Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100              ------>ZmHOX2a(1)                                    <---------At5g28300      <---------ALFIN1                                    ------------>AtMYB77     --------->ZAT14                                <---------ANAC58     --------->ZAT18               --------->KAN4(2)<---------ANAC46     <---------ZAT14            <---------ANAC46    <---------REM1(1)   <---------MYB52(1)     <------NtERF2              <---------ANAC58    --------->ALFIN1 <---------ANAC46     <---------ZAT18            <---------ANAC58    <---------ANAC58<---------At4g35610 --------DOF2         <----------DOF2    --------->ANAC46 ----------->RAV1(1)                      <-   ctttggctgcactcctctcttctcctttcaaattgcttattccaagtcccattggtgtggcaacagttactgctggtatgtactgtatgagtcgctatgc  97100                               --------->ARR11(3)                               <---------ARR11(3)                             <---------TOE2(3)                             <---------TOE1(3)                      <-----------TGA1                     <---------TGA1a                     <---------TGA2(1)                     --------->TGA2(1)                     --------->bZIP60(1)                     --------->TGA1a                     --------->ANAC58                     --------->ANAC58       <---------ARR14(2)                     <---------bZIP60(1)    --------->ARR14(2)                     --------->bZIP60(2)   <------ZmHOX2a(1)      ---------->DOF2                     --------->O2        <---------TOE2(3)     <---------ANAC46                    <-----------STF1 <---------At4g35610       --------->ANAC55(2)                 <-                  ----------->HVH21  --------->At4g35610       <---------ANAC55(2)             >>>>>>         <---------ZAT6--------->TGA2(2) <---------TOE1(3)--------->TOE1(3)                 >>>>>>>>>TBF1 ----------------AGL1<---------O2  <-----------RAV1(2)    --------->TOE2(3)              >>>>>>>>>TBF1   taccgatattggtgttagaagcgacgtcattaaggtctcagttgaggatttggctctcaaccttgacgtaaagaccattgagcaaggtgaagaagaagaa  97200                                    ----------->HVH21                                  <------MYB83                                  <---------At4g35610                                  ----------->GT1                                  <------MYB46(1)                         ------>MYB46(1)       --------->GLK1(1)                         ------>MYB83         <---------ARR14(2)                 <---------YAB1   --------->At4g35610              --------->GLK1(2)   --------->ANAC55(2)             <---------ARR14(2)   <---------ANAC55(2)             <---------GLK1(2)   --------->MYB52(2)             --------->ARR11(3)  --------->MYB111(2)            --------->HSFC1(2)   --------->MYB46(2)       <----------DOF2            <---------HSFC1(2)   --------->MYB59 --------->ANAC55(2)            --------->HSFB2a(1)  --------->MYB111(1)------>MYB83  --------->ANAC58            <---------HSFB2a(1) <---------MYB55(1)  ------>MYB46(1)            <-------TEIL       >>>>>>>>>TBF1  --------->DEAR3(2) --------->MYB52(1)       --------->ANAC46 ---------ID1--------->ARR14(2)<---------MYB52(1)<---------ANAC55(2) ------->TEIL >>>TBF1   ----------->ARR10 <---------YAB1   --------->ARR14(2)  --------->ANAC58   gaagacgaagaagaagattctgataccgactatgttaggtgacaaacagatacctatcacctttgttcacgaatttcgatatacataagaaaacatttca  97300                    --------------->AtSPL8              <------MYB83              <------MYB46(1)          <-----------RAV1(1)              <---------MYB46(3)       <---------MYB46(3)            <--------P      <----------DOF2          <-----------RAV1(1) --------->ATHB12       ------>ZmHOX2a(1)    <---------DAG2   <---------ARR14(2)     --------------->AGL15                                     <---------AtMYB61   --------->ARR14(2)    <-----------------AGL1    <-----------GT1          --------->DEAR3(1)  -----   gttagaatcctcatgttggttttatgttccctttattgcatttgttggcctattttctgtctgtacaaaatgaaaacgcagacgttttggtttgggtaat  97400                     <---------AHL20(2)                     <---------ICU4                 --------->AHL20(2)                 <---------AHL20(1)                 <---------AHL20(2)                 --------->AHL20(1)              <---------ICU4              <--------HAHB4              --------->YAB1              <--------ATHB1              --------->ATHB51             --------->AHL20(2)             <---------ATHB12             <---------ATHB51                                          --------->ANAC46         ------------>CBF                   --------->DAG2           --------->ANAC58      --------->ARR11(3)                   ---------->DOF2           --------->ANAC58      <---------ARR11(3)        <---------ZAT14            <-----------HVH21              <---------MYB52(2)     --------->CCA1(1)          --------->ZAT14           <----------DOF2              <----------ID1     --------->RVE1(1)---------->DOF2 <-------TEIL      *TSS  <---------LBD16--------->AHL20(2) ------>GT1  --------->ICU4     --------->REM1(2)    <------NtERF2  --------->ZAT18---------->DOF2   gtcaaaaatatcccaataattaattaatgcccagtgtagatgcaaaaaagcagtcgtcgtctttcacgggcacacaaaattaaaccaaagaaacaaacaa  97500                                                                                                    <                                                                                                -----                                                                                               <-----                                                                                              -------                                                                                              <------                                                                                           ------>ZmHOX2a(2)                                                                                          <------ZmHOX2a(2)                                                                                         <---------ARR14(2)                                                                                      <-------TEIL --                                                                                     --------->CCA1(2)                                                                                     --------->ARR14(1)                                                              --------->ARR11(3)     --------->GLK1(2)                              --------->ARR14(2)              <---------GLK1(2)     <---------GLK1(2)                              ------->TEIL                    <---------ARR11(3)    <---------ARR14(2)                              <---------ARR14(2)  ----------->GT1                   --------->ARR14(2)                              --------->GLK1(2) <---------At4g35610     ---------->DOF2  --------->ARR14(2)                     --------->GLK1(2)        <-----------RAV1(2) <---------YAB1  ----------->ARR10<-   tccttgttctcgccgaaatagagaattttgtgaatctgggtttttagttcaggtgttaatataagattttgatcaaaagaagacgagattcgatccgatc  97600                                                      --------->GLK1(1)                                                      --------->CCA1(2)                                                     <---------ARR14(2)                                                     --------->ARR14(2)           >>>>>>>>>TBF1                        --------->MYB52(1)     <---------WOX13(1)           ---------->DOF2  --------->LBD16   --------->ATHB12             ----------->HVH21<---------LBD16    --------->ANAC58  <---------YAB1             ------->TEIL      --------->DEAR3(1)   --------->ANAC46  <---------LBD16 ------>ZmHOX2a(2)     <---------ARR11(1)      <---------ALFIN1     <---------ANAC55(2) ------ZmHOX2a(2)      --------->GLK1(2)       --------->AtMYB61    --------->ANAC55(2) ->ZmHOX2a(2)          <---------ARR14(2)     <---------MYB55(2)    --------->ANAC55(1)--------->LBD16 -ZmHOX2a(2)           --------->ARR14(2)     --------->MYB46(3)    --------->ANAC58  <-----------RAV1(2) -->ARR14(2)           ------->TEIL      --------->ARR14(2)        <---------LBD16    <---------HSFB2a(2) ---ARR14(2)          <---------ARR14(1) <---------TCP20<---------YAB1       <-------TEIL<------ZmHOX2a(1) ------->ARR14(2)   <---------ANAC58     <---------ARR14(2)      <---------ARR14(2)<---------ARR14(2) --------ARR14(2)   <---------ANAC58   <---------MYB46(3)      <------ZmHOX2a(1)   ------->TEIL   cgatctgattgaagaagaaatggcgaatctgtatgtgaaagcggttccaccaccggatatgaataggaatacggaatggttcatgtatccaggagtttgg  97700                            <------MYB46(1)                           <---------ANAC58                            <---------DEAR3(2)                        <---------ANAC46                            <------MYB83                      --------->LBD16                           <---------DEAR3(1)                <---------LBD16                          <--------P                         --------->LBD16                          <---------MYB52(1)                <---------LBD16                         <-------GAMYB                      ----------->RAV1(2) <---------MYB46(3)                        <---------DEAR3(2)             --------->KAN4(2)        ----------->GT1                        <---------MYB46(3)            <---------MYB46(3)      <-------GAMYB            --------->KAN4(2)    <-------GAMYB       <--------P       <---------ANAC58   acgacttacatgcttattctcttcttcggttggctcgttgttctctctgtctctggttgttcccctggaatggcttggactgttgttaatctcgctcact  97800                                                              --------->AHL20(2)                                                             --------->AHL20(2)     <---------ANAC46                                                           <----------DOF2          <---------ANAC58                          <----------DOF2            ----------->GT1                <---------ANAC58                       <---------YAB1                <---------MYB46(3)      <---------WOX13(1)                 <---------ANAC46                  <-------GAMYB         <---------WOX13(1)     <----   tcgttgtaagtcttcgattgtgtttatgctttagagatgattttttcacttagggttgtgactttaaattagatgatggattgattccttgttttttttt  97900                    <---------ARR14(2)                    ------->TEIL           <---------HSFB2a(2)          ------>ZmHOX2a(2)         <------ZmHOX2a(2)         --------->CCA1(2)        <---------AGP1        --------->ARR11(3)        <---------ARR11(3)        --------->ARR14(2)        <---------ARR14(2)        --------->AGP1       <---------GLK1(1)       --------->GLK1(1)      ----------->ARR10                                                        <---------TOE2(3)    =============HOX2a_HOX2a                       ----------->GT1             <---------TOE1(3)    ------>ZmHOX2a(1)           <---------ZAT6  <----------DOF2          <------MYB83    --------->LBD16 --------->GLK1(2)        ------>ZmHOX2a(2)           <------MYB46(1)  ----------->RAV1(2)      <----------DOF2 --------->ARR11(3)   <---------AHL20(2)                  < -----AHL20(2)      --------->ARR14(2)     <---------ARR11(3)   --------->AHL20(2)               ----   tatttcctgagatctggatgtgaatctggctctagtgtttgaattgatctctttggttattagcaattttttagttggtttagggttcgaatgaagaggc  98000  Previous    Next  AGI:  At1g01225.1    Description:  NC domain-containing protein-related. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G00905.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN66977.1); contains InterPro domain NC (InterPro:IPR007053) Range:  from: 95987    to: 97407    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g01230.1    Description:  ORMDL family protein. similar to ORMDL family protein [Arabidopsis thaliana] (TAIR:AT5G42000.1); similar to unknown [Populus trichocarpa] (GB:ABK92655.1); contains InterPro domain ORMDL; (InterPro:IPR007203) Range:  from: 97456    to: 99240    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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