTG) Range:  from: 111890    to: 111961    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g01280.1    Description:  CYP703/CYP703A2 (CYTOCHROME P450, FAMILY 703, SUBFAMILY A, POLYPEPTIDE 2); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen / oxygen binding. similar to TT7 (TRANSPARENT TESTA 7), flavonoid 3'-monooxygenase/ oxygen binding [Arabidopsis thaliana] (TAIR:AT5G07990.1); similar to cytochrome P450 [Petunia x hybrida] (GB:BAA92894.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14388.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN79465.1); contains InterPro domain Cytochrome P450, E-class, group I; (InterPro:IP Range:  from: 112263    to: 113947    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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