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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                            <-----------GT1
                         ----------->GT1
                        <---------AHL20(2)
                    <---------AHL20(2)                    <---------At5g28300
----->ARR11(3)     <---------AHL20(1)              >>>>>>>>>RAP2.2
----->AHL20(1)     --------->ARR11(3)            --------->ARR14(2)
------ARR11(3)     <---------ARR11(3)            <---------ARR11(3)
------AHL20(1)     <---------AHL20(2)            <---------ARR11(1)
---->YAB1          --------->AHL20(1)           <---------CCA1(2) ------>ZmHOX2a(2)               --
>RAV1(1)           --------->AHL20(2)   <---------ATHB12 <-----------GT1         <---------ZAT6  <--
 
atattccatattgtattagaaatatatttagttacaaaatcaaatcaaaccatatctaaattaccgtgatccaagtgaaatgaagtgatagtctaaacaa  87800
                                                                                                   -
                                                                                                   -
                                                                                                   -
                                                                                                   <
                                                                                                   <
                                                                                                   <
                                                                                                   <
                                                                                                ----
                                                                                                <---
                                   ---------->DOF2                                          <-------
                                  <---------AHL20(2)                                       ---------
                               --------->AHL20(1)                                         --------->ATERF1(1)
                               <---------AHL20(1)                                         <------NtERF2
                              --------->AHL20(2)                                         <---------DEAR3(2)
                          --------->AHL20(2)                                            <---------DEAR3(1)
           --------->DAG2 --------->AHL20(1)                                         <---------DEAR3(1)
          ---------->DOF2 <---------AHL20(1)                                      <---------WRKY18(1)
------->ATHB12            <---------AHL20(2)<---------YAB1              <-----------GT1<---------ABI4(1)
-------ATHB12      --------->At4g35610    --------->YAB1    --------->CCA1(2)    ----------->HVH21<-
 
atgatttgaatccaaaagtgagagcttaataaaatatataaagaattatcaatgtgtttttggatatagatgatataacctctcttgaccggcggtgtcc  87900
 ------>ZmHOX2a(2)
<------ZmHOX2a(2)
--------->CCA1(2)
-------->AGP1
-------->ARR11(3)
-------->ARR14(2)
-----------ARR10
---------ARR11(3)                     <---------ANAC58
---------AGP1                         --------->ANAC55(2)      <--------P
---------ARR14(2)                     <---------ANAC55(1)      <---------WOX13(1)
----->HSFB2a(2)                       <---------ANAC58       <---------MYB46(3)             <-------
------HSFB2a(2)                       <---------ANAC55(2)    --------->ATHB12               <-------
----HVH21----------->HVH21            <---------ANAC46      <---------ATHB12  --------->MYB52(1)
>ALFIN1<----------DOF2           <---------AtMYB61 --------->ANAC46        --------->YAB1   <-------
--------CCA1(2)         --------->LBD16--------->LBD16 ------>NtERF2       <---------ICU4<---------MYB52(1)
 
cagatctgagctttgacgagtttgccccgaagagtgatggtccgtgtctgaaactcgacaccaatggttgattttgaatcataacagaactcgttgtgtg  88000
                        ----------->RAV1(1)
                        ------>NtERF2
                       ----------->HVH21
                       --------->LBD16
                       <---------ETT(1)
               <---------ANAC58                 --------->DEAR3(1)                  <---------DEAR3(1)
               <---------ANAC46              --------->AtMYB61              ------>NtERF2
               <---------ANAC58  <---------ARR14(2)                         --------->LBD16    <----
              <-------TEIL       --------->ARR14(2)                       <---------LBD16      <----
           --------->At4g35610   --------->GLK1(2)         <---------ANAC55(2)      <---------TOE2(2)
           --------->ZAT2       --------->ARR14(2)         --------->ANAC46<---------LBD16     <----
           <---------ZAT2       <---------ARR14(2)         --------->ANAC58--------->ANAC46    <----
           <---------At4g35610  <---------GLK1(2)          --------->ANAC55(1)      <---------TOE1(2)
  --------->TOE1(2)    --------->ANAC46     --------->MYB46(3)        <----------DOF2      <--------
  <-----------HVH21   --------->HSFB2a(2) --------->YAB1   --------->ANAC55(2)  <------NtERF2  <----
 <---------ANAC55(2)  <---------HSFB2a(2)<---------ATHB12  --------->ANAC58<---------RAP2.6(2) -----
--ANAC46  --------->ARR14(2)--------->At4g35610 <---------ALFIN1     ------>ZmHOX2a(2) <---------MYB52(1)
--ANAC58  <---------ARR14(2)<---------At4g35610 --------->AtMYB61  --------->ARR11(3)<---------MYB46(3)
--ANAC58 <------ZmHOX2a(1) ----------->RAV1(1) --------->MYB46(3)  <---------ARR11(3)<---------DEAR3(2)
 
taaaacgtgagaggagctgcgttttcccgacagcagaatctccaatgaccaccaccttgaacacgtaatcgatcttttccggcatcgtcggtttctttac  88100
                       <---------At4g35610
                      --------->DEAR3(1)
                  ----------->HVH21
            <---------ATERF1(1)                   --------->At4g35610
 <---------MYB46(3) <---------At5g28300        <---------At4g35610                            ------
-----ANAC58 ------>NtERF2                     <---------ANAC46                             ---------
-----ANAC46 --------->LBD16              --------->ATHB51                                 ----------
-----ANAC58<---------DEAR3(1)            --------->ATHB12                                 --------->ZAT14
-----ANAC55(1) ------>NtERF2             <---------ICU4                           <----------DOF2
--DOF2    <---------LBD16   <---------CCA1(2)--------->ZAT18                    --------------->AGL15
-----ANAC55(2) <---------ATERF1(1)      <---------YAB1              ---------->DOF2       <---------ZAT14
---->ANAC55(2)--------->DEAR3(1)        --------->ICU4           --------->YAB1 <---------------AGL15
 
gtgtttgttattctccggcgactcaccgctcatctcttcgttcattattgcgctgatgaagaaaacaactataaagtttaagtctcttttgagtaaagtg  88200
                                                                    <---------MYB59
                                                                   --------->ANAC46
                                                                 <-----------GT1
                                                                <---------ARR14(2)
                                                                --------->KAN4(2)
                                                               <---------KAN4(1)              ------
                                           <-----------TBP     <----------TaMYB80             <-----
  ----------->GT1                       <------MYB83          ---------->TaMYB80          <---------ALFIN1
--->ALFIN1     ---------->DOF2       >>>>>>>>>CBP60g  --------------->AtSPL3             --------->MYB46(3)
>DAG2       *TSS        ---------->DOF2 <------MYB46(1)       <---------KAN4(2)     --------------->AtSPL8
>DOF2     ----------->GT1            >>>>>>>>>SARD1   <---------------AtSPL3      --------->GLK1(2)
 
ggagtgagtgaaacagagaaaagagaagaaaggagaagaaatttggttttatatggttcagtacgaatataccgaattaacaaaaattctgaaccacttc  88300
           --------->ARR14(2)                                                          <------MYB83
       <--------P                                                                      <------MYB46(1)
      <---------ANAC46                                                                <---------AtMYB61
     <------MYB46(1)                    --------->AHL20(2)                            --------->MYB59
     --------->ATHB12                   <---------AHL20(2)                        <------MYB83
     <------MYB83                 --------->TOE2(3)                      <---------ANAC58
     <---------MYB46(3)     --------->ANAC58                             <---------ANAC46
     --------->MYB55(2)     --------->ANAC46<---------AHL20(2)           ----------->GT1
  <------------CBF--------->YAB1  --------->YAB1                         <---------ANAC55(2)
--->ZAT14<------MYB83<-----------GT1   --------->AHL20(2)                <---------ANAC58       <---
----ZAT14<------MYB46(1)    --------->ANAC58--------->AHL20(2)--------->ANAC46    <------MYB46(1)
 
agtgagattggttggattcactcataaccattcgcaaccatatttaataaaactaaaactgctacaaaccaaaatttcgtaaatttggtttggtttaagt  88400
                                            --------->DAG2
                                           ---------->DOF2
                                    ------>ZmHOX2a(1)                                    <---------YAB1
                                <---------ARR14(2)                                       <---------AHL20(2)
                                --------->ARR14(2)                                       --------->AHL20(2)
                             <---------ANAC58                                           --------->AHL20(2)
                             <---------ANAC58  --------->ALFIN1                   <----------DOF2
                     <---------AHL20(2) --------->TOE1(3)                       <---------ZAT18
                    --------->AHL20(2)  <---------MYB59            ----------->RAV1(1)  <---------AHL20(2)
------MYB46(3)      <---------AHL20(2)  --------->TOE2(3)        --------->At4g35610  <---------YAB1
 
cgttgaaataacccaaactaaaattaaatattgagtatcctaacctaaaagtgttgatatatgaagacagcaacaatgctctgtgcattattttaattag  88500
                                                                                          --------->DREB2C(2)
                         <----------DOF2                                              --------->WRKY38(1)
                 --------->AHL20(2)                                          --------->ALFIN1   ----
                 <---------AHL20(2)                                         <----------DOF2     ----
                --------->AHL20(2)                                         <---------ANAC46    <----
                <---------AHL20(2)                                         <---------ANAC58<--------
               --------->YAB1                                              <---------ANAC58---------
           <---------AHL20(2)                                       <---------At4g35610 ------->TEIL
           --------->AHL20(2)--------->AHL20(2)             <---------AHL20(2)     <---------AtLEC2
     --------->AHL20(2)  <---------DAG2         ------->TEIL--------->AHL20(2) <---------ANAC46-----
  <----------DOF2<---------YAB1    <---------YAB1       --------->ICU4<-----------RAV1(1)--------->DEAR3(2)
 
ctcttcttttatatataattttaattagctttttatatatgattcaaaatgaatatacaatgtttaaatatagctgtggcttgtgggcatggaccgacat  88600
       --------->TOE2(3)
----->ATHB12
----->ATHB51                                                                    <---------ARR11(3)
-----YAB1    <---------AHL20(2)  <---------ZAT6                                 --------->ARR11(3)
-DDF1 ----------->GT1   <---------ATHB12                                     --------->DAG2
-->RAV1(1) --------->ICU4      ----------->GT1   --------->TOE1(2)          ---------->DOF2       <-
---->ICU4  <---------YAB1  <---------YAB1        --------->TOE2(2)     --------->TOE2(3)          <-
 
aattgaaaaacgttattattttgctaaatcaatatagtgatacaacatgaaacccacgatttgtctggagaccacctaaaaaagctcttatgctccatca  88700
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AGI:  At1g01200.1   
Description:  AtRABA3 (Arabidopsis Rab GTPase homolog A3); GTP binding. similar to SMG1 (SMALL MOLECULAR WEIGHT G-PROTEIN 1), GTP binding [Arabidopsis thaliana] (TAIR:AT5G47960.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24288.1); contains InterPro domain Rab11-related (InterPro:IPR015595); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras (InterPro:IPR013753); contains InterPro domain Small GTP-binding protein; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579)
Range:  from: 86515    to: 88213    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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